RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 ADH1BP00325 375 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 CHRNA1P02708 482 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 GALTP07902 379 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 HOXC4P09017 264 aaPredicted RBP4.36□□□□□ -1.71
SCN1A-202ENST00000375405 RPS12P25398 132 aaKnown RBP4.36□□□□□ -1.71
SCN1A-202ENST00000375405 MAOBP27338 520 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 ACAA2P42765 397 aaKnown RBP4.36□□□□□ -1.71
SCN1A-202ENST00000375405 HAAOP46952 286 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 MMP14P50281 582 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 PCBP3P57721 371 aaKnown RBP4.36□□□□□ -1.71
SCN1A-202ENST00000375405 INHBEP58166 350 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 SELENOTP62341 195 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 CACNG1Q06432 222 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 ADIRFQ15847 76 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 CD300LGQ6UXG3 332 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 ZNF517Q6ZMY9 492 aaPredicted RBP4.36□□□□□ -1.71
SCN1A-202ENST00000375405 MBOAT1Q6ZNC8 495 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 PIWIL4Q7Z3Z4 852 aaKnown RBP4.36□□□□□ -1.71
SCN1A-202ENST00000375405 OR4M1Q8NGD0 313 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 OR8J1Q8NGP2 316 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 TEPSINQ96N21 525 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 CDCA3Q99618 268 aaPredicted RBP4.36□□□□□ -1.71
SCN1A-202ENST00000375405 MKRN2Q9H000 416 aaKnown RBP4.36□□□□□ -1.71
SCN1A-202ENST00000375405 HRH4Q9H3N8 390 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 RNPEPL1Q9HAU8 725 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 SLC6A20Q9NP91 592 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 ISYNA1Q9NPH2 558 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 CLEC1BQ9P126 229 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 FBXO24O75426 580 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 CLPSP04118 112 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 PRSS1P07477 247 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 HBQ1P09105 142 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 FLT3LGP49771 235 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 ERHP84090 104 aaKnown RBP4.35□□□□□ -1.71
SCN1A-202ENST00000375405 POU4F2Q12837 409 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 COL19A1Q14993 1142 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 AGERQ15109 404 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 DPY19L1Q2PZI1 675 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 GFRALQ6UXV0 394 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 SP8Q8IXZ3 490 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 ARFGAP1Q8N6T3 406 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 SIGLECL1Q8N7X8 197 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 OR13C8Q8NGS7 320 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 ERGIC2Q96RQ1 377 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 TBCBQ99426 244 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 NICN1Q9BSH3 213 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 HS3ST4Q9Y661 456 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 ZFYVE16Q7Z3T8 1539 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 OR5K4A6NMS3 321 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 PRRT4C9JH25 899 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 SMAD7O15105 426 aaKnown RBP4.35□□□□□ -1.71
SCN1A-202ENST00000375405 TOX3O15405 576 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-202ENST00000375405 GPR137BO60478 399 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 OR2C1O95371 312 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 SMIM10L2AP0DMW4 78 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 SMIM10L2BP0DMW5 78 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 BMP5P22003 454 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 OR7A5Q15622 319 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 TOR2AQ5JU69 321 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 LIPKQ5VXJ0 399 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 TBC1D26Q86UD7 250 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 NOXA1Q86UR1 476 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 TRIM74Q86UV6 250 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 TRIM73Q86UV7 250 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 OR5R1Q8NH85 324 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 FNDC9Q8TBE3 224 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 PHLDA1Q8WV24 401 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-202ENST00000375405 OIT3Q8WWZ8 545 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 C17orf75Q9HAS0 396 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 TXNL4BQ9NX01 149 aaKnown RBP4.35□□□□□ -1.71
SCN1A-202ENST00000375405 DICER1Q9UPY3 1922 aaKnown RBP4.35□□□□□ -1.71
SCN1A-202ENST00000375405 CDC42BPGQ6DT37 1551 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 NFKBIEO00221 500 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 LMX1BO60663 402 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 RHBDL1O75783 438 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 DFFBO76075 338 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 IL3P08700 152 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 SLC10A3P09131 477 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 BMP6P22004 513 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 APEX1P27695 318 aaKnown RBP4.35□□□□□ -1.71
SCN1A-202ENST00000375405 SUMO1P63165 101 aaKnown RBP4.35□□□□□ -1.71
SCN1A-202ENST00000375405 CDKN3Q16667 212 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 PDZD11Q5EBL8 140 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 SUSD1Q6UWL2 747 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 THSD4Q6ZMP0 1018 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 BPIFB2Q8N4F0 458 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 EID2Q8N6I1 236 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 OR51G2Q8NGK0 314 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 ATXN2LQ8WWM7 1075 aaKnown RBP4.35□□□□□ -1.71
SCN1A-202ENST00000375405 WNT8BQ93098 351 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 C1orf74Q96LT6 269 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 CYP2S1Q96SQ9 504 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 LPAR4Q99677 370 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 SGPP1Q9BX95 441 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 SOX17Q9H6I2 414 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-202ENST00000375405 UCK1Q9HA47 277 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 PLEKHA2Q9HB19 425 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 PNPLA3Q9NST1 481 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 TMEM140Q9NV12 185 aa4.35□□□□□ -1.71
SCN1A-202ENST00000375405 NLKQ9UBE8 527 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms