RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 C3orf49Q96BT1 292 aa16.25■□□□□ 0.19
CLN3-202ENST00000355477 CPPED1Q9BRF8 314 aaPredicted RBP16.25■□□□□ 0.19
CLN3-202ENST00000355477 ARMC7Q9H6L4 198 aa16.25■□□□□ 0.19
CLN3-202ENST00000355477 CACYBPQ9HB71 228 aaKnown RBP16.25■□□□□ 0.19
CLN3-202ENST00000355477 PLCE1Q9P212 2302 aa16.25■□□□□ 0.19
CLN3-202ENST00000355477 LIPT2A6NK58 231 aa16.24■□□□□ 0.19
CLN3-202ENST00000355477 GPR171O14626 319 aa16.24■□□□□ 0.19
CLN3-202ENST00000355477 TPST1O60507 370 aa16.24■□□□□ 0.19
CLN3-202ENST00000355477 EIF1BO60739 113 aaKnown RBP16.24■□□□□ 0.19
CLN3-202ENST00000355477 ADSLP30566 484 aaPredicted RBP16.24■□□□□ 0.19
CLN3-202ENST00000355477 IDUAP35475 653 aa16.24■□□□□ 0.19
CLN3-202ENST00000355477 OR7A5Q15622 319 aa16.24■□□□□ 0.19
CLN3-202ENST00000355477 PAQR6Q6TCH4 344 aa16.24■□□□□ 0.19
CLN3-202ENST00000355477 SEZ6L2Q6UXD5 910 aa16.24■□□□□ 0.19
CLN3-202ENST00000355477 ATG4DQ86TL0 474 aaPredicted RBP16.24■□□□□ 0.19
CLN3-202ENST00000355477 DPP10Q8N608 796 aa16.24■□□□□ 0.19
CLN3-202ENST00000355477 TMEM99Q8N816 258 aa16.24■□□□□ 0.19
CLN3-202ENST00000355477 SIKE1Q9BRV8 207 aa16.24■□□□□ 0.19
CLN3-202ENST00000355477 TMEM204Q9BSN7 226 aa16.24■□□□□ 0.19
CLN3-202ENST00000355477 NAA11Q9BSU3 229 aaPredicted RBP16.24■□□□□ 0.19
CLN3-202ENST00000355477 TMEM38AQ9H6F2 299 aa16.24■□□□□ 0.19
CLN3-202ENST00000355477 BEX4Q9NWD9 120 aaPredicted RBP16.24■□□□□ 0.19
CLN3-202ENST00000355477 LEF1Q9UJU2 399 aaPredicted RBP16.24■□□□□ 0.19
CLN3-202ENST00000355477 TRIM33Q9UPN9 1127 aa16.24■□□□□ 0.19
CLN3-202ENST00000355477 A8MVM7 634 aa16.23■□□□□ 0.19
CLN3-202ENST00000355477 EVPLLA8MZ36 301 aa16.23■□□□□ 0.19
CLN3-202ENST00000355477 AKR7A3O95154 331 aa16.23■□□□□ 0.19
CLN3-202ENST00000355477 CNOT4O95628 575 aaKnown RBP16.23■□□□□ 0.19
CLN3-202ENST00000355477 CD99P14209 185 aa16.23■□□□□ 0.19
CLN3-202ENST00000355477 COX5AP20674 150 aa16.23■□□□□ 0.19
CLN3-202ENST00000355477 HOXC12P31275 282 aa16.23■□□□□ 0.19
CLN3-202ENST00000355477 PRKAR1BP31321 381 aa16.23■□□□□ 0.19
CLN3-202ENST00000355477 FOXD4Q12950 439 aaPredicted RBP16.23■□□□□ 0.19
CLN3-202ENST00000355477 SCARB2Q14108 478 aa16.23■□□□□ 0.19
CLN3-202ENST00000355477 SELPLGQ14242 412 aa16.23■□□□□ 0.19
CLN3-202ENST00000355477 SLC17A1Q14916 467 aa16.23■□□□□ 0.19
CLN3-202ENST00000355477 GLIPR1L2Q4G1C9 344 aa16.23■□□□□ 0.19
CLN3-202ENST00000355477 FBXW9Q5XUX1 488 aa16.23■□□□□ 0.19
CLN3-202ENST00000355477 ZNF704Q6ZNC4 412 aaPredicted RBP16.23■□□□□ 0.19
CLN3-202ENST00000355477 DHDDSQ86SQ9 333 aa16.23■□□□□ 0.19
CLN3-202ENST00000355477 KRTAP1-3Q8IUG1 177 aa16.23■□□□□ 0.19
CLN3-202ENST00000355477 ZNF433Q8N7K0 673 aaPredicted RBP16.23■□□□□ 0.19
CLN3-202ENST00000355477 SLC35B4Q969S0 331 aa16.23■□□□□ 0.19
CLN3-202ENST00000355477 APH1AQ96BI3 265 aa16.23■□□□□ 0.19
CLN3-202ENST00000355477 PRR14Q9BWN1 585 aa16.23■□□□□ 0.19
CLN3-202ENST00000355477 TMEM120AQ9BXJ8 343 aa16.23■□□□□ 0.19
CLN3-202ENST00000355477 CORO2BQ9UQ03 480 aa16.23■□□□□ 0.19
CLN3-202ENST00000355477 NDUFAF1Q9Y375 327 aa16.23■□□□□ 0.19
CLN3-202ENST00000355477 FLVCR1Q9Y5Y0 555 aa16.23■□□□□ 0.19
CLN3-202ENST00000355477 ALPK2Q86TB3 2170 aa16.22■□□□□ 0.19
CLN3-202ENST00000355477 TMEM229AB2RXF0 380 aa16.22■□□□□ 0.19
CLN3-202ENST00000355477 NPIPB7O75200 414 aa16.22■□□□□ 0.19
CLN3-202ENST00000355477 MRPL33O75394 65 aaKnown RBP16.22■□□□□ 0.19
CLN3-202ENST00000355477 GPIP06744 558 aa16.22■□□□□ 0.19
CLN3-202ENST00000355477 SLC6A2P23975 617 aa16.22■□□□□ 0.19
CLN3-202ENST00000355477 NR1H2P55055 460 aa16.22■□□□□ 0.19
CLN3-202ENST00000355477 FOXG1P55316 489 aaPredicted RBP16.22■□□□□ 0.19
CLN3-202ENST00000355477 SF3A3Q12874 501 aaKnown RBP eCLIP16.22■□□□□ 0.19
CLN3-202ENST00000355477 CAPRIN1Q14444 709 aaKnown RBP16.22■□□□□ 0.19
CLN3-202ENST00000355477 OTUD3Q5T2D3 398 aaPredicted RBP16.22■□□□□ 0.19
CLN3-202ENST00000355477 DHRS4L2Q6PKH6 230 aa16.22■□□□□ 0.19
CLN3-202ENST00000355477 PTOV1Q86YD1 416 aa16.22■□□□□ 0.19
CLN3-202ENST00000355477 UBE2J2Q8N2K1 259 aa16.22■□□□□ 0.19
CLN3-202ENST00000355477 WFDC11Q8NEX6 87 aa16.22■□□□□ 0.19
CLN3-202ENST00000355477 LILRB1Q8NHL6 650 aaPredicted RBP16.22■□□□□ 0.19
CLN3-202ENST00000355477 ANKRD27Q96NW4 1050 aa16.22■□□□□ 0.19
CLN3-202ENST00000355477 CGREF1Q99674 301 aa16.22■□□□□ 0.19
CLN3-202ENST00000355477 CCL19Q99731 98 aa16.22■□□□□ 0.19
CLN3-202ENST00000355477 AQP7P3A6NL99 342 aa16.21■□□□□ 0.19
CLN3-202ENST00000355477 ANGPT2O15123 496 aa16.21■□□□□ 0.19
CLN3-202ENST00000355477 HTR2AP28223 471 aa16.21■□□□□ 0.19
CLN3-202ENST00000355477 AQP1P29972 269 aa16.21■□□□□ 0.19
CLN3-202ENST00000355477 P2RY4P51582 365 aa16.21■□□□□ 0.19
CLN3-202ENST00000355477 MTPNP58546 118 aa16.21■□□□□ 0.19
CLN3-202ENST00000355477 EGR4Q05215 589 aa16.21■□□□□ 0.19
CLN3-202ENST00000355477 STK11Q15831 433 aa16.21■□□□□ 0.19
CLN3-202ENST00000355477 NCMAPQ5T1S8 102 aa16.21■□□□□ 0.19
CLN3-202ENST00000355477 C1orf140Q5VVS0 124 aa16.21■□□□□ 0.19
CLN3-202ENST00000355477 METTL21CQ5VZV1 264 aa16.21■□□□□ 0.19
CLN3-202ENST00000355477 CGB2Q6NT52 195 aa16.21■□□□□ 0.19
CLN3-202ENST00000355477 C20orf204Q6ZNR8 217 aa16.21■□□□□ 0.19
CLN3-202ENST00000355477 KRT73Q86Y46 540 aa16.21■□□□□ 0.19
CLN3-202ENST00000355477 ZIC4Q8N9L1 334 aa16.21■□□□□ 0.19
CLN3-202ENST00000355477 TSPEARQ8WU66 669 aa16.21■□□□□ 0.19
CLN3-202ENST00000355477 PIGTQ969N2 578 aa16.21■□□□□ 0.19
CLN3-202ENST00000355477 PIP5K1AQ99755 562 aa16.21■□□□□ 0.19
CLN3-202ENST00000355477 USB1Q9BQ65 265 aaKnown RBP16.21■□□□□ 0.19
CLN3-202ENST00000355477 WFDC6Q9BQY6 131 aa16.21■□□□□ 0.19
CLN3-202ENST00000355477 FGFR1OP2Q9NVK5 253 aa16.21■□□□□ 0.19
CLN3-202ENST00000355477 ADPRHL2Q9NX46 363 aa16.21■□□□□ 0.19
CLN3-202ENST00000355477 ZANQ9Y493 2812 aa16.21■□□□□ 0.19
CLN3-202ENST00000355477 FBP2O00757 339 aa16.2■□□□□ 0.18
CLN3-202ENST00000355477 GGT1P19440 569 aa16.2■□□□□ 0.18
CLN3-202ENST00000355477 NKX6-1P78426 367 aaPredicted RBP16.2■□□□□ 0.18
CLN3-202ENST00000355477 DMTNQ08495 405 aa16.2■□□□□ 0.18
CLN3-202ENST00000355477 FAPQ12884 760 aa16.2■□□□□ 0.18
CLN3-202ENST00000355477 CASP12Q6UXS9 341 aa16.2■□□□□ 0.18
CLN3-202ENST00000355477 LSMEM1Q8N8F7 131 aa16.2■□□□□ 0.18
CLN3-202ENST00000355477 HIPK4Q8NE63 616 aa16.2■□□□□ 0.18
CLN3-202ENST00000355477 OR9K2Q8NGE7 335 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms