RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 PDSS1Q5T2R2 415 aa19.89■□□□□ 0.77
SDC3-202ENST00000339394 ZNF730Q6ZMV8 503 aa19.89■□□□□ 0.77
SDC3-202ENST00000339394 DOLPP1Q86YN1 238 aa19.89■□□□□ 0.77
SDC3-202ENST00000339394 GALNT11Q8NCW6 608 aa19.89■□□□□ 0.77
SDC3-202ENST00000339394 PFN4Q8NHR9 129 aa19.89■□□□□ 0.77
SDC3-202ENST00000339394 ALPK1Q96QP1 1244 aa19.89■□□□□ 0.77
SDC3-202ENST00000339394 REEP1Q9H902 201 aa19.89■□□□□ 0.77
SDC3-202ENST00000339394 TRAPPC4Q9Y296 219 aa19.89■□□□□ 0.77
SDC3-202ENST00000339394 MED31Q9Y3C7 131 aa19.89■□□□□ 0.77
SDC3-202ENST00000339394 SHANK1Q9Y566 2161 aa19.89■□□□□ 0.77
SDC3-202ENST00000339394 H3BNX3 289 aa19.88■□□□□ 0.77
SDC3-202ENST00000339394 GNGT2O14610 69 aa19.88■□□□□ 0.77
SDC3-202ENST00000339394 CLOCKO15516 846 aa19.88■□□□□ 0.77
SDC3-202ENST00000339394 CXCL13O43927 109 aa19.88■□□□□ 0.77
SDC3-202ENST00000339394 AHSA1O95433 338 aa19.88■□□□□ 0.77
SDC3-202ENST00000339394 IDUAP35475 653 aa19.88■□□□□ 0.77
SDC3-202ENST00000339394 LIMS1P48059 325 aa19.88■□□□□ 0.77
SDC3-202ENST00000339394 RAC3P60763 192 aa19.88■□□□□ 0.77
SDC3-202ENST00000339394 CHMP1BQ7LBR1 199 aa19.88■□□□□ 0.77
SDC3-202ENST00000339394 RNF113BQ8IZP6 322 aaKnown RBP19.88■□□□□ 0.77
SDC3-202ENST00000339394 SRXN1Q9BYN0 137 aa19.88■□□□□ 0.77
SDC3-202ENST00000339394 KLHL4Q9C0H6 718 aa19.88■□□□□ 0.77
SDC3-202ENST00000339394 TIGARQ9NQ88 270 aa19.88■□□□□ 0.77
SDC3-202ENST00000339394 C20orf141Q9NUB4 165 aa19.88■□□□□ 0.77
SDC3-202ENST00000339394 DNAJB9Q9UBS3 223 aa19.88■□□□□ 0.77
SDC3-202ENST00000339394 TINAGQ9UJW2 476 aa19.88■□□□□ 0.77
SDC3-202ENST00000339394 SAMHD1Q9Y3Z3 626 aaKnown RBP19.88■□□□□ 0.77
SDC3-202ENST00000339394 LIPT2A6NK58 231 aa19.87■□□□□ 0.77
SDC3-202ENST00000339394 FIGNL2A6NMB9 653 aa19.87■□□□□ 0.77
SDC3-202ENST00000339394 OR2T1O43869 369 aa19.87■□□□□ 0.77
SDC3-202ENST00000339394 WDR1O75083 606 aa19.87■□□□□ 0.77
SDC3-202ENST00000339394 PMS2P2O95744 297 aa19.87■□□□□ 0.77
SDC3-202ENST00000339394 GABRA1P14867 456 aa19.87■□□□□ 0.77
SDC3-202ENST00000339394 FASP25445 335 aa19.87■□□□□ 0.77
SDC3-202ENST00000339394 CSNK2A1P68400 391 aaPredicted RBP19.87■□□□□ 0.77
SDC3-202ENST00000339394 OR7A5Q15622 319 aa19.87■□□□□ 0.77
SDC3-202ENST00000339394 EXOC3L2Q2M3D2 409 aa19.87■□□□□ 0.77
SDC3-202ENST00000339394 FAM69AQ5T7M9 428 aa19.87■□□□□ 0.77
SDC3-202ENST00000339394 MBOAT2Q6ZWT7 520 aa19.87■□□□□ 0.77
SDC3-202ENST00000339394 RRM2BQ7LG56 351 aa19.87■□□□□ 0.77
SDC3-202ENST00000339394 ADGRE4PQ86SQ3 457 aa19.87■□□□□ 0.77
SDC3-202ENST00000339394 NRMQ8IXM6 262 aa19.87■□□□□ 0.77
SDC3-202ENST00000339394 OR4C15Q8NGM1 316 aa19.87■□□□□ 0.77
SDC3-202ENST00000339394 LRTOMTQ8WZ04 291 aa19.87■□□□□ 0.77
SDC3-202ENST00000339394 S100A14Q9HCY8 104 aa19.87■□□□□ 0.77
SDC3-202ENST00000339394 PAQR5Q9NXK6 330 aaPredicted RBP19.87■□□□□ 0.77
SDC3-202ENST00000339394 SH3PXD2BA1X283 911 aa19.87■□□□□ 0.77
SDC3-202ENST00000339394 CLCA1A8K7I4 914 aa19.87■□□□□ 0.77
SDC3-202ENST00000339394 FTCDNL1E5RQL4 147 aa19.87■□□□□ 0.77
SDC3-202ENST00000339394 LRRN3E7EW58 273 aa19.87■□□□□ 0.77
SDC3-202ENST00000339394 PIP5K1CO60331 668 aa19.87■□□□□ 0.77
SDC3-202ENST00000339394 DEAF1O75398 565 aaPredicted RBP19.87■□□□□ 0.77
SDC3-202ENST00000339394 FCGR1AP12314 374 aa19.87■□□□□ 0.77
SDC3-202ENST00000339394 FPR1P21462 350 aa19.87■□□□□ 0.77
SDC3-202ENST00000339394 IST1P53990 364 aa19.87■□□□□ 0.77
SDC3-202ENST00000339394 OR2B6P58173 313 aa19.87■□□□□ 0.77
SDC3-202ENST00000339394 LTBQ06643 244 aa19.87■□□□□ 0.77
SDC3-202ENST00000339394 ATP6AP1Q15904 470 aa19.87■□□□□ 0.77
SDC3-202ENST00000339394 PLXDC2Q6UX71 529 aa19.87■□□□□ 0.77
SDC3-202ENST00000339394 C3P1Q6ZMU1 363 aa19.87■□□□□ 0.77
SDC3-202ENST00000339394 OR4K5Q8NGD3 323 aa19.87■□□□□ 0.77
SDC3-202ENST00000339394 MFSD8Q8NHS3 518 aa19.87■□□□□ 0.77
SDC3-202ENST00000339394 SLC25A36Q96CQ1 311 aa19.87■□□□□ 0.77
SDC3-202ENST00000339394 TP63Q9H3D4 680 aaPredicted RBP19.87■□□□□ 0.77
SDC3-202ENST00000339394 NTN4Q9HB63 628 aa19.87■□□□□ 0.77
SDC3-202ENST00000339394 TMCC3Q9ULS5 477 aa19.87■□□□□ 0.77
SDC3-202ENST00000339394 OSGIN2Q9Y236 505 aa19.87■□□□□ 0.77
SDC3-202ENST00000339394 ZNF462Q96JM2 2506 aa19.86■□□□□ 0.77
SDC3-202ENST00000339394 NBASA2RRP1 2371 aa19.86■□□□□ 0.77
SDC3-202ENST00000339394 RP1L1Q8IWN7 2480 aaPredicted RBP19.86■□□□□ 0.77
SDC3-202ENST00000339394 ENO4A6NNW6 628 aa19.86■□□□□ 0.77
SDC3-202ENST00000339394 KDM4EB2RXH2 506 aaPredicted RBP19.86■□□□□ 0.77
SDC3-202ENST00000339394 LDLRP01130 860 aa19.86■□□□□ 0.77
SDC3-202ENST00000339394 IGF2P01344 180 aa19.86■□□□□ 0.77
SDC3-202ENST00000339394 ACVR2AP27037 513 aa19.86■□□□□ 0.77
SDC3-202ENST00000339394 PTGER4P35408 488 aa19.86■□□□□ 0.77
SDC3-202ENST00000339394 ELF3P78545 371 aaPredicted RBP19.86■□□□□ 0.77
SDC3-202ENST00000339394 PON3Q15166 354 aa19.86■□□□□ 0.77
SDC3-202ENST00000339394 ACSF3Q4G176 576 aaPredicted RBP19.86■□□□□ 0.77
SDC3-202ENST00000339394 RTL6Q6ICC9 239 aa19.86■□□□□ 0.77
SDC3-202ENST00000339394 STMN2Q93045 179 aa19.86■□□□□ 0.77
SDC3-202ENST00000339394 CPNE4Q96A23 557 aaPredicted RBP19.86■□□□□ 0.77
SDC3-202ENST00000339394 MOGAT1Q96PD6 335 aa19.86■□□□□ 0.77
SDC3-202ENST00000339394 TRIB1Q96RU8 372 aa19.86■□□□□ 0.77
SDC3-202ENST00000339394 TAPBPLQ9BX59 468 aa19.86■□□□□ 0.77
SDC3-202ENST00000339394 SH3BGRL2Q9UJC5 107 aa19.86■□□□□ 0.77
SDC3-202ENST00000339394 CH25HO95992 272 aa19.85■□□□□ 0.77
SDC3-202ENST00000339394 ENPP1P22413 925 aa19.85■□□□□ 0.77
SDC3-202ENST00000339394 CBLP22681 906 aa19.85■□□□□ 0.77
SDC3-202ENST00000339394 SLC35A1P78382 337 aa19.85■□□□□ 0.77
SDC3-202ENST00000339394 LAPTM4AQ15012 233 aa19.85■□□□□ 0.77
SDC3-202ENST00000339394 SF3B4Q15427 424 aaKnown RBP eCLIP19.85■□□□□ 0.77
SDC3-202ENST00000339394 ZNF74Q16587 644 aa19.85■□□□□ 0.77
SDC3-202ENST00000339394 AMIGO2Q86SJ2 522 aa19.85■□□□□ 0.77
SDC3-202ENST00000339394 ATCAYQ86WG3 371 aa19.85■□□□□ 0.77
SDC3-202ENST00000339394 C10orf53Q8N6V4 93 aa19.85■□□□□ 0.77
SDC3-202ENST00000339394 OR6S1Q8NH40 331 aa19.85■□□□□ 0.77
SDC3-202ENST00000339394 FNDC9Q8TBE3 224 aa19.85■□□□□ 0.77
SDC3-202ENST00000339394 BPIFA2Q96DR5 249 aa19.85■□□□□ 0.77
SDC3-202ENST00000339394 FAM215AQ9Y5M1 114 aa19.85■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms