RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 AHSA1O95433 338 aa13.49□□□□□ -0.25
CCDC88C-202ENST00000334448 CH25HO95992 272 aa13.49□□□□□ -0.25
CCDC88C-202ENST00000334448 PRKAR1AP10644 381 aa13.49□□□□□ -0.25
CCDC88C-202ENST00000334448 PTNP21246 168 aa13.49□□□□□ -0.25
CCDC88C-202ENST00000334448 SLC6A6P31641 620 aa13.49□□□□□ -0.25
CCDC88C-202ENST00000334448 MASP1P48740 699 aa13.49□□□□□ -0.25
CCDC88C-202ENST00000334448 OC90Q02509 493 aaPredicted RBP13.49□□□□□ -0.25
CCDC88C-202ENST00000334448 LTBQ06643 244 aa13.49□□□□□ -0.25
CCDC88C-202ENST00000334448 SELENBP1Q13228 472 aa13.49□□□□□ -0.25
CCDC88C-202ENST00000334448 OR1C1Q15619 314 aa13.49□□□□□ -0.25
CCDC88C-202ENST00000334448 OCLNQ16625 522 aa13.49□□□□□ -0.25
CCDC88C-202ENST00000334448 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.49□□□□□ -0.25
CCDC88C-202ENST00000334448 C1orf140Q5VVS0 124 aa13.49□□□□□ -0.25
CCDC88C-202ENST00000334448 C3orf33Q6P1S2 294 aa13.49□□□□□ -0.25
CCDC88C-202ENST00000334448 THSD4Q6ZMP0 1018 aa13.49□□□□□ -0.25
CCDC88C-202ENST00000334448 IQCF1Q8N6M8 205 aa13.49□□□□□ -0.25
CCDC88C-202ENST00000334448 CNIH3Q8TBE1 160 aa13.49□□□□□ -0.25
CCDC88C-202ENST00000334448 TAAR8Q969N4 342 aa13.49□□□□□ -0.25
CCDC88C-202ENST00000334448 SAMD8Q96LT4 415 aa13.49□□□□□ -0.25
CCDC88C-202ENST00000334448 FAM173AQ9BQD7 235 aa13.49□□□□□ -0.25
CCDC88C-202ENST00000334448 OR2B2Q9GZK3 357 aa13.49□□□□□ -0.25
CCDC88C-202ENST00000334448 DUSP21Q9H596 190 aa13.49□□□□□ -0.25
CCDC88C-202ENST00000334448 ZFP64Q9NPA5 681 aa13.49□□□□□ -0.25
CCDC88C-202ENST00000334448 NANSQ9NR45 359 aa13.49□□□□□ -0.25
CCDC88C-202ENST00000334448 SERINC1Q9NRX5 453 aa13.49□□□□□ -0.25
CCDC88C-202ENST00000334448 DEPPQ9NTK1 212 aa13.49□□□□□ -0.25
CCDC88C-202ENST00000334448 BOKQ9UMX3 212 aaPredicted RBP13.49□□□□□ -0.25
CCDC88C-202ENST00000334448 CORINQ9Y5Q5 1042 aa13.49□□□□□ -0.25
CCDC88C-202ENST00000334448 CEP295Q9C0D2 2601 aa13.48□□□□□ -0.25
CCDC88C-202ENST00000334448 A0A0G2JMM0 328 aa13.48□□□□□ -0.25
CCDC88C-202ENST00000334448 A0A1W2PPB8 328 aa13.48□□□□□ -0.25
CCDC88C-202ENST00000334448 A0A1W2PRS3 328 aa13.48□□□□□ -0.25
CCDC88C-202ENST00000334448 ZC3H12DA2A288 527 aaKnown RBP13.48□□□□□ -0.25
CCDC88C-202ENST00000334448 KIR3DP1A8MWS1 328 aa13.48□□□□□ -0.25
CCDC88C-202ENST00000334448 ARPC3O15145 178 aa13.48□□□□□ -0.25
CCDC88C-202ENST00000334448 SURF4O15260 269 aa13.48□□□□□ -0.25
CCDC88C-202ENST00000334448 IDH3BO43837 385 aa13.48□□□□□ -0.25
CCDC88C-202ENST00000334448 GMFGO60234 142 aa13.48□□□□□ -0.25
CCDC88C-202ENST00000334448 NME2P1O60361 137 aa13.48□□□□□ -0.25
CCDC88C-202ENST00000334448 ZIC3O60481 467 aa13.48□□□□□ -0.25
CCDC88C-202ENST00000334448 NME2P22392 152 aa13.48□□□□□ -0.25
CCDC88C-202ENST00000334448 DPP4P27487 766 aa13.48□□□□□ -0.25
CCDC88C-202ENST00000334448 HYAL4Q2M3T9 481 aa13.48□□□□□ -0.25
CCDC88C-202ENST00000334448 MEDAGQ5VYS4 303 aa13.48□□□□□ -0.25
CCDC88C-202ENST00000334448 DPY19L2P2Q6ZN68 376 aa13.48□□□□□ -0.25
CCDC88C-202ENST00000334448 PTCHD4Q6ZW05 846 aa13.48□□□□□ -0.25
CCDC88C-202ENST00000334448 MAMDC2Q7Z304 686 aaPredicted RBP13.48□□□□□ -0.25
CCDC88C-202ENST00000334448 SCAIQ8N9R8 606 aa13.48□□□□□ -0.25
CCDC88C-202ENST00000334448 LRRC75AQ8NAA5 344 aa13.48□□□□□ -0.25
CCDC88C-202ENST00000334448 MFSD8Q8NHS3 518 aa13.48□□□□□ -0.25
CCDC88C-202ENST00000334448 TMEM163Q8TC26 289 aa13.48□□□□□ -0.25
CCDC88C-202ENST00000334448 UBE2FQ969M7 185 aa13.48□□□□□ -0.25
CCDC88C-202ENST00000334448 DDIT4LQ96D03 193 aa13.48□□□□□ -0.25
CCDC88C-202ENST00000334448 SCMH1Q96GD3 660 aa13.48□□□□□ -0.25
CCDC88C-202ENST00000334448 Q96MT0 163 aa13.48□□□□□ -0.25
CCDC88C-202ENST00000334448 MOGAT1Q96PD6 335 aa13.48□□□□□ -0.25
CCDC88C-202ENST00000334448 SIGLEC12Q96PQ1 595 aa13.48□□□□□ -0.25
CCDC88C-202ENST00000334448 TNFRSF13CQ96RJ3 184 aa13.48□□□□□ -0.25
CCDC88C-202ENST00000334448 SIGLEC11Q96RL6 698 aa13.48□□□□□ -0.25
CCDC88C-202ENST00000334448 NPAS1Q99742 590 aa13.48□□□□□ -0.25
CCDC88C-202ENST00000334448 MRPS26Q9BYN8 205 aaKnown RBP13.48□□□□□ -0.25
CCDC88C-202ENST00000334448 NDEL1Q9GZM8 345 aa13.48□□□□□ -0.25
CCDC88C-202ENST00000334448 FN3KQ9H479 309 aa13.48□□□□□ -0.25
CCDC88C-202ENST00000334448 FANCFQ9NPI8 374 aa13.48□□□□□ -0.25
CCDC88C-202ENST00000334448 NRIP3Q9NQ35 241 aa13.48□□□□□ -0.25
CCDC88C-202ENST00000334448 CMC2Q9NRP2 79 aa13.48□□□□□ -0.25
CCDC88C-202ENST00000334448 FKBP14Q9NWM8 211 aa13.48□□□□□ -0.25
CCDC88C-202ENST00000334448 ANKRD10Q9NXR5 420 aa13.48□□□□□ -0.25
CCDC88C-202ENST00000334448 VDAC3Q9Y277 283 aa13.48□□□□□ -0.25
CCDC88C-202ENST00000334448 KLF13Q9Y2Y9 288 aaPredicted RBP13.48□□□□□ -0.25
CCDC88C-202ENST00000334448 SLC6A5Q9Y345 797 aa13.48□□□□□ -0.25
CCDC88C-202ENST00000334448 DOCK10Q96BY6 2186 aa13.48□□□□□ -0.25
CCDC88C-202ENST00000334448 TRAV27A0A087WT01 109 aa13.47□□□□□ -0.25
CCDC88C-202ENST00000334448 A0A087WXM4 84 aa13.47□□□□□ -0.25
CCDC88C-202ENST00000334448 EFNA2O43921 213 aa13.47□□□□□ -0.25
CCDC88C-202ENST00000334448 PRKYO43930 277 aa13.47□□□□□ -0.25
CCDC88C-202ENST00000334448 PEPDP12955 493 aa13.47□□□□□ -0.25
CCDC88C-202ENST00000334448 DNASE1L1P49184 302 aa13.47□□□□□ -0.25
CCDC88C-202ENST00000334448 SLC35A2P78381 396 aa13.47□□□□□ -0.25
CCDC88C-202ENST00000334448 SGCBQ16585 318 aa13.47□□□□□ -0.25
CCDC88C-202ENST00000334448 ZNF239Q16600 458 aaKnown RBP13.47□□□□□ -0.25
CCDC88C-202ENST00000334448 SYT14P1Q58G82 188 aa13.47□□□□□ -0.25
CCDC88C-202ENST00000334448 ARHGAP11AQ6P4F7 1023 aa13.47□□□□□ -0.25
CCDC88C-202ENST00000334448 ZNF773Q6PK81 442 aa13.47□□□□□ -0.25
CCDC88C-202ENST00000334448 LINC00696Q6ZRV3 163 aa13.47□□□□□ -0.25
CCDC88C-202ENST00000334448 LRRC17Q8N6Y2 441 aa13.47□□□□□ -0.25
CCDC88C-202ENST00000334448 ADPRHL1Q8NDY3 354 aa13.47□□□□□ -0.25
CCDC88C-202ENST00000334448 TSPAN14Q8NG11 270 aa13.47□□□□□ -0.25
CCDC88C-202ENST00000334448 OR2M7Q8NG81 312 aa13.47□□□□□ -0.25
CCDC88C-202ENST00000334448 OR51A7Q8NH64 312 aa13.47□□□□□ -0.25
CCDC88C-202ENST00000334448 IPCEF1Q8WWN9 437 aaPredicted RBP13.47□□□□□ -0.25
CCDC88C-202ENST00000334448 GNRHR2Q96P88 292 aa13.47□□□□□ -0.25
CCDC88C-202ENST00000334448 ENKD1Q9H0I2 346 aa13.47□□□□□ -0.25
CCDC88C-202ENST00000334448 CCNB1IP1Q9NPC3 277 aa13.47□□□□□ -0.25
CCDC88C-202ENST00000334448 BATF3Q9NR55 127 aa13.47□□□□□ -0.25
CCDC88C-202ENST00000334448 RASSF1Q9NS23 344 aa13.47□□□□□ -0.25
CCDC88C-202ENST00000334448 MRPL39Q9NYK5 338 aaKnown RBP13.47□□□□□ -0.25
CCDC88C-202ENST00000334448 TVP23BQ9NYZ1 205 aa13.47□□□□□ -0.25
CCDC88C-202ENST00000334448 TPRKBQ9Y3C4 175 aa13.47□□□□□ -0.25
CCDC88C-202ENST00000334448 HDGFL3Q9Y3E1 203 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms