RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 STK35Q8TDR2 534 aa9.46□□□□□ -0.9
CHD3-201ENST00000330494 SLAMF7Q9NQ25 335 aa9.46□□□□□ -0.9
CHD3-201ENST00000330494 SPHK1Q9NYA1 384 aa9.46□□□□□ -0.9
CHD3-201ENST00000330494 SNAPC5O75971 98 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 HOXB9P17482 250 aaPredicted RBP9.45□□□□□ -0.9
CHD3-201ENST00000330494 HLA-DMAP28067 261 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 PFN4Q8NHR9 129 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 TMEM269A0A1B0GVZ9 245 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 ANKRD28O15084 1053 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 IGHG1P01857 330 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 CD46P15529 392 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 PRSS3P35030 304 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 SSR4P51571 173 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 OTUD1Q5VV17 481 aaPredicted RBP9.45□□□□□ -0.9
CHD3-201ENST00000330494 SIRT6Q8N6T7 355 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 OR8J2Q8NGG1 315 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 ZFP90Q8TF47 636 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 GLYATL2Q8WU03 294 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 RSC1A1Q92681 617 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 MICU1Q9BPX6 476 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 VN1R3Q9BXE9 311 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 PITHD1Q9GZP4 211 aaPredicted RBP9.45□□□□□ -0.9
CHD3-201ENST00000330494 ASF1BQ9NVP2 202 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 TMEM45AQ9NWC5 275 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 TMEM72A0PK05 275 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 PLPP1O14494 284 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 SOCS6O14544 535 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 CHRNB1P11230 501 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 PPP5CP53041 499 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 FRMPD2BQ6IN97 320 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 PXKQ7Z7A4 578 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 CCDC74AQ96AQ1 378 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 NAA50Q9GZZ1 169 aaKnown RBP9.45□□□□□ -0.9
CHD3-201ENST00000330494 ZNF705GA8MUZ8 300 aaPredicted RBP9.45□□□□□ -0.9
CHD3-201ENST00000330494 TSTD3H0UI37 97 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 IFNA17P01571 189 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 HTR5AP47898 357 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 ADARB1P78563 741 aaKnown RBP9.45□□□□□ -0.9
CHD3-201ENST00000330494 BTN1A1Q13410 526 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 SLC6A19Q695T7 634 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 PAPD4Q6PIY7 484 aaKnown RBP9.45□□□□□ -0.9
CHD3-201ENST00000330494 SLC2A12Q8TD20 617 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 FGF14Q92915 247 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 HYLS1Q96M11 299 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 B3GNT2Q9NY97 397 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 C7orf72A4D263 438 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 AP1G1O43747 822 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 OR2T1O43869 369 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 PRKYO43930 277 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 MRPL33O75394 65 aaKnown RBP9.45□□□□□ -0.9
CHD3-201ENST00000330494 KCNK5O95279 499 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 CTGFP29279 349 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 DEFA6Q01524 100 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 TMEM52BQ4KMG9 183 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 ZNF529Q6P280 563 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 RBM45Q8IUH3 476 aaKnown RBP9.45□□□□□ -0.9
CHD3-201ENST00000330494 ARL14Q8N4G2 192 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 OR5D14Q8NGL3 314 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 SNIP1Q8TAD8 396 aaKnown RBP9.45□□□□□ -0.9
CHD3-201ENST00000330494 IFI44Q8TCB0 444 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 UBE2FQ969M7 185 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 ZC3HAV1LQ96H79 300 aaKnown RBP9.45□□□□□ -0.9
CHD3-201ENST00000330494 ENPP5Q9UJA9 477 aa9.45□□□□□ -0.9
CHD3-201ENST00000330494 ACOD1A6NK06 481 aa9.44□□□□□ -0.9
CHD3-201ENST00000330494 IFNA5P01569 189 aa9.44□□□□□ -0.9
CHD3-201ENST00000330494 CRHBPP24387 322 aa9.44□□□□□ -0.9
CHD3-201ENST00000330494 NUDT1P36639 197 aa9.44□□□□□ -0.9
CHD3-201ENST00000330494 AKR1C8PQ5T2L2 129 aa9.44□□□□□ -0.9
CHD3-201ENST00000330494 LHX8Q68G74 356 aa9.44□□□□□ -0.9
CHD3-201ENST00000330494 FAM198BQ6UWH4 519 aa9.44□□□□□ -0.9
CHD3-201ENST00000330494 OR5D18Q8NGL1 313 aa9.44□□□□□ -0.9
CHD3-201ENST00000330494 OR14A16Q8NHC5 309 aa9.44□□□□□ -0.9
CHD3-201ENST00000330494 RRNAD1Q96FB5 475 aaKnown RBP9.44□□□□□ -0.9
CHD3-201ENST00000330494 UTP23Q9BRU9 249 aaKnown RBP9.44□□□□□ -0.9
CHD3-201ENST00000330494 UBE2ZQ9H832 354 aaPredicted RBP9.44□□□□□ -0.9
CHD3-201ENST00000330494 ACKR4Q9NPB9 350 aa9.44□□□□□ -0.9
CHD3-201ENST00000330494 BOKQ9UMX3 212 aaPredicted RBP9.44□□□□□ -0.9
CHD3-201ENST00000330494 NTNG1Q9Y2I2 539 aa9.44□□□□□ -0.9
CHD3-201ENST00000330494 A0A1B0GTW7 788 aa9.44□□□□□ -0.9
CHD3-201ENST00000330494 LRRTM2O43300 516 aa9.44□□□□□ -0.9
CHD3-201ENST00000330494 B4GALT3O60512 393 aa9.44□□□□□ -0.9
CHD3-201ENST00000330494 ITGAMP11215 1152 aa9.44□□□□□ -0.9
CHD3-201ENST00000330494 GPR85P60893 370 aa9.44□□□□□ -0.9
CHD3-201ENST00000330494 PPP2CBP62714 309 aa9.44□□□□□ -0.9
CHD3-201ENST00000330494 PPP2CAP67775 309 aa9.44□□□□□ -0.9
CHD3-201ENST00000330494 NKX6-1P78426 367 aaPredicted RBP9.44□□□□□ -0.9
CHD3-201ENST00000330494 LCN10Q6JVE6 187 aa9.44□□□□□ -0.9
CHD3-201ENST00000330494 KIAA1211LQ6NV74 962 aa9.44□□□□□ -0.9
CHD3-201ENST00000330494 NMNAT3Q96T66 252 aa9.44□□□□□ -0.9
CHD3-201ENST00000330494 ACSS1Q9NUB1 689 aaPredicted RBP9.44□□□□□ -0.9
CHD3-201ENST00000330494 ABRACLQ9P1F3 81 aa9.44□□□□□ -0.9
CHD3-201ENST00000330494 SERINC4A6NH21 518 aa9.44□□□□□ -0.9
CHD3-201ENST00000330494 ACTL6BO94805 426 aa9.44□□□□□ -0.9
CHD3-201ENST00000330494 PTPN6P29350 595 aa9.44□□□□□ -0.9
CHD3-201ENST00000330494 BIDP55957 195 aa9.44□□□□□ -0.9
CHD3-201ENST00000330494 METRNLQ641Q3 311 aa9.44□□□□□ -0.9
CHD3-201ENST00000330494 ZNF704Q6ZNC4 412 aaPredicted RBP9.44□□□□□ -0.9
CHD3-201ENST00000330494 LIN37Q96GY3 246 aaPredicted RBP9.44□□□□□ -0.9
CHD3-201ENST00000330494 NIPSNAP1Q9BPW8 284 aa9.44□□□□□ -0.9
CHD3-201ENST00000330494 PRDM9Q9NQV7 894 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms