RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 NKX3-2P78367 333 aa7.4□□□□□ -1.23
CIITA-201ENST00000324288 SOWAHCQ53LP3 525 aaPredicted RBP7.4□□□□□ -1.23
CIITA-201ENST00000324288 FIGLAQ6QHK4 219 aa7.4□□□□□ -1.23
CIITA-201ENST00000324288 GTF2H5Q6ZYL4 71 aa7.4□□□□□ -1.23
CIITA-201ENST00000324288 MS4A15Q8N5U1 240 aa7.4□□□□□ -1.23
CIITA-201ENST00000324288 OR2T4Q8NH00 348 aa7.4□□□□□ -1.23
CIITA-201ENST00000324288 ALOXE3Q9BYJ1 711 aa7.4□□□□□ -1.23
CIITA-201ENST00000324288 CAMK2AQ9UQM7 478 aa7.4□□□□□ -1.23
CIITA-201ENST00000324288 ARHGAP33O14559 1287 aa7.4□□□□□ -1.23
CIITA-201ENST00000324288 TIMP2P16035 220 aa7.4□□□□□ -1.23
CIITA-201ENST00000324288 TM4SF1P30408 202 aa7.4□□□□□ -1.23
CIITA-201ENST00000324288 PHYHD1Q5SRE7 291 aa7.4□□□□□ -1.23
CIITA-201ENST00000324288 ZNF691Q5VV52 312 aa7.4□□□□□ -1.23
CIITA-201ENST00000324288 BATF2Q8N1L9 274 aa7.4□□□□□ -1.23
CIITA-201ENST00000324288 ZNF461Q8TAF7 563 aa7.4□□□□□ -1.23
CIITA-201ENST00000324288 ZNF596Q8TC21 504 aa7.4□□□□□ -1.23
CIITA-201ENST00000324288 C1orf74Q96LT6 269 aa7.4□□□□□ -1.23
CIITA-201ENST00000324288 PCDHGA1Q9Y5H4 931 aa7.4□□□□□ -1.23
CIITA-201ENST00000324288 PARP4Q9UKK3 1724 aaKnown RBP7.4□□□□□ -1.23
CIITA-201ENST00000324288 SLIT2O94813 1529 aa7.4□□□□□ -1.23
CIITA-201ENST00000324288 PRSS44E7EML9 344 aa7.4□□□□□ -1.23
CIITA-201ENST00000324288 LAMTOR5O43504 91 aa7.4□□□□□ -1.23
CIITA-201ENST00000324288 SOD2P04179 222 aa7.4□□□□□ -1.23
CIITA-201ENST00000324288 SLC10A2Q12908 348 aaPredicted RBP7.4□□□□□ -1.23
CIITA-201ENST00000324288 SULF2Q8IWU5 870 aa7.4□□□□□ -1.23
CIITA-201ENST00000324288 FAM58AQ8N1B3 248 aa7.4□□□□□ -1.23
CIITA-201ENST00000324288 OR10Z1Q8NGY1 313 aa7.4□□□□□ -1.23
CIITA-201ENST00000324288 NPY6RQ99463 290 aa7.4□□□□□ -1.23
CIITA-201ENST00000324288 ACOD1A6NK06 481 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 GPX3P22352 226 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 FOXA1P55317 472 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 ARHGAP19Q14CB8 494 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 DPPA4Q7L190 304 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 LRP11Q86VZ4 500 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 CDS1Q92903 461 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 RTP3Q9BQQ7 232 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 PGAP2Q9UHJ9 254 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 A0A087WUU8 490 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 ANKUB1A6NFN9 424 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 RDH16O75452 317 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 PCSK2P16519 638 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 RAB3AP20336 220 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 PDLIM3Q53GG5 364 aaPredicted RBP7.39□□□□□ -1.23
CIITA-201ENST00000324288 SBSNQ6UWP8 590 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 OR5L2Q8NGL0 311 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 OR5AR1Q8NGP9 310 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 OR13C9Q8NGT0 318 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 BADQ92934 168 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 SYT3Q9BQG1 590 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 MROH1Q8NDA8 1641 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 PTHP01270 115 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 BCKDHBP21953 392 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 TMUB2Q71RG4 321 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 NAA40Q86UY6 237 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 SIMC1Q8NDZ2 872 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 GPR148Q8TDV2 347 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 SECTM1Q8WVN6 248 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 FYTTD1Q96QD9 318 aaKnown RBP7.39□□□□□ -1.23
CIITA-201ENST00000324288 FAM124BQ9H5Z6 455 aaPredicted RBP7.39□□□□□ -1.23
CIITA-201ENST00000324288 V9GY05 133 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 TAF1P21675 1872 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 TERTO14746 1132 aaKnown RBP7.39□□□□□ -1.23
CIITA-201ENST00000324288 POU3F2P20265 443 aaPredicted RBP7.39□□□□□ -1.23
CIITA-201ENST00000324288 MMP12P39900 470 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 GPR17Q13304 367 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 DEFB133Q30KQ1 61 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 ARHGAP11BQ3KRB8 267 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 ABHD12BQ7Z5M8 362 aaPredicted RBP7.39□□□□□ -1.23
CIITA-201ENST00000324288 NPWQ8N729 165 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 KDM1BQ8NB78 822 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 RNF128Q8TEB7 428 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 MARC2Q969Z3 335 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 ANKRD9Q96BM1 317 aaPredicted RBP7.39□□□□□ -1.23
CIITA-201ENST00000324288 REEP6Q96HR9 211 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 SYT17Q9BSW7 474 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 CPEB1Q9BZB8 566 aaKnown RBP7.39□□□□□ -1.23
CIITA-201ENST00000324288 CHRDQ9H2X0 955 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 OCEL1Q9H607 264 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 KIF25Q9UIL4 384 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 A0A0D9SG52 128 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 C17orf113A0A1B0GUU1 675 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 ANKRD30BLA7E2S9 258 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 G3V3Y1 287 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 H7C1C5 153 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 ATG12O94817 140 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 LCN6P62502 163 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 KCNC3Q14003 757 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 RFPL4BQ6ZWI9 263 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 TXNDC15Q96J42 360 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 MVB12BQ9H7P6 319 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 CHST11Q9NPF2 352 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 EXO1Q9UQ84 846 aaKnown RBP7.39□□□□□ -1.23
CIITA-201ENST00000324288 KIF13AQ9H1H9 1805 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 PRR14LQ5THK1 2151 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 FABP7O15540 132 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 OR2T1O43869 369 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 SOCS5O75159 536 aa7.39□□□□□ -1.23
CIITA-201ENST00000324288 ANXA7P20073 488 aaKnown RBP7.39□□□□□ -1.23
CIITA-201ENST00000324288 APEX1P27695 318 aaKnown RBP7.39□□□□□ -1.23
CIITA-201ENST00000324288 TRIM23P36406 574 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms