RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 PCGF3Q3KNV8 242 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 KHDRBS2Q5VWX1 349 aaKnown RBP12.43□□□□□ -0.42
SKA3-201ENST00000298260 LRRTM1Q86UE6 522 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 CMTM8Q8IZV2 173 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 OR1M1Q8NGA1 313 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 OR6K3Q8NGY3 331 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 PHOSPHO1Q8TCT1 267 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 ACOT11Q8WXI4 607 aaPredicted RBP12.43□□□□□ -0.42
SKA3-201ENST00000298260 PELI1Q96FA3 418 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 PINK1Q9BXM7 581 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 TEX12Q9BXU0 123 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 SLC38A1Q9H2H9 487 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 TRBV2A0A0J9YWF9 115 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 TMEM218A2RU14 115 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 RNGTTO60942 597 aaKnown RBP12.43□□□□□ -0.42
SKA3-201ENST00000298260 ACTL6AO96019 429 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 STAT5AP42229 794 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 NRG3P56975 720 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 BLOC1S1P78537 153 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 TGIF1Q15583 401 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 ZNF704Q6ZNC4 412 aaPredicted RBP12.43□□□□□ -0.42
SKA3-201ENST00000298260 SLC36A1Q7Z2H8 476 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 TMED4Q7Z7H5 227 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 TMEM17Q86X19 198 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 TRAPPC5Q8IUR0 188 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 LINC00471Q8N535 108 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 OR51S1Q8NGJ8 323 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 OR4C16Q8NGL9 310 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 EDARADDQ8WWZ3 215 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 RAD51AP1Q96B01 352 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 TSPAN10Q9H1Z9 355 aaPredicted RBP12.43□□□□□ -0.42
SKA3-201ENST00000298260 MARCH5Q9NX47 278 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 EMC3Q9P0I2 261 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 GNG8Q9UK08 70 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 FOXJ3Q9UPW0 622 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 ZNF337Q9Y3M9 751 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 SLC22A7Q9Y694 548 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 EIF4E2O60573 245 aaKnown RBP12.42□□□□□ -0.42
SKA3-201ENST00000298260 CSF2RBP32927 897 aa12.42□□□□□ -0.42
SKA3-201ENST00000298260 PDZK1IP1Q13113 114 aa12.42□□□□□ -0.42
SKA3-201ENST00000298260 OR7A5Q15622 319 aa12.42□□□□□ -0.42
SKA3-201ENST00000298260 PLEKHN1Q494U1 663 aaPredicted RBP12.42□□□□□ -0.42
SKA3-201ENST00000298260 LIN54Q6MZP7 749 aa12.42□□□□□ -0.42
SKA3-201ENST00000298260 H3F3CQ6NXT2 135 aa12.42□□□□□ -0.42
SKA3-201ENST00000298260 FUT10Q6P4F1 479 aa12.42□□□□□ -0.42
SKA3-201ENST00000298260 MAMSTRQ6ZN01 415 aa12.42□□□□□ -0.42
SKA3-201ENST00000298260 PTDSS2Q9BVG9 487 aa12.42□□□□□ -0.42
SKA3-201ENST00000298260 PITHD1Q9GZP4 211 aaPredicted RBP12.42□□□□□ -0.42
SKA3-201ENST00000298260 SPHK1Q9NYA1 384 aa12.42□□□□□ -0.42
SKA3-201ENST00000298260 PQLC2LA1A4F0 135 aa12.42□□□□□ -0.42
SKA3-201ENST00000298260 K7ESM1 405 aa12.42□□□□□ -0.42
SKA3-201ENST00000298260 SYT5O00445 386 aa12.42□□□□□ -0.42
SKA3-201ENST00000298260 MAN2B1O00754 1011 aa12.42□□□□□ -0.42
SKA3-201ENST00000298260 STX11O75558 287 aa12.42□□□□□ -0.42
SKA3-201ENST00000298260 POP7O75817 140 aaKnown RBP12.42□□□□□ -0.42
SKA3-201ENST00000298260 ECDO95905 644 aaPredicted RBP12.42□□□□□ -0.42
SKA3-201ENST00000298260 DPP4P27487 766 aa12.42□□□□□ -0.42
SKA3-201ENST00000298260 SOX2P48431 317 aa12.42□□□□□ -0.42
SKA3-201ENST00000298260 SLC11A1P49279 550 aa12.42□□□□□ -0.42
SKA3-201ENST00000298260 PDX1P52945 283 aa12.42□□□□□ -0.42
SKA3-201ENST00000298260 ODF4Q2M2E3 257 aa12.42□□□□□ -0.42
SKA3-201ENST00000298260 ELFN2Q5R3F8 820 aa12.42□□□□□ -0.42
SKA3-201ENST00000298260 MOB3CQ70IA8 216 aa12.42□□□□□ -0.42
SKA3-201ENST00000298260 FBXO22Q8NEZ5 403 aa12.42□□□□□ -0.42
SKA3-201ENST00000298260 OR5AR1Q8NGP9 310 aa12.42□□□□□ -0.42
SKA3-201ENST00000298260 SUN3Q8TAQ9 357 aa12.42□□□□□ -0.42
SKA3-201ENST00000298260 SLC25A32Q9H2D1 315 aa12.42□□□□□ -0.42
SKA3-201ENST00000298260 USP36Q9P275 1121 aaKnown RBP12.42□□□□□ -0.42
SKA3-201ENST00000298260 OR5V1Q9UGF6 321 aa12.42□□□□□ -0.42
SKA3-201ENST00000298260 FAM96BQ9Y3D0 163 aa12.42□□□□□ -0.42
SKA3-201ENST00000298260 NPIPA5A0A0B4J1W7 369 aa12.41□□□□□ -0.42
SKA3-201ENST00000298260 NPIPA7E9PJI5 369 aa12.41□□□□□ -0.42
SKA3-201ENST00000298260 KLF4O43474 513 aa12.41□□□□□ -0.42
SKA3-201ENST00000298260 FGBP02675 491 aa12.41□□□□□ -0.42
SKA3-201ENST00000298260 NPIPA8P0DM63 369 aa12.41□□□□□ -0.42
SKA3-201ENST00000298260 F3P13726 295 aa12.41□□□□□ -0.42
SKA3-201ENST00000298260 SRMP19623 302 aa12.41□□□□□ -0.42
SKA3-201ENST00000298260 EDNRAP25101 427 aa12.41□□□□□ -0.42
SKA3-201ENST00000298260 SNRPD1P62314 119 aaKnown RBP12.41□□□□□ -0.42
SKA3-201ENST00000298260 PPIAP62937 165 aaKnown RBP12.41□□□□□ -0.42
SKA3-201ENST00000298260 FOXK2Q01167 660 aa12.41□□□□□ -0.42
SKA3-201ENST00000298260 TAF13Q15543 124 aa12.41□□□□□ -0.42
SKA3-201ENST00000298260 SP7Q8TDD2 431 aaPredicted RBP12.41□□□□□ -0.42
SKA3-201ENST00000298260 ZNRF4Q8WWF5 429 aa12.41□□□□□ -0.42
SKA3-201ENST00000298260 DEFB118Q96PH6 123 aa12.41□□□□□ -0.42
SKA3-201ENST00000298260 BBS4Q96RK4 519 aa12.41□□□□□ -0.42
SKA3-201ENST00000298260 OR2AG1Q9H205 316 aa12.41□□□□□ -0.42
SKA3-201ENST00000298260 ACSS1Q9NUB1 689 aaPredicted RBP12.41□□□□□ -0.42
SKA3-201ENST00000298260 C2orf42Q9NWW7 574 aa12.41□□□□□ -0.42
SKA3-201ENST00000298260 MYEF2Q9P2K5 600 aaKnown RBP12.41□□□□□ -0.42
SKA3-201ENST00000298260 MIOXQ9UGB7 285 aa12.41□□□□□ -0.42
SKA3-201ENST00000298260 ZNF346Q9UL40 294 aaKnown RBP12.41□□□□□ -0.42
SKA3-201ENST00000298260 LRFN2Q9ULH4 789 aa12.41□□□□□ -0.42
SKA3-201ENST00000298260 PCYT1BQ9Y5K3 369 aaPredicted RBP12.41□□□□□ -0.42
SKA3-201ENST00000298260 A0A1W2PPE3 182 aa12.41□□□□□ -0.42
SKA3-201ENST00000298260 IFITM5A6NNB3 132 aa12.41□□□□□ -0.42
SKA3-201ENST00000298260 FAM171A2A8MVW0 826 aa12.41□□□□□ -0.42
SKA3-201ENST00000298260 BHLHE40O14503 412 aa12.41□□□□□ -0.42
SKA3-201ENST00000298260 FARS2O95363 451 aaKnown RBP12.41□□□□□ -0.42
SKA3-201ENST00000298260 PPP1R3DO95685 299 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms