RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 CAPSLQ8WWF8 208 aa18.36■□□□□ 0.53
VPS53-201ENST00000291074 PELI1Q96FA3 418 aa18.36■□□□□ 0.53
VPS53-201ENST00000291074 RNF121Q9H920 327 aa18.36■□□□□ 0.53
VPS53-201ENST00000291074 SLC2A4RGQ9NR83 387 aa18.36■□□□□ 0.53
VPS53-201ENST00000291074 DHCR7Q9UBM7 475 aaKnown RBP18.36■□□□□ 0.53
VPS53-201ENST00000291074 COPS3Q9UNS2 423 aa18.36■□□□□ 0.53
VPS53-201ENST00000291074 FAM171A2A8MVW0 826 aa18.36■□□□□ 0.53
VPS53-201ENST00000291074 SC5DO75845 299 aa18.36■□□□□ 0.53
VPS53-201ENST00000291074 OR7A10O76100 309 aa18.36■□□□□ 0.53
VPS53-201ENST00000291074 POU4F2Q12837 409 aa18.36■□□□□ 0.53
VPS53-201ENST00000291074 UBXN2BQ14CS0 331 aa18.36■□□□□ 0.53
VPS53-201ENST00000291074 SAMD12Q8N8I0 201 aa18.36■□□□□ 0.53
VPS53-201ENST00000291074 NPEPL1Q8NDH3 523 aa18.36■□□□□ 0.53
VPS53-201ENST00000291074 OR4M1Q8NGD0 313 aa18.36■□□□□ 0.53
VPS53-201ENST00000291074 OR6K6Q8NGW6 343 aa18.36■□□□□ 0.53
VPS53-201ENST00000291074 ZNF486Q96H40 463 aaPredicted RBP18.36■□□□□ 0.53
VPS53-201ENST00000291074 UCK1Q9HA47 277 aa18.36■□□□□ 0.53
VPS53-201ENST00000291074 PRODH2Q9UF12 536 aa18.36■□□□□ 0.53
VPS53-201ENST00000291074 GMEB2Q9UKD1 530 aa18.36■□□□□ 0.53
VPS53-201ENST00000291074 ADAM30Q9UKF2 790 aa18.36■□□□□ 0.53
VPS53-201ENST00000291074 ZNF346Q9UL40 294 aaKnown RBP18.36■□□□□ 0.53
VPS53-201ENST00000291074 N6AMT1Q9Y5N5 214 aa18.36■□□□□ 0.53
VPS53-201ENST00000291074 SLC19A2O60779 497 aa18.35■□□□□ 0.53
VPS53-201ENST00000291074 PSKH1P11801 424 aa18.35■□□□□ 0.53
VPS53-201ENST00000291074 RCVRNP35243 200 aa18.35■□□□□ 0.53
VPS53-201ENST00000291074 SLC37A1P57057 533 aa18.35■□□□□ 0.53
VPS53-201ENST00000291074 TCTE1Q5JU00 501 aa18.35■□□□□ 0.53
VPS53-201ENST00000291074 PXKQ7Z7A4 578 aa18.35■□□□□ 0.53
VPS53-201ENST00000291074 SLC35F2Q8IXU6 374 aa18.35■□□□□ 0.53
VPS53-201ENST00000291074 ACOT12Q8WYK0 555 aa18.35■□□□□ 0.53
VPS53-201ENST00000291074 ZNF578Q96N58 590 aaPredicted RBP18.35■□□□□ 0.53
VPS53-201ENST00000291074 FOXQ1Q9C009 403 aa18.35■□□□□ 0.53
VPS53-201ENST00000291074 DDX28Q9NUL7 540 aaKnown RBP18.35■□□□□ 0.53
VPS53-201ENST00000291074 NUFIP1Q9UHK0 495 aaKnown RBP18.35■□□□□ 0.53
VPS53-201ENST00000291074 CEP192Q8TEP8 1941 aa18.35■□□□□ 0.53
VPS53-201ENST00000291074 ALPK2Q86TB3 2170 aa18.35■□□□□ 0.53
VPS53-201ENST00000291074 C17orf51A8MQB3 221 aa18.35■□□□□ 0.53
VPS53-201ENST00000291074 GRPRP30550 384 aa18.35■□□□□ 0.53
VPS53-201ENST00000291074 RPS5P46782 204 aaKnown RBP18.35■□□□□ 0.53
VPS53-201ENST00000291074 EFNA3P52797 238 aa18.35■□□□□ 0.53
VPS53-201ENST00000291074 TDGQ13569 410 aa18.35■□□□□ 0.53
VPS53-201ENST00000291074 QPRTQ15274 297 aa18.35■□□□□ 0.53
VPS53-201ENST00000291074 SF3B4Q15427 424 aaKnown RBP eCLIP18.35■□□□□ 0.535e-6■■■■■ 28.2
VPS53-201ENST00000291074 ZSWIM7Q19AV6 140 aa18.35■□□□□ 0.53
VPS53-201ENST00000291074 SNAP47Q5SQN1 464 aa18.35■□□□□ 0.53
VPS53-201ENST00000291074 C6orf183Q5T699 404 aa18.35■□□□□ 0.53
VPS53-201ENST00000291074 FNDC7Q5VTL7 733 aa18.35■□□□□ 0.53
VPS53-201ENST00000291074 C17orf82Q86X59 251 aaPredicted RBP18.35■□□□□ 0.53
VPS53-201ENST00000291074 UBASH3BQ8TF42 649 aa18.35■□□□□ 0.53
VPS53-201ENST00000291074 FRMD6Q96NE9 622 aa18.35■□□□□ 0.53
VPS53-201ENST00000291074 MOGAT1Q96PD6 335 aa18.35■□□□□ 0.53
VPS53-201ENST00000291074 CTRCQ99895 268 aa18.35■□□□□ 0.53
VPS53-201ENST00000291074 BEX2Q9BXY8 128 aa18.35■□□□□ 0.53
VPS53-201ENST00000291074 TTYH1Q9H313 450 aaPredicted RBP18.35■□□□□ 0.53
VPS53-201ENST00000291074 CUTCQ9NTM9 273 aa18.35■□□□□ 0.53
VPS53-201ENST00000291074 KLHL21Q9UJP4 597 aa18.35■□□□□ 0.53
VPS53-201ENST00000291074 ZNF337Q9Y3M9 751 aa18.35■□□□□ 0.53
VPS53-201ENST00000291074 TP53BP1Q12888 1972 aaPredicted RBP18.34■□□□□ 0.53
VPS53-201ENST00000291074 ELOA3DA6NLF2 546 aaPredicted RBP18.34■□□□□ 0.53
VPS53-201ENST00000291074 H0YIG0 161 aa18.34■□□□□ 0.53
VPS53-201ENST00000291074 BLOC1S5-TXNDC5H3BN57 136 aa18.34■□□□□ 0.53
VPS53-201ENST00000291074 HPGDP15428 266 aa18.34■□□□□ 0.53
VPS53-201ENST00000291074 MST1P26927 711 aa18.34■□□□□ 0.53
VPS53-201ENST00000291074 PSMB10P40306 273 aa18.34■□□□□ 0.53
VPS53-201ENST00000291074 NRG3P56975 720 aa18.34■□□□□ 0.53
VPS53-201ENST00000291074 IFITM2Q01629 132 aa18.34■□□□□ 0.53
VPS53-201ENST00000291074 SERTAD2Q14140 314 aa18.34■□□□□ 0.53
VPS53-201ENST00000291074 GRM7Q14831 915 aa18.34■□□□□ 0.53
VPS53-201ENST00000291074 ELOA3BQ3SY89 546 aa18.34■□□□□ 0.53
VPS53-201ENST00000291074 DPY19L2P2Q6ZN68 376 aa18.34■□□□□ 0.53
VPS53-201ENST00000291074 SLC43A2Q8N370 569 aa18.34■□□□□ 0.53
VPS53-201ENST00000291074 C10orf53Q8N6V4 93 aa18.34■□□□□ 0.53
VPS53-201ENST00000291074 FAM71CQ8NEG0 241 aa18.34■□□□□ 0.53
VPS53-201ENST00000291074 ELOA3Q8NG57 546 aa18.34■□□□□ 0.53
VPS53-201ENST00000291074 FAM174AQ8TBP5 190 aa18.34■□□□□ 0.53
VPS53-201ENST00000291074 WACQ9BTA9 647 aa18.34■□□□□ 0.53
VPS53-201ENST00000291074 NRSN2Q9GZP1 204 aa18.34■□□□□ 0.53
VPS53-201ENST00000291074 NRIP3Q9NQ35 241 aa18.34■□□□□ 0.53
VPS53-201ENST00000291074 ACOXLQ9NUZ1 547 aa18.34■□□□□ 0.53
VPS53-201ENST00000291074 GNG8Q9UK08 70 aa18.34■□□□□ 0.53
VPS53-201ENST00000291074 PCDHGB7Q9Y5F8 929 aa18.34■□□□□ 0.53
VPS53-201ENST00000291074 CABIN1Q9Y6J0 2220 aa18.34■□□□□ 0.53
VPS53-201ENST00000291074 FITM1A5D6W6 292 aa18.34■□□□□ 0.53
VPS53-201ENST00000291074 TMEM150CB9EJG8 249 aa18.34■□□□□ 0.53
VPS53-201ENST00000291074 PSMD9O00233 223 aa18.34■□□□□ 0.53
VPS53-201ENST00000291074 LYRM1O43325 122 aa18.34■□□□□ 0.53
VPS53-201ENST00000291074 PPM1BO75688 479 aa18.34■□□□□ 0.53
VPS53-201ENST00000291074 OR2B3O76000 313 aa18.34■□□□□ 0.53
VPS53-201ENST00000291074 SPI1P17947 270 aa18.34■□□□□ 0.53
VPS53-201ENST00000291074 CD53P19397 219 aa18.34■□□□□ 0.53
VPS53-201ENST00000291074 AQP2P41181 271 aa18.34■□□□□ 0.53
VPS53-201ENST00000291074 OR1D5P58170 312 aa18.34■□□□□ 0.53
VPS53-201ENST00000291074 RPL6Q02878 288 aaKnown RBP18.34■□□□□ 0.53
VPS53-201ENST00000291074 SKP2Q13309 424 aa18.34■□□□□ 0.53
VPS53-201ENST00000291074 RIN1Q13671 783 aa18.34■□□□□ 0.53
VPS53-201ENST00000291074 PON3Q15166 354 aa18.34■□□□□ 0.53
VPS53-201ENST00000291074 TRILQ7L0X0 811 aa18.34■□□□□ 0.53
VPS53-201ENST00000291074 DNAJA3Q96EY1 480 aa18.34■□□□□ 0.53
VPS53-201ENST00000291074 Q96M85 177 aa18.34■□□□□ 0.53
VPS53-201ENST00000291074 HSPA12BQ96MM6 686 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms