RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 HAVCR2Q8TDQ0 301 aa13.25□□□□□ -0.29
SDC1-201ENST00000254351 CAMK1GQ96NX5 476 aa13.25□□□□□ -0.29
SDC1-201ENST00000254351 IL21RQ9HBE5 538 aa13.25□□□□□ -0.29
SDC1-201ENST00000254351 MRPL17Q9NRX2 175 aaKnown RBP13.25□□□□□ -0.29
SDC1-201ENST00000254351 GLS2Q9UI32 602 aa13.25□□□□□ -0.29
SDC1-201ENST00000254351 A0A0G2JPF8 293 aa13.24□□□□□ -0.29
SDC1-201ENST00000254351 A0A1W2PQ45 241 aaPredicted RBP13.24□□□□□ -0.29
SDC1-201ENST00000254351 A0A1W2PQY0 241 aa13.24□□□□□ -0.29
SDC1-201ENST00000254351 LINC00587B1AMM8 73 aa13.24□□□□□ -0.29
SDC1-201ENST00000254351 HNRNPCL3B7ZW38 293 aa13.24□□□□□ -0.29
SDC1-201ENST00000254351 PEX12O00623 359 aa13.24□□□□□ -0.29
SDC1-201ENST00000254351 ZNF806P0C7X5 589 aa13.24□□□□□ -0.29
SDC1-201ENST00000254351 HNRNPCL4P0DMR1 293 aa13.24□□□□□ -0.29
SDC1-201ENST00000254351 ITPKBP27987 946 aa13.24□□□□□ -0.29
SDC1-201ENST00000254351 ACADLP28330 430 aa13.24□□□□□ -0.29
SDC1-201ENST00000254351 EPHB3P54753 998 aa13.24□□□□□ -0.29
SDC1-201ENST00000254351 NRG3P56975 720 aa13.24□□□□□ -0.29
SDC1-201ENST00000254351 UBE2NLQ5JXB2 153 aa13.24□□□□□ -0.29
SDC1-201ENST00000254351 ZNF626Q68DY1 528 aa13.24□□□□□ -0.29
SDC1-201ENST00000254351 FAM199XQ6PEV8 388 aaPredicted RBP13.24□□□□□ -0.29
SDC1-201ENST00000254351 FIGNL1Q6PIW4 674 aa13.24□□□□□ -0.29
SDC1-201ENST00000254351 FAM111BQ6SJ93 734 aa13.24□□□□□ -0.29
SDC1-201ENST00000254351 MAMSTRQ6ZN01 415 aa13.24□□□□□ -0.29
SDC1-201ENST00000254351 PXKQ7Z7A4 578 aa13.24□□□□□ -0.29
SDC1-201ENST00000254351 ZNF546Q86UE3 836 aa13.24□□□□□ -0.29
SDC1-201ENST00000254351 S100A16Q96FQ6 103 aaKnown RBP13.24□□□□□ -0.29
SDC1-201ENST00000254351 HS6ST2Q96MM7 605 aa13.24□□□□□ -0.29
SDC1-201ENST00000254351 TNFRSF13CQ96RJ3 184 aa13.24□□□□□ -0.29
SDC1-201ENST00000254351 C1QTNF2Q9BXJ5 285 aa13.24□□□□□ -0.29
SDC1-201ENST00000254351 RHBGQ9H310 441 aa13.24□□□□□ -0.29
SDC1-201ENST00000254351 CDC123O75794 336 aaPredicted RBP13.24□□□□□ -0.29
SDC1-201ENST00000254351 FLI1Q01543 452 aaPredicted RBP13.24□□□□□ -0.29
SDC1-201ENST00000254351 MAPK14Q16539 360 aa13.24□□□□□ -0.29
SDC1-201ENST00000254351 ZNRF4Q8WWF5 429 aa13.24□□□□□ -0.29
SDC1-201ENST00000254351 SLC35A4Q96G79 324 aa13.24□□□□□ -0.29
SDC1-201ENST00000254351 SLC6A5Q9Y345 797 aa13.24□□□□□ -0.29
SDC1-201ENST00000254351 ADAM18Q9Y3Q7 739 aa13.24□□□□□ -0.29
SDC1-201ENST00000254351 NPFFR2Q9Y5X5 522 aa13.24□□□□□ -0.29
SDC1-201ENST00000254351 TCF20Q9UGU0 1960 aaKnown RBP13.24□□□□□ -0.29
SDC1-201ENST00000254351 GON4LQ3T8J9 2241 aa13.24□□□□□ -0.29
SDC1-201ENST00000254351 TRBV23-1A0A0A0MS06 115 aa13.24□□□□□ -0.29
SDC1-201ENST00000254351 OR2M5A3KFT3 312 aa13.24□□□□□ -0.29
SDC1-201ENST00000254351 SIGLEC6O43699 453 aa13.24□□□□□ -0.29
SDC1-201ENST00000254351 PRAMEF2O60811 474 aa13.24□□□□□ -0.29
SDC1-201ENST00000254351 AKR7A3O95154 331 aa13.24□□□□□ -0.29
SDC1-201ENST00000254351 MAOBP27338 520 aa13.24□□□□□ -0.29
SDC1-201ENST00000254351 MAT1AQ00266 395 aaKnown RBP13.24□□□□□ -0.29
SDC1-201ENST00000254351 IKZF1Q13422 519 aa13.24□□□□□ -0.29
SDC1-201ENST00000254351 SLC9A5Q14940 896 aa13.24□□□□□ -0.29
SDC1-201ENST00000254351 PUS10Q3MIT2 529 aaKnown RBP13.24□□□□□ -0.29
SDC1-201ENST00000254351 B3GNTL1Q67FW5 361 aaPredicted RBP13.24□□□□□ -0.29
SDC1-201ENST00000254351 DMKNQ6E0U4 476 aaPredicted RBP13.24□□□□□ -0.29
SDC1-201ENST00000254351 TMPRSS12Q86WS5 348 aa13.24□□□□□ -0.29
SDC1-201ENST00000254351 PUSL1Q8N0Z8 303 aaKnown RBP13.24□□□□□ -0.29
SDC1-201ENST00000254351 EXO5Q9H790 373 aa13.24□□□□□ -0.29
SDC1-201ENST00000254351 ADAP2Q9NPF8 381 aa13.24□□□□□ -0.29
SDC1-201ENST00000254351 CLDND1Q9NY35 253 aa13.24□□□□□ -0.29
SDC1-201ENST00000254351 TAS2R5Q9NYW4 299 aa13.24□□□□□ -0.29
SDC1-201ENST00000254351 ABRACLQ9P1F3 81 aa13.24□□□□□ -0.29
SDC1-201ENST00000254351 HS3ST2Q9Y278 367 aa13.24□□□□□ -0.29
SDC1-201ENST00000254351 WDR45Q9Y484 360 aa13.24□□□□□ -0.29
SDC1-201ENST00000254351 F8W036 122 aa13.23□□□□□ -0.29
SDC1-201ENST00000254351 LEFTY2O00292 366 aa13.23□□□□□ -0.29
SDC1-201ENST00000254351 GRM6O15303 877 aa13.23□□□□□ -0.29
SDC1-201ENST00000254351 ARL6IP5O75915 188 aa13.23□□□□□ -0.29
SDC1-201ENST00000254351 PCDH8O95206 1070 aa13.23□□□□□ -0.29
SDC1-201ENST00000254351 HPP00738 406 aa13.23□□□□□ -0.29
SDC1-201ENST00000254351 SERPINA3P01011 423 aa13.23□□□□□ -0.29
SDC1-201ENST00000254351 NT5EP21589 574 aa13.23□□□□□ -0.29
SDC1-201ENST00000254351 FAM69AQ5T7M9 428 aa13.23□□□□□ -0.29
SDC1-201ENST00000254351 TSSK4Q6SA08 328 aa13.23□□□□□ -0.29
SDC1-201ENST00000254351 TMEFF1Q8IYR6 380 aa13.23□□□□□ -0.29
SDC1-201ENST00000254351 OR6V1Q8N148 313 aa13.23□□□□□ -0.29
SDC1-201ENST00000254351 TIFAQ96CG3 184 aa13.23□□□□□ -0.29
SDC1-201ENST00000254351 BPIFA2Q96DR5 249 aa13.23□□□□□ -0.29
SDC1-201ENST00000254351 PTCHD1Q96NR3 888 aa13.23□□□□□ -0.29
SDC1-201ENST00000254351 GFI1Q99684 422 aa13.23□□□□□ -0.29
SDC1-201ENST00000254351 PDCD10Q9BUL8 212 aa13.23□□□□□ -0.29
SDC1-201ENST00000254351 ULBP3Q9BZM4 244 aa13.23□□□□□ -0.29
SDC1-201ENST00000254351 AICDAQ9GZX7 198 aa13.23□□□□□ -0.29
SDC1-201ENST00000254351 SLC22A31A6NKX4 558 aa13.23□□□□□ -0.29
SDC1-201ENST00000254351 PIN1P1O15428 100 aa13.23□□□□□ -0.29
SDC1-201ENST00000254351 AIFM1O95831 613 aa13.23□□□□□ -0.29
SDC1-201ENST00000254351 DLX5P56178 289 aa13.23□□□□□ -0.29
SDC1-201ENST00000254351 SIRPAP78324 504 aa13.23□□□□□ -0.29
SDC1-201ENST00000254351 SHC2P98077 582 aa13.23□□□□□ -0.29
SDC1-201ENST00000254351 FGL1Q08830 312 aa13.23□□□□□ -0.29
SDC1-201ENST00000254351 FAM209BQ5JX69 171 aa13.23□□□□□ -0.29
SDC1-201ENST00000254351 ZNF836Q6ZNA1 936 aa13.23□□□□□ -0.29
SDC1-201ENST00000254351 TMEM272A0A1B0GTI8 110 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 OR6C68A6NDL8 312 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 BHLHE40O14503 412 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 PRAF2O60831 178 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 SPP1P10451 314 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 GTF2F2P13984 249 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 AKR1C3P42330 323 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 GMFBP60983 142 aa13.22□□□□□ -0.29
SDC1-201ENST00000254351 SNRPNP63162 240 aaKnown RBP13.22□□□□□ -0.29
SDC1-201ENST00000254351 SRSF3P84103 164 aaKnown RBP13.22□□□□□ -0.29
SDC1-201ENST00000254351 ELAVL2Q12926 359 aaKnown RBP13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms