RNA–Protein interactions for RNA: ENST00000251739.9

VPS50-201, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS50, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-201ENST00000251739 ASB6Q9NWX5 421 aa9.05□□□□□ -0.96
VPS50-201ENST00000251739 MGAT4BQ9UQ53 548 aa9.05□□□□□ -0.96
VPS50-201ENST00000251739 TRAPPC4Q9Y296 219 aa9.05□□□□□ -0.96
VPS50-201ENST00000251739 NOSIPQ9Y314 301 aaKnown RBP9.05□□□□□ -0.96
VPS50-201ENST00000251739 FLVCR1Q9Y5Y0 555 aa9.05□□□□□ -0.96
VPS50-201ENST00000251739 AGAP5A6NIR3 686 aa9.04□□□□□ -0.96
VPS50-201ENST00000251739 AP3D1O14617 1153 aa9.04□□□□□ -0.96
VPS50-201ENST00000251739 ZNF208O43345 1280 aa9.04□□□□□ -0.96
VPS50-201ENST00000251739 SSX4O60224 188 aa9.04□□□□□ -0.96
VPS50-201ENST00000251739 GPRIN2O60269 458 aa9.04□□□□□ -0.96
VPS50-201ENST00000251739 TFPIP10646 304 aa9.04□□□□□ -0.96
VPS50-201ENST00000251739 IMPDH2P12268 514 aa9.04□□□□□ -0.96
VPS50-201ENST00000251739 PTNP21246 168 aa9.04□□□□□ -0.96
VPS50-201ENST00000251739 RYKP34925 604 aa9.04□□□□□ -0.96
VPS50-201ENST00000251739 ZNF83P51522 516 aa9.04□□□□□ -0.96
VPS50-201ENST00000251739 KCNJ10P78508 379 aa9.04□□□□□ -0.96
VPS50-201ENST00000251739 VLDLRP98155 873 aa9.04□□□□□ -0.96
VPS50-201ENST00000251739 CHRNEQ04844 493 aa9.04□□□□□ -0.96
VPS50-201ENST00000251739 LOXL1Q08397 574 aaPredicted RBP9.04□□□□□ -0.96
VPS50-201ENST00000251739 SLC17A1Q14916 467 aa9.04□□□□□ -0.96
VPS50-201ENST00000251739 TMEM249Q2WGJ8 235 aa9.04□□□□□ -0.96
VPS50-201ENST00000251739 C6orf52Q5T4I8 152 aa9.04□□□□□ -0.96
VPS50-201ENST00000251739 ATAD3BQ5T9A4 648 aa9.04□□□□□ -0.96
VPS50-201ENST00000251739 ANXA8L1Q5VT79 327 aa9.04□□□□□ -0.96
VPS50-201ENST00000251739 OR7E24Q6IFN5 339 aa9.04□□□□□ -0.96
VPS50-201ENST00000251739 OGFOD2Q6N063 350 aa9.04□□□□□ -0.96
VPS50-201ENST00000251739 NUDCD3Q8IVD9 361 aa9.04□□□□□ -0.96
VPS50-201ENST00000251739 CMIPQ8IY22 773 aa9.04□□□□□ -0.96
VPS50-201ENST00000251739 C17orf78Q8N4C9 275 aa9.04□□□□□ -0.96
VPS50-201ENST00000251739 OR52N5Q8NH56 324 aa9.04□□□□□ -0.96
VPS50-201ENST00000251739 XAGE5Q8WWM1 108 aa9.04□□□□□ -0.96
VPS50-201ENST00000251739 BOD1Q96IK1 185 aa9.04□□□□□ -0.96
VPS50-201ENST00000251739 TRNT1Q96Q11 434 aaKnown RBP9.04□□□□□ -0.96
VPS50-201ENST00000251739 CITED4Q96RK1 184 aa9.04□□□□□ -0.96
VPS50-201ENST00000251739 DPY30Q9C005 99 aa9.04□□□□□ -0.96
VPS50-201ENST00000251739 TMEM181Q9P2C4 612 aa9.04□□□□□ -0.96
VPS50-201ENST00000251739 DCTN4Q9UJW0 460 aa9.04□□□□□ -0.96
VPS50-201ENST00000251739 OSGIN1Q9UJX0 560 aa9.04□□□□□ -0.96
VPS50-201ENST00000251739 PCDHGB4Q9UN71 923 aa9.04□□□□□ -0.96
VPS50-201ENST00000251739 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.04□□□□□ -0.96
VPS50-201ENST00000251739 RAP2CQ9Y3L5 183 aa9.04□□□□□ -0.96
VPS50-201ENST00000251739 A0A1W2PR80 420 aa9.03□□□□□ -0.96
VPS50-201ENST00000251739 ZC3H12DA2A288 527 aaKnown RBP9.03□□□□□ -0.96
VPS50-201ENST00000251739 A8MV72 311 aaPredicted RBP9.03□□□□□ -0.96
VPS50-201ENST00000251739 E9PBE3 544 aa9.03□□□□□ -0.96
VPS50-201ENST00000251739 BIRC5O15392 142 aa9.03□□□□□ -0.96
VPS50-201ENST00000251739 SNUPNO95149 360 aaKnown RBP9.03□□□□□ -0.96
VPS50-201ENST00000251739 CHRM4P08173 479 aa9.03□□□□□ -0.96
VPS50-201ENST00000251739 ALDOCP09972 364 aaKnown RBP9.03□□□□□ -0.96
VPS50-201ENST00000251739 MYZAPP0CAP1 466 aa9.03□□□□□ -0.96
VPS50-201ENST00000251739 HTR3AP46098 478 aa9.03□□□□□ -0.96
VPS50-201ENST00000251739 MAP2K6P52564 334 aa9.03□□□□□ -0.96
VPS50-201ENST00000251739 NUDT6P53370 316 aa9.03□□□□□ -0.96
VPS50-201ENST00000251739 CLNS1AP54105 237 aaKnown RBP9.03□□□□□ -0.96
VPS50-201ENST00000251739 DSCR9P59020 149 aa9.03□□□□□ -0.96
VPS50-201ENST00000251739 ABCE1P61221 599 aaKnown RBP9.03□□□□□ -0.96
VPS50-201ENST00000251739 IFFO1Q0D2I5 559 aa9.03□□□□□ -0.96
VPS50-201ENST00000251739 MAPK11Q15759 364 aa9.03□□□□□ -0.96
VPS50-201ENST00000251739 CHI3L2Q15782 390 aa9.03□□□□□ -0.96
VPS50-201ENST00000251739 FAM174BQ3ZCQ3 159 aa9.03□□□□□ -0.96
VPS50-201ENST00000251739 HMBOX1Q6NT76 420 aa9.03□□□□□ -0.96
VPS50-201ENST00000251739 ZNF544Q6NX49 715 aa9.03□□□□□ -0.96
VPS50-201ENST00000251739 KLHL17Q6TDP4 642 aa9.03□□□□□ -0.96
VPS50-201ENST00000251739 HMGN2P46Q86SG4 172 aa9.03□□□□□ -0.96
VPS50-201ENST00000251739 PHC2Q8IXK0 858 aa9.03□□□□□ -0.96
VPS50-201ENST00000251739 UBE2J2Q8N2K1 259 aa9.03□□□□□ -0.96
VPS50-201ENST00000251739 MUC15Q8N387 334 aa9.03□□□□□ -0.96
VPS50-201ENST00000251739 MREGQ8N565 214 aa9.03□□□□□ -0.96
VPS50-201ENST00000251739 ARFGAP2Q8N6H7 521 aa9.03□□□□□ -0.96
VPS50-201ENST00000251739 ANKFN1Q8N957 763 aa9.03□□□□□ -0.96
VPS50-201ENST00000251739 ZIC4Q8N9L1 334 aa9.03□□□□□ -0.96
VPS50-201ENST00000251739 OR52E4Q8NGH9 312 aa9.03□□□□□ -0.96
VPS50-201ENST00000251739 ZNF563Q8TA94 476 aa9.03□□□□□ -0.96
VPS50-201ENST00000251739 TMEM45BQ96B21 275 aa9.03□□□□□ -0.96
VPS50-201ENST00000251739 DNAJA3Q96EY1 480 aa9.03□□□□□ -0.96
VPS50-201ENST00000251739 TEX37Q96LM6 180 aa9.03□□□□□ -0.96
VPS50-201ENST00000251739 PPP1R36Q96LQ0 422 aa9.03□□□□□ -0.96
VPS50-201ENST00000251739 ADAD1Q96M93 576 aaKnown RBP9.03□□□□□ -0.96
VPS50-201ENST00000251739 TNFRSF13CQ96RJ3 184 aa9.03□□□□□ -0.96
VPS50-201ENST00000251739 SLC35A5Q9BS91 424 aa9.03□□□□□ -0.96
VPS50-201ENST00000251739 RHNO1Q9BSD3 238 aa9.03□□□□□ -0.96
VPS50-201ENST00000251739 INPP5KQ9BT40 448 aa9.03□□□□□ -0.96
VPS50-201ENST00000251739 MEAF6Q9HAF1 191 aa9.03□□□□□ -0.96
VPS50-201ENST00000251739 SSU72Q9NP77 194 aaKnown RBP9.03□□□□□ -0.96
VPS50-201ENST00000251739 SLC17A5Q9NRA2 495 aa9.03□□□□□ -0.96
VPS50-201ENST00000251739 YAE1D1Q9NRH1 226 aa9.03□□□□□ -0.96
VPS50-201ENST00000251739 SLC7A10Q9NS82 523 aa9.03□□□□□ -0.96
VPS50-201ENST00000251739 ST6GALNAC1Q9NSC7 600 aaPredicted RBP9.03□□□□□ -0.96
VPS50-201ENST00000251739 TMEM160Q9NX00 188 aa9.03□□□□□ -0.96
VPS50-201ENST00000251739 MARCOQ9UEW3 520 aaPredicted RBP9.03□□□□□ -0.96
VPS50-201ENST00000251739 BTNL2Q9UIR0 455 aa9.03□□□□□ -0.96
VPS50-201ENST00000251739 SLC9A8Q9Y2E8 581 aa9.03□□□□□ -0.96
VPS50-201ENST00000251739 DSPPQ9NZW4 1301 aa9.03□□□□□ -0.96
VPS50-201ENST00000251739 TENM1Q9UKZ4 2725 aa9.02□□□□□ -0.97
VPS50-201ENST00000251739 TMED7-TICAM2A0A0A6YYA0 188 aa9.02□□□□□ -0.97
VPS50-201ENST00000251739 CIB4A0PJX0 185 aa9.02□□□□□ -0.97
VPS50-201ENST00000251739 TMEM72A0PK05 275 aa9.02□□□□□ -0.97
VPS50-201ENST00000251739 FAM234BA2RU67 622 aa9.02□□□□□ -0.97
VPS50-201ENST00000251739 CCT8L1PA6NM43 557 aa9.02□□□□□ -0.97
VPS50-201ENST00000251739 EIF1BO60739 113 aaKnown RBP9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms