RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 T-ENOLP0DO92 83 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 CTSAP10619 480 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 HNRNPA2B1P22626 353 aaKnown RBP2.62□□□□□ -1.99
SCN1A-219ENST00000641575 NPY1RP25929 384 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 SLC5A2P31639 672 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 BDKRB1P46663 353 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 GABARAPL2P60520 117 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 NPRL3Q12980 569 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 PGM5Q15124 567 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF718Q3SXZ3 478 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF836Q6ZNA1 936 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 CLNKQ7Z7G1 428 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF34Q8IZ26 560 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 PROKR2Q8NFJ6 384 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 C11orf40Q8WZ69 217 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 C16orf92Q96LL3 132 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 TMPRSS5Q9H3S3 457 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF576Q9H609 170 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF586Q9NXT0 402 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 NPFFR2Q9Y5X5 522 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 RGPD1P0DJD0 1748 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 NWD1Q149M9 1564 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 TRPM7Q96QT4 1865 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 TMEM72A0PK05 275 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF732B4DXR9 585 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 ALOX15BO15296 676 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 RAB5AP20339 215 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 GJA5P36382 358 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 FLI1Q01543 452 aaPredicted RBP2.61□□□□□ -1.99
SCN1A-219ENST00000641575 C17orf67Q0P5P2 114 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 OR8B8Q15620 311 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 AMHR2Q16671 573 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 ABLIM2Q6H8Q1 611 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 JMJD6Q6NYC1 403 aaPredicted RBP2.61□□□□□ -1.99
SCN1A-219ENST00000641575 CLEC9AQ6UXN8 241 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 YRDCQ86U90 279 aaKnown RBP2.61□□□□□ -1.99
SCN1A-219ENST00000641575 NIPA2Q8N8Q9 360 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 BBS10Q8TAM1 723 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 PHOSPHO1Q8TCT1 267 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 PAQR8Q8TEZ7 354 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 MYLIPQ8WY64 445 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 WNT8BQ93098 351 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 TMEM18Q96B42 140 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 ROPN1LQ96C74 230 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 RNF157Q96PX1 679 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 FOXC2Q99958 501 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 DOHHQ9BU89 302 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 SEMA4CQ9C0C4 833 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 OR51V1Q9H2C8 321 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 CERS4Q9HA82 394 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 FKBP11Q9NYL4 201 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 LRRC42Q9Y546 428 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 FOCADQ5VW36 1801 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 SCN11AQ9UI33 1791 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF727A8MUV8 499 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 SIGLEC6O43699 453 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 PRAMEF4O60810 478 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 OR2C1O95371 312 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 SGPL1O95470 568 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 NSA2O95478 260 aaKnown RBP2.61□□□□□ -1.99
SCN1A-219ENST00000641575 C1SP09871 688 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 PTNP21246 168 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 CPOXP36551 454 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 ETV3P41162 512 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 NCBP2P52298 156 aaKnown RBP eCLIP2.61□□□□□ -1.992e-9■□□□□ 10.6
SCN1A-219ENST00000641575 HTR4Q13639 388 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 FXNQ16595 210 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 MPEG1Q2M385 716 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 CDNFQ49AH0 187 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 CELF3Q5SZQ8 465 aaKnown RBP2.61□□□□□ -1.99
SCN1A-219ENST00000641575 MFSD5Q6N075 450 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 SLC22A25Q6T423 547 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 KDM8Q8N371 416 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 PTGR2Q8N8N7 351 aaPredicted RBP2.61□□□□□ -1.99
SCN1A-219ENST00000641575 HSD17B11Q8NBQ5 300 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 GIMAP1Q8WWP7 306 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 EXTL1Q92935 676 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 EAF2Q96CJ1 260 aaPredicted RBP2.61□□□□□ -1.99
SCN1A-219ENST00000641575 KLRG1Q96E93 195 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 POM121Q96HA1 1249 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 IGSF21Q96ID5 467 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 ALG12Q9BV10 488 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 SLC6A17Q9H1V8 727 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 ZDHHC11Q9H8X9 412 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 SALL4Q9UJQ4 1053 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 RAP2CQ9Y3L5 183 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 CHD6Q8TD26 2715 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 LCTP09848 1927 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 WASH4PA8MWX3 477 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 M0R2Z0 102 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 HTRA2O43464 458 aaPredicted RBP2.61□□□□□ -1.99
SCN1A-219ENST00000641575 CDK2AP2O75956 126 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 HLA-HP01893 362 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 FAM163BP0C2L3 166 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 M6PRP20645 277 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 FECHP22830 423 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 MPSTP25325 297 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 IVDP26440 423 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 PRTGQ2VWP7 1150 aa2.61□□□□□ -1.99
SCN1A-219ENST00000641575 CLEC12AQ5QGZ9 265 aa2.61□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms