RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 SYS1Q8N2H4 156 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 LNX2Q8N448 690 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 ZNF614Q8N883 585 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 ABHD4Q8TB40 342 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 GPBAR1Q8TDU6 330 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 S100A16Q96FQ6 103 aaKnown RBP3.68□□□□□ -1.82
SCN1A-214ENST00000637038 STACQ99469 402 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 DHRS9Q9BPW9 319 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 SOSTQ9BQB4 213 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 CCDC3Q9BQI4 270 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 SRMSQ9H3Y6 488 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 GALNT9Q9HCQ5 603 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 HINT3Q9NQE9 182 aaKnown RBP3.68□□□□□ -1.82
SCN1A-214ENST00000637038 PLSCR3Q9NRY6 295 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 HCFC1R1Q9NWW0 138 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 SIDT1Q9NXL6 827 aaKnown RBP3.68□□□□□ -1.82
SCN1A-214ENST00000637038 KLHL9Q9P2J3 617 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 MRPS33Q9Y291 106 aaKnown RBP3.68□□□□□ -1.82
SCN1A-214ENST00000637038 RNF215Q9Y6U7 377 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 A0A0G2JMP0 313 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 A0A0X1KG70 313 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 A0A1W2PR48 441 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 C7orf66A4D0T2 115 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 IGLON5A6NGN9 336 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 I3L521 148 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 K7ESM1 405 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 SOCS6O14544 535 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 FABP7O15540 132 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 OR10H2O60403 315 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 NCR1O76036 304 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 TP53P04637 393 aaPredicted RBP3.68□□□□□ -1.82
SCN1A-214ENST00000637038 CFIP05156 583 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 S100A6P06703 90 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 RAB40ALP0C0E4 278 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 CISD3P0C7P0 127 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 OR2T7P0C7T2 308 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 PYCR1P32322 319 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 P2RY2P41231 377 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 TGM4P49221 684 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 ZNF81P51508 661 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 SNRPD2P62316 118 aaKnown RBP3.68□□□□□ -1.82
SCN1A-214ENST00000637038 HOXC5Q00444 222 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 ACY1Q03154 408 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 FZD5Q13467 585 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 ZNF234Q14588 700 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 FCN2Q15485 313 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 ZBTB37Q5TC79 503 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 SLC6A19Q695T7 634 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 MRM1Q6IN84 353 aaKnown RBP3.68□□□□□ -1.82
SCN1A-214ENST00000637038 IDO2Q6ZQW0 420 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 ZNF547Q8IVP9 402 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 ZNF440Q8IYI8 595 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 OR6V1Q8N148 313 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 ARIH2OSQ8N7S6 290 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 NLGN4YQ8NFZ3 816 aaPredicted RBP3.68□□□□□ -1.82
SCN1A-214ENST00000637038 OR2L3Q8NG85 312 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 OR4M2Q8NGB6 313 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 OR2T27Q8NH04 317 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 OR4Q3Q8NH05 313 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 FCAMRQ8WWV6 532 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 RAB40AQ8WXH6 277 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 ING5Q8WYH8 240 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 SMPDL3BQ92485 455 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 KAT2AQ92830 837 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 BPIFA2Q96DR5 249 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 C16orf58Q96GQ5 468 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 OR2M4Q96R27 311 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 INSM2Q96T92 566 aaPredicted RBP3.68□□□□□ -1.82
SCN1A-214ENST00000637038 KCNJ15Q99712 375 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 LGR4Q9BXB1 951 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 C12orf10Q9HB07 376 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 ADAP2Q9NPF8 381 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 ATP13A2Q9NQ11 1180 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 MED11Q9P086 117 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 UPB1Q9UBR1 384 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 ZNF69Q9UC07 566 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 PIAS3Q9Y6X2 628 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 COL5A1P20908 1838 aaPredicted RBP3.68□□□□□ -1.82
SCN1A-214ENST00000637038 ZSCAN5BA6NJL1 495 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 SLC9B1P1A6NJY1 282 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 A6NL46 340 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 HRO43593 1189 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 PLPP2O43688 288 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 ICMTO60725 284 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 NDUFB2O95178 105 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 TBX6O95947 436 aaPredicted RBP3.68□□□□□ -1.82
SCN1A-214ENST00000637038 RAF1P04049 648 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 SELLP14151 372 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 UGT2B7P16662 529 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 UQCRC1P31930 480 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 CBX5P45973 191 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 ARRB1P49407 418 aaPredicted RBP3.68□□□□□ -1.82
SCN1A-214ENST00000637038 GDI2P50395 445 aaKnown RBP3.68□□□□□ -1.82
SCN1A-214ENST00000637038 MMP15P51511 669 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 GAS1P54826 345 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 EFNB1P98172 346 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 KIR2DS3Q14952 304 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 P2RY14Q15391 338 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 OR1Q1Q15612 314 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 TRIM61Q5EBN2 209 aa3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms