RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 HAS3O00219 553 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 WWP2O00308 870 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 FCN1O00602 326 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 OR7A17O14581 309 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 ABCD4O14678 606 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 CCL16O15467 120 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 MAGEB4O15481 346 aaPredicted RBP0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 ADAM12O43184 909 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 B4GALT5O43286 388 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 EMC8O43402 210 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 PPIHO43447 177 aaKnown RBP0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 KINO60870 393 aaKnown RBP0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 TBL1XO60907 577 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 ZNF254O75437 659 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 GPX5O75715 221 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 CCNE2O96020 404 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 CHRNA1P02708 482 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 SLC4A1P02730 911 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 CXCL10P02778 98 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 SERPINF2P08697 491 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 ABHD2P08910 425 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 ANXA4P09525 319 aaPredicted RBP0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 GIG44P09565 113 aaPredicted RBP0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 OR8U8P0C7N1 319 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 UQCRFS1P1P0C7P4 283 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 SLC35G4P0C7Q5 338 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 P0C879 139 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 CT45A10P0DMU9 189 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 CALM1P0DP23 149 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 CALM2P0DP24 149 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 CALM3P0DP25 149 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 RALAP11233 206 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 MGMTP16455 207 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 HLA-DPA1P20036 260 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 CCNA2P20248 432 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 MX1P20591 662 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 VDAC1P21796 283 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 GABRR1P24046 479 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 OAS2P29728 719 aaKnown RBP0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 PRDX6P30041 224 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 NMT1P30419 496 aaKnown RBP0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 CASP3P42574 277 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 MAGEA4P43358 317 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 HTR5AP47898 357 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 ALDH3B2P48448 385 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 SLC11A1P49279 550 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 POU3F4P49335 361 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 CCL11P51671 97 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 SGSHP51688 502 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 SLC26A5P58743 744 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 MRPS6P82932 125 aaKnown RBP0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 MYBPC1Q00872 1141 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 PLOD1Q02809 727 aaPredicted RBP0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 KDSRQ06136 332 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 SPAG1Q07617 926 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 ACTN3Q08043 901 aaPredicted RBP0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 SIGLEC14Q08ET2 396 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 AP1B1Q10567 949 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 ITGB3BPQ13352 177 aaPredicted RBP0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 PPP2R5CQ13362 524 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 PLD1Q13393 1074 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 MSLNQ13421 630 aaPredicted RBP0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 TSTA3Q13630 321 aaPredicted RBP0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 KCNJ11Q14654 390 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 HERPUD1Q15011 391 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 UBE2V2Q15819 145 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 CAMK4Q16566 473 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 PARP6Q2NL67 630 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 KRTAP21-2Q3LI59 83 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 DCAF4L1Q3SXM0 396 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 AGKQ53H12 422 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 LDLRAP1Q5SW96 308 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 UTF1Q5T230 341 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 LGSNQ5TDP6 509 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 SDHAF4Q5VUM1 108 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 IL23RQ5VWK5 629 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 WSCD1Q658N2 575 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 OR8G2PQ6IF36 304 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 OR6B2Q6IFH4 312 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 RHBDD2Q6NTF9 364 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 ATRAIDQ6UW56 229 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 DLEU7Q6UYE1 221 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 TFAP2EQ6VUC0 442 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 TMEM26Q6ZUK4 368 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 LPCAT2Q7L5N7 544 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 LRRC70Q7Z2Q7 622 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 TRPM8Q7Z2W7 1104 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 MIER3Q7Z3K6 550 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 GOLGA7Q7Z5G4 137 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 HSD17B13Q7Z5P4 300 aaPredicted RBP0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 TAF8Q7Z7C8 310 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 ADAMTSL2Q86TH1 951 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 YRDCQ86U90 279 aaKnown RBP0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 TGIF2LYQ8IUE0 185 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 ERI1Q8IV48 349 aaKnown RBP0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 GPR65Q8IYL9 337 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 CEND1Q8N111 149 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 RNF175Q8N4F7 328 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 DEFB119Q8N690 84 aa0.78□□□□□ -2.28
SMARCB1-209ENST00000635578 ALLCQ8N6M5 410 aa0.78□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms