RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 INTS12Q96CB8 462 aaKnown RBP18.18■□□□□ 0.5
PTCD3-220ENST00000627371 ARL5BQ96KC2 179 aa18.18■□□□□ 0.5
PTCD3-220ENST00000627371 MCHR1Q99705 422 aa18.18■□□□□ 0.5
PTCD3-220ENST00000627371 PRRG4Q9BZD6 226 aa18.18■□□□□ 0.5
PTCD3-220ENST00000627371 PCDHAC1Q9H158 963 aa18.18■□□□□ 0.5
PTCD3-220ENST00000627371 C1orf21Q9H246 121 aa18.18■□□□□ 0.5
PTCD3-220ENST00000627371 ADPRHL2Q9NX46 363 aa18.18■□□□□ 0.5
PTCD3-220ENST00000627371 ZNF629Q9UEG4 869 aaPredicted RBP18.18■□□□□ 0.5
PTCD3-220ENST00000627371 SH3GLB1Q9Y371 365 aa18.18■□□□□ 0.5
PTCD3-220ENST00000627371 A0A0B4J2E0 115 aa18.17■□□□□ 0.5
PTCD3-220ENST00000627371 A0A1B0GX12 115 aa18.17■□□□□ 0.5
PTCD3-220ENST00000627371 ZC3H12DA2A288 527 aaKnown RBP18.17■□□□□ 0.5
PTCD3-220ENST00000627371 PMS2P2O95744 297 aa18.17■□□□□ 0.5
PTCD3-220ENST00000627371 CLDN1O95832 211 aa18.17■□□□□ 0.5
PTCD3-220ENST00000627371 IL18BPO95998 194 aa18.17■□□□□ 0.5
PTCD3-220ENST00000627371 NCK1P16333 377 aa18.17■□□□□ 0.5
PTCD3-220ENST00000627371 CSNK2A1P68400 391 aaPredicted RBP18.17■□□□□ 0.5
PTCD3-220ENST00000627371 ALG10BQ5I7T1 473 aa18.17■□□□□ 0.5
PTCD3-220ENST00000627371 ZNF613Q6PF04 617 aa18.17■□□□□ 0.5
PTCD3-220ENST00000627371 ULK3Q6PHR2 472 aa18.17■□□□□ 0.5
PTCD3-220ENST00000627371 CBLL1Q75N03 491 aa18.17■□□□□ 0.5
PTCD3-220ENST00000627371 LSRQ86X29 649 aaPredicted RBP18.17■□□□□ 0.5
PTCD3-220ENST00000627371 RBM45Q8IUH3 476 aaKnown RBP18.17■□□□□ 0.5
PTCD3-220ENST00000627371 LIX1LQ8IVB5 337 aa18.17■□□□□ 0.5
PTCD3-220ENST00000627371 GCNT2Q8N0V5 402 aa18.17■□□□□ 0.5
PTCD3-220ENST00000627371 LZICQ8WZA0 190 aa18.17■□□□□ 0.5
PTCD3-220ENST00000627371 FAM162AQ96A26 154 aa18.17■□□□□ 0.5
PTCD3-220ENST00000627371 TPD52L3Q96J77 140 aa18.17■□□□□ 0.5
PTCD3-220ENST00000627371 SFXN3Q9BWM7 321 aa18.17■□□□□ 0.5
PTCD3-220ENST00000627371 A1L4Q6 167 aa18.16■□□□□ 0.5
PTCD3-220ENST00000627371 ELOA3DA6NLF2 546 aaPredicted RBP18.16■□□□□ 0.5
PTCD3-220ENST00000627371 FAM90A27PA6NNH2 459 aa18.16■□□□□ 0.5
PTCD3-220ENST00000627371 A8MVM7 634 aa18.16■□□□□ 0.5
PTCD3-220ENST00000627371 SULT2B1O00204 365 aa18.16■□□□□ 0.5
PTCD3-220ENST00000627371 DVL2O14641 736 aa18.16■□□□□ 0.5
PTCD3-220ENST00000627371 DNPH1O43598 174 aa18.16■□□□□ 0.5
PTCD3-220ENST00000627371 SERPINA1P01009 418 aa18.16■□□□□ 0.5
PTCD3-220ENST00000627371 CRHP06850 196 aa18.16■□□□□ 0.5
PTCD3-220ENST00000627371 PNMTP11086 282 aa18.16■□□□□ 0.5
PTCD3-220ENST00000627371 TCN1P20061 433 aaPredicted RBP18.16■□□□□ 0.5
PTCD3-220ENST00000627371 TNFRSF1BP20333 461 aa18.16■□□□□ 0.5
PTCD3-220ENST00000627371 OPRM1P35372 400 aa18.16■□□□□ 0.5
PTCD3-220ENST00000627371 FOXF2Q12947 444 aa18.16■□□□□ 0.5
PTCD3-220ENST00000627371 BNIP2Q12982 314 aa18.16■□□□□ 0.5
PTCD3-220ENST00000627371 SLC25A35Q3KQZ1 300 aa18.16■□□□□ 0.5
PTCD3-220ENST00000627371 ELOA3BQ3SY89 546 aa18.16■□□□□ 0.5
PTCD3-220ENST00000627371 ENTPD8Q5MY95 495 aa18.16■□□□□ 0.5
PTCD3-220ENST00000627371 SWT1Q5T5J6 900 aaKnown RBP18.16■□□□□ 0.5
PTCD3-220ENST00000627371 GLYATQ6IB77 296 aa18.16■□□□□ 0.5
PTCD3-220ENST00000627371 ARHGAP24Q8N264 748 aa18.16■□□□□ 0.5
PTCD3-220ENST00000627371 ELOA3Q8NG57 546 aa18.16■□□□□ 0.5
PTCD3-220ENST00000627371 RNF128Q8TEB7 428 aa18.16■□□□□ 0.5
PTCD3-220ENST00000627371 SLC38A4Q969I6 547 aa18.16■□□□□ 0.5
PTCD3-220ENST00000627371 SLC47A1Q96FL8 570 aa18.16■□□□□ 0.5
PTCD3-220ENST00000627371 POTEKPQ9BYX7 375 aa18.16■□□□□ 0.5
PTCD3-220ENST00000627371 SELENONQ9NZV5 590 aa18.16■□□□□ 0.5
PTCD3-220ENST00000627371 MAGEL2Q9UJ55 1249 aa18.16■□□□□ 0.5
PTCD3-220ENST00000627371 TRAPPC4Q9Y296 219 aa18.16■□□□□ 0.5
PTCD3-220ENST00000627371 KLF2Q9Y5W3 355 aaPredicted RBP18.16■□□□□ 0.5
PTCD3-220ENST00000627371 UTP20O75691 2785 aaKnown RBP18.16■□□□□ 0.5
PTCD3-220ENST00000627371 CPSF4LA6NMK7 179 aaKnown RBP18.15■□□□□ 0.5
PTCD3-220ENST00000627371 NPIPB7O75200 414 aa18.15■□□□□ 0.5
PTCD3-220ENST00000627371 GMNNO75496 209 aa18.15■□□□□ 0.5
PTCD3-220ENST00000627371 BMP5P22003 454 aa18.15■□□□□ 0.5
PTCD3-220ENST00000627371 CEACAM7Q14002 265 aa18.15■□□□□ 0.5
PTCD3-220ENST00000627371 GUSBP1Q15486 140 aa18.15■□□□□ 0.5
PTCD3-220ENST00000627371 EEF1A1P5Q5VTE0 462 aa18.15■□□□□ 0.5
PTCD3-220ENST00000627371 FCRLAQ7L513 359 aa18.15■□□□□ 0.5
PTCD3-220ENST00000627371 MAMDC2Q7Z304 686 aaPredicted RBP18.15■□□□□ 0.5
PTCD3-220ENST00000627371 RELL2Q8NC24 303 aaPredicted RBP18.15■□□□□ 0.5
PTCD3-220ENST00000627371 STK35Q8TDR2 534 aa18.15■□□□□ 0.5
PTCD3-220ENST00000627371 ROBO4Q8WZ75 1007 aa18.15■□□□□ 0.5
PTCD3-220ENST00000627371 DNAJA3Q96EY1 480 aa18.15■□□□□ 0.5
PTCD3-220ENST00000627371 GORASP2Q9H8Y8 452 aa18.15■□□□□ 0.5
PTCD3-220ENST00000627371 TAS2R1Q9NYW7 299 aa18.15■□□□□ 0.5
PTCD3-220ENST00000627371 RPS6KA6Q9UK32 745 aa18.15■□□□□ 0.5
PTCD3-220ENST00000627371 A0A087WUJ7 227 aa18.14■□□□□ 0.49
PTCD3-220ENST00000627371 A0A1W2PNV4 684 aa18.14■□□□□ 0.49
PTCD3-220ENST00000627371 SMAD9O15198 467 aaKnown RBP18.14■□□□□ 0.49
PTCD3-220ENST00000627371 TNFSF13O75888 250 aa18.14■□□□□ 0.49
PTCD3-220ENST00000627371 ZNF682O95780 498 aa18.14■□□□□ 0.49
PTCD3-220ENST00000627371 IMPDH2P12268 514 aa18.14■□□□□ 0.49
PTCD3-220ENST00000627371 ENPP1P22413 925 aa18.14■□□□□ 0.49
PTCD3-220ENST00000627371 IDUAP35475 653 aa18.14■□□□□ 0.49
PTCD3-220ENST00000627371 OR1E2P47887 323 aa18.14■□□□□ 0.49
PTCD3-220ENST00000627371 CDH12P55289 794 aa18.14■□□□□ 0.49
PTCD3-220ENST00000627371 RNPS1Q15287 305 aaKnown RBP18.14■□□□□ 0.49
PTCD3-220ENST00000627371 GTF2IRD2BQ6EKJ0 949 aa18.14■□□□□ 0.49
PTCD3-220ENST00000627371 VTCN1Q7Z7D3 282 aa18.14■□□□□ 0.49
PTCD3-220ENST00000627371 GTF2IRD2Q86UP8 949 aa18.14■□□□□ 0.49
PTCD3-220ENST00000627371 TSPYL5Q86VY4 417 aaPredicted RBP18.14■□□□□ 0.49
PTCD3-220ENST00000627371 ADAMTS16Q8TE57 1224 aa18.14■□□□□ 0.49
PTCD3-220ENST00000627371 ZHX1-C8orf76Q96EF9 292 aa18.14■□□□□ 0.49
PTCD3-220ENST00000627371 GMPPAQ96IJ6 420 aaPredicted RBP18.14■□□□□ 0.49
PTCD3-220ENST00000627371 UCK2Q9BZX2 261 aa18.14■□□□□ 0.49
PTCD3-220ENST00000627371 POLR2J2Q9GZM3 115 aaKnown RBP18.14■□□□□ 0.49
PTCD3-220ENST00000627371 POLR2J3Q9H1A7 115 aaKnown RBP18.14■□□□□ 0.49
PTCD3-220ENST00000627371 GLRX2Q9NS18 164 aa18.14■□□□□ 0.49
PTCD3-220ENST00000627371 PRPF19Q9UMS4 504 aaKnown RBP18.14■□□□□ 0.49
PTCD3-220ENST00000627371 SNX13Q9Y5W8 968 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms