RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 CARD18P57730 90 aa12.05□□□□□ -0.48
LINC00540-202ENST00000616974 OR1Q1Q15612 314 aa12.05□□□□□ -0.48
LINC00540-202ENST00000616974 CYBRD1Q53TN4 286 aa12.05□□□□□ -0.48
LINC00540-202ENST00000616974 MAMDC2Q7Z304 686 aaPredicted RBP12.05□□□□□ -0.48
LINC00540-202ENST00000616974 CNEP1R1Q8N9A8 125 aa12.05□□□□□ -0.48
LINC00540-202ENST00000616974 LILRB4Q8NHJ6 448 aa12.05□□□□□ -0.48
LINC00540-202ENST00000616974 OIT3Q8WWZ8 545 aa12.05□□□□□ -0.48
LINC00540-202ENST00000616974 KTI12Q96EK9 354 aaPredicted RBP12.05□□□□□ -0.48
LINC00540-202ENST00000616974 OPN3Q9H1Y3 402 aaPredicted RBP12.05□□□□□ -0.48
LINC00540-202ENST00000616974 CREBBPQ92793 2442 aa12.04□□□□□ -0.48
LINC00540-202ENST00000616974 A0A1W2PNV4 684 aa12.04□□□□□ -0.48
LINC00540-202ENST00000616974 B2RBV5 119 aa12.04□□□□□ -0.48
LINC00540-202ENST00000616974 J3KTA2 159 aa12.04□□□□□ -0.48
LINC00540-202ENST00000616974 CXCR6O00574 342 aa12.04□□□□□ -0.48
LINC00540-202ENST00000616974 SERPINB7O75635 380 aa12.04□□□□□ -0.48
LINC00540-202ENST00000616974 RCBTB2O95199 551 aa12.04□□□□□ -0.48
LINC00540-202ENST00000616974 LYPD3O95274 346 aa12.04□□□□□ -0.48
LINC00540-202ENST00000616974 CBLP22681 906 aa12.04□□□□□ -0.48
LINC00540-202ENST00000616974 SLC7A1P30825 629 aa12.04□□□□□ -0.48
LINC00540-202ENST00000616974 GUSBP1Q15486 140 aa12.04□□□□□ -0.48
LINC00540-202ENST00000616974 RIPPLY2Q5TAB7 128 aa12.04□□□□□ -0.48
LINC00540-202ENST00000616974 WBP2NLQ6ICG8 309 aa12.04□□□□□ -0.48
LINC00540-202ENST00000616974 BTLAQ7Z6A9 289 aa12.04□□□□□ -0.48
LINC00540-202ENST00000616974 TSEN54Q7Z6J9 526 aaKnown RBP12.04□□□□□ -0.48
LINC00540-202ENST00000616974 TMEM234Q8WY98 164 aa12.04□□□□□ -0.48
LINC00540-202ENST00000616974 WNT2BQ93097 391 aa12.04□□□□□ -0.48
LINC00540-202ENST00000616974 STARD4Q96DR4 205 aa12.04□□□□□ -0.48
LINC00540-202ENST00000616974 TPD52L3Q96J77 140 aa12.04□□□□□ -0.48
LINC00540-202ENST00000616974 ZNF300Q96RE9 604 aaPredicted RBP12.04□□□□□ -0.48
LINC00540-202ENST00000616974 SH3GL1Q99961 368 aa12.04□□□□□ -0.48
LINC00540-202ENST00000616974 HOPXQ9BPY8 73 aaPredicted RBP12.04□□□□□ -0.48
LINC00540-202ENST00000616974 KCTD14Q9BQ13 255 aaPredicted RBP12.04□□□□□ -0.48
LINC00540-202ENST00000616974 SPAG4Q9NPE6 437 aa12.04□□□□□ -0.48
LINC00540-202ENST00000616974 FAAHO00519 579 aa12.04□□□□□ -0.48
LINC00540-202ENST00000616974 APOBEC1P41238 236 aaKnown RBP12.04□□□□□ -0.48
LINC00540-202ENST00000616974 POLR2HP52434 150 aaKnown RBP12.04□□□□□ -0.48
LINC00540-202ENST00000616974 SMSP52788 366 aa12.04□□□□□ -0.48
LINC00540-202ENST00000616974 CDH12P55289 794 aa12.04□□□□□ -0.48
LINC00540-202ENST00000616974 VEZF1Q14119 521 aa12.04□□□□□ -0.48
LINC00540-202ENST00000616974 KRT72Q14CN4 511 aa12.04□□□□□ -0.48
LINC00540-202ENST00000616974 TMEM211Q6ICI0 200 aa12.04□□□□□ -0.48
LINC00540-202ENST00000616974 XKRXQ6PP77 449 aa12.04□□□□□ -0.48
LINC00540-202ENST00000616974 C22orf34Q6ZV56 151 aa12.04□□□□□ -0.48
LINC00540-202ENST00000616974 CHMP1BQ7LBR1 199 aa12.04□□□□□ -0.48
LINC00540-202ENST00000616974 P4HA3Q7Z4N8 544 aa12.04□□□□□ -0.48
LINC00540-202ENST00000616974 OR52E4Q8NGH9 312 aa12.04□□□□□ -0.48
LINC00540-202ENST00000616974 RNF217Q8TC41 542 aa12.04□□□□□ -0.48
LINC00540-202ENST00000616974 PTDSS2Q9BVG9 487 aa12.04□□□□□ -0.48
LINC00540-202ENST00000616974 COQ3Q9NZJ6 369 aa12.04□□□□□ -0.48
LINC00540-202ENST00000616974 CD300AQ9UGN4 299 aa12.04□□□□□ -0.48
LINC00540-202ENST00000616974 A0A0B4J2E0 115 aa12.03□□□□□ -0.48
LINC00540-202ENST00000616974 A0A1B0GX12 115 aa12.03□□□□□ -0.48
LINC00540-202ENST00000616974 EEF1E1-BLOC1S5C9J1V9 151 aa12.03□□□□□ -0.48
LINC00540-202ENST00000616974 LINC01387J3KSC0 135 aa12.03□□□□□ -0.48
LINC00540-202ENST00000616974 EEF1E1O43324 174 aaKnown RBP12.03□□□□□ -0.48
LINC00540-202ENST00000616974 PDE5AO76074 875 aa12.03□□□□□ -0.48
LINC00540-202ENST00000616974 PRF1P14222 555 aa12.03□□□□□ -0.48
LINC00540-202ENST00000616974 PTGER4P35408 488 aa12.03□□□□□ -0.48
LINC00540-202ENST00000616974 ENTPD8Q5MY95 495 aa12.03□□□□□ -0.48
LINC00540-202ENST00000616974 TMPPEQ6ZT21 453 aa12.03□□□□□ -0.48
LINC00540-202ENST00000616974 TRPM8Q7Z2W7 1104 aa12.03□□□□□ -0.48
LINC00540-202ENST00000616974 ZNF550Q7Z398 422 aa12.03□□□□□ -0.48
LINC00540-202ENST00000616974 NUFIP2Q7Z417 695 aaKnown RBP12.03□□□□□ -0.48
LINC00540-202ENST00000616974 PATL1Q86TB9 770 aaKnown RBP12.03□□□□□ -0.48
LINC00540-202ENST00000616974 CARM1Q86X55 608 aa12.03□□□□□ -0.48
LINC00540-202ENST00000616974 TUSC5Q8IXB3 177 aa12.03□□□□□ -0.48
LINC00540-202ENST00000616974 KDM8Q8N371 416 aa12.03□□□□□ -0.48
LINC00540-202ENST00000616974 SLC26A7Q8TE54 656 aa12.03□□□□□ -0.48
LINC00540-202ENST00000616974 ADAMTS16Q8TE57 1224 aa12.03□□□□□ -0.48
LINC00540-202ENST00000616974 RNF128Q8TEB7 428 aa12.03□□□□□ -0.48
LINC00540-202ENST00000616974 NSL1Q96IY1 281 aa12.03□□□□□ -0.48
LINC00540-202ENST00000616974 MCHR1Q99705 422 aa12.03□□□□□ -0.48
LINC00540-202ENST00000616974 SPATA5L1Q9BVQ7 753 aa12.03□□□□□ -0.48
LINC00540-202ENST00000616974 C12orf49Q9H741 205 aa12.03□□□□□ -0.48
LINC00540-202ENST00000616974 ADPRHL2Q9NX46 363 aa12.03□□□□□ -0.48
LINC00540-202ENST00000616974 RHCGQ9UBD6 479 aa12.03□□□□□ -0.48
LINC00540-202ENST00000616974 SULT2B1O00204 365 aa12.02□□□□□ -0.48
LINC00540-202ENST00000616974 NPIPB7O75200 414 aa12.02□□□□□ -0.48
LINC00540-202ENST00000616974 ZNF682O95780 498 aa12.02□□□□□ -0.48
LINC00540-202ENST00000616974 SERPINA1P01009 418 aa12.02□□□□□ -0.48
LINC00540-202ENST00000616974 FPR1P21462 350 aa12.02□□□□□ -0.48
LINC00540-202ENST00000616974 RPS5P46782 204 aaKnown RBP12.02□□□□□ -0.48
LINC00540-202ENST00000616974 COPZ1P61923 177 aa12.02□□□□□ -0.48
LINC00540-202ENST00000616974 MXRA7P84157 204 aa12.02□□□□□ -0.48
LINC00540-202ENST00000616974 LTBQ06643 244 aa12.02□□□□□ -0.48
LINC00540-202ENST00000616974 PIN1Q13526 163 aaPredicted RBP12.02□□□□□ -0.48
LINC00540-202ENST00000616974 ALG10BQ5I7T1 473 aa12.02□□□□□ -0.48
LINC00540-202ENST00000616974 DEF8Q6ZN54 512 aa12.02□□□□□ -0.48
LINC00540-202ENST00000616974 FCRLAQ7L513 359 aa12.02□□□□□ -0.48
LINC00540-202ENST00000616974 MEX3DQ86XN8 651 aaKnown RBP12.02□□□□□ -0.48
LINC00540-202ENST00000616974 WDFY1Q8IWB7 410 aa12.02□□□□□ -0.48
LINC00540-202ENST00000616974 PGAM4Q8N0Y7 254 aa12.02□□□□□ -0.48
LINC00540-202ENST00000616974 LSMEM1Q8N8F7 131 aa12.02□□□□□ -0.48
LINC00540-202ENST00000616974 HEATR1Q9H583 2144 aaKnown RBP12.02□□□□□ -0.48
LINC00540-202ENST00000616974 TAS2R1Q9NYW7 299 aa12.02□□□□□ -0.48
LINC00540-202ENST00000616974 SMNDC1O75940 238 aaKnown RBP eCLIP12.02□□□□□ -0.49
LINC00540-202ENST00000616974 AKR7A3O95154 331 aa12.02□□□□□ -0.49
LINC00540-202ENST00000616974 HOXD4P09016 255 aaPredicted RBP12.02□□□□□ -0.49
LINC00540-202ENST00000616974 GGT1P19440 569 aa12.02□□□□□ -0.49
LINC00540-202ENST00000616974 CXCR1P25024 350 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms