RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 A0A087WZY1 265 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 A0A1B0GUV1 79 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 A0A1W2PP18 115 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 FAM230AA0A1W2PPH8 454 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 SLC5A10A0PJK1 596 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 XKRY2A2RUG3 117 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 DPPA5A6NC42 116 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 ARHGEF33A8MVX0 844 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 C3orf84H3BNL1 204 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 ZNF354AO60765 605 aaPredicted RBP3.78□□□□□ -1.8
LINC00540-201ENST00000611481 SCGB2A1O75556 95 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 GLCEO94923 617 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 NUDT17P0C025 328 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 DANCRP0C864 163 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 ETFAP13804 333 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 SLC6A6P31641 620 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 DIO3P55073 304 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 MAT1AQ00266 395 aaKnown RBP3.78□□□□□ -1.8
LINC00540-201ENST00000611481 GABPB1Q06547 395 aaPredicted RBP3.78□□□□□ -1.8
LINC00540-201ENST00000611481 ENPEPQ07075 957 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 CRYZQ08257 329 aaKnown RBP3.78□□□□□ -1.8
LINC00540-201ENST00000611481 PPP1R7Q15435 360 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 PNLIPRP3Q17RR3 467 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 ANXA2RQ3ZCQ2 193 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 SFT2D3Q587I9 215 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 HSP90B2PQ58FF3 399 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 NSUN5P2Q63ZY6 315 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 WDR88Q6ZMY6 472 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 ANKRD37Q7Z713 158 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 PIGWQ7Z7B1 504 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 ADAMTSL2Q86TH1 951 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 GPSM1Q86YR5 675 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 SVOPLQ8N434 492 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 PAQR4Q8N4S7 273 aaPredicted RBP3.78□□□□□ -1.8
LINC00540-201ENST00000611481 TMEM217Q8N7C4 229 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 RASGEF1AQ8N9B8 481 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 OR52N4Q8NGI2 321 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 FLVCR1-AS1Q8TAF5 88 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 C10orf105Q8TEF2 133 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 NAT14Q8WUY8 206 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 RIT1Q92963 219 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 SNAPC3Q92966 411 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 MUS81Q96NY9 551 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 ZNF347Q96SE7 839 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 CYTH2Q99418 400 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 LPAR4Q99677 370 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 LLPHQ9BRT6 129 aaKnown RBP3.78□□□□□ -1.8
LINC00540-201ENST00000611481 TUBGCP2Q9BSJ2 902 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 CNPY3Q9BT09 278 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 SFXN3Q9BWM7 321 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 VN1R1Q9GZP7 353 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 DDX47Q9H0S4 455 aaKnown RBP3.78□□□□□ -1.8
LINC00540-201ENST00000611481 WNT5BQ9H1J7 359 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 IL1RL2Q9HB29 575 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 ERVK-11Q9UQG0 969 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 COQ4Q9Y3A0 265 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 ABCA13Q86UQ4 5058 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 PLCE1Q9P212 2302 aa3.78□□□□□ -1.8
LINC00540-201ENST00000611481 KIAA1109Q2LD37 5005 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 C15orf38-AP3S2A0A0A6YYH1 394 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 MGAT4DA6NG13 374 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 EPHB6O15197 1021 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 CLOCKO15516 846 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 FCGR3BO75015 233 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 PDE5AO76074 875 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 LCATP04180 440 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 ANXA5P08758 320 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 SBK2P0C263 348 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 SPP1P10451 314 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 PTNP21246 168 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 PTPN6P29350 595 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 SHMT2P34897 504 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 UGT2B10P36537 528 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 HSPA9P38646 679 aaKnown RBP3.77□□□□□ -1.81
LINC00540-201ENST00000611481 CD79BP40259 229 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 ERVFC1-1P60608 527 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 UBA52P62987 128 aaKnown RBP3.77□□□□□ -1.81
LINC00540-201ENST00000611481 GALK2Q01415 458 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 SPIBQ01892 262 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 IL10RBQ08334 325 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 SPOCK1Q08629 439 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 IL24Q13007 206 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 ITGADQ13349 1161 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 CFAP157Q5JU67 520 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 ASPHD1Q5U4P2 390 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 LRRC38Q5VT99 294 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 KCTD11Q693B1 232 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 PDPK2PQ6A1A2 396 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 LINGO2Q7L985 606 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 TAS2R42Q7RTR8 314 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 NOXA1Q86UR1 476 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 IGFN1Q86VF2 1251 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 ZNF573Q86YE8 665 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 ZDHHC23Q8IYP9 409 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 EMC1Q8N766 993 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 PRR26Q8N8Z3 221 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 ZDHHC22Q8N966 263 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 C7orf57Q8NEG2 295 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 TMEM185AQ8NFB2 350 aa3.77□□□□□ -1.81
LINC00540-201ENST00000611481 GJC3Q8NFK1 279 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms