RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 MBOAT2Q6ZWT7 520 aa12.93□□□□□ -0.34
UPF1-211ENST00000600868 GHDCQ8N2G8 530 aa12.93□□□□□ -0.34
UPF1-211ENST00000600868 LINC00471Q8N535 108 aa12.93□□□□□ -0.34
UPF1-211ENST00000600868 OR5K1Q8NHB7 308 aa12.93□□□□□ -0.34
UPF1-211ENST00000600868 KLHL4Q9C0H6 718 aa12.93□□□□□ -0.34
UPF1-211ENST00000600868 MEPEQ9NQ76 525 aaPredicted RBP12.93□□□□□ -0.34
UPF1-211ENST00000600868 STX18Q9P2W9 335 aaKnown RBP12.93□□□□□ -0.34
UPF1-211ENST00000600868 SPRR3Q9UBC9 169 aa12.93□□□□□ -0.34
UPF1-211ENST00000600868 HDGFL3Q9Y3E1 203 aa12.93□□□□□ -0.34
UPF1-211ENST00000600868 U3KQV3 271 aa12.93□□□□□ -0.34
UPF1-211ENST00000600868 TRAV36DV7A0A075B6V5 113 aa12.92□□□□□ -0.34
UPF1-211ENST00000600868 ZC3H12DA2A288 527 aaKnown RBP12.92□□□□□ -0.34
UPF1-211ENST00000600868 OR14I1A6ND48 311 aa12.92□□□□□ -0.34
UPF1-211ENST00000600868 ARRDC5A6NEK1 342 aa12.92□□□□□ -0.34
UPF1-211ENST00000600868 TFPIP10646 304 aa12.92□□□□□ -0.34
UPF1-211ENST00000600868 SHC1P29353 583 aa12.92□□□□□ -0.34
UPF1-211ENST00000600868 SFTPDP35247 375 aa12.92□□□□□ -0.34
UPF1-211ENST00000600868 ATRXP46100 2492 aa12.92□□□□□ -0.34
UPF1-211ENST00000600868 STARP49675 285 aa12.92□□□□□ -0.34
UPF1-211ENST00000600868 ARHGDIAP52565 204 aa12.92□□□□□ -0.34
UPF1-211ENST00000600868 IST1P53990 364 aa12.92□□□□□ -0.34
UPF1-211ENST00000600868 CLDN18P56856 261 aa12.92□□□□□ -0.34
UPF1-211ENST00000600868 PRKCDQ05655 676 aa12.92□□□□□ -0.34
UPF1-211ENST00000600868 CRYZQ08257 329 aaKnown RBP12.92□□□□□ -0.34
UPF1-211ENST00000600868 NFATC3Q12968 1075 aa12.92□□□□□ -0.34
UPF1-211ENST00000600868 PPP1R8Q12972 351 aaKnown RBP12.92□□□□□ -0.34
UPF1-211ENST00000600868 MICAQ29983 383 aa12.92□□□□□ -0.34
UPF1-211ENST00000600868 PRR30Q53SZ7 412 aaPredicted RBP12.92□□□□□ -0.34
UPF1-211ENST00000600868 C1orf140Q5VVS0 124 aa12.92□□□□□ -0.34
UPF1-211ENST00000600868 SHQ1Q6PI26 577 aaKnown RBP12.92□□□□□ -0.34
UPF1-211ENST00000600868 TBPL2Q6SJ96 375 aa12.92□□□□□ -0.34
UPF1-211ENST00000600868 ESPNLQ6ZVH7 1005 aa12.92□□□□□ -0.34
UPF1-211ENST00000600868 RRM2BQ7LG56 351 aa12.92□□□□□ -0.34
UPF1-211ENST00000600868 TMEM179BQ7Z7N9 219 aa12.92□□□□□ -0.34
UPF1-211ENST00000600868 GGNQ86UU5 652 aa12.92□□□□□ -0.34
UPF1-211ENST00000600868 SVOPLQ8N434 492 aa12.92□□□□□ -0.34
UPF1-211ENST00000600868 ATP6V1C2Q8NEY4 427 aa12.92□□□□□ -0.34
UPF1-211ENST00000600868 OR4K5Q8NGD3 323 aa12.92□□□□□ -0.34
UPF1-211ENST00000600868 OR6S1Q8NH40 331 aa12.92□□□□□ -0.34
UPF1-211ENST00000600868 SARAFQ96BY9 339 aa12.92□□□□□ -0.34
UPF1-211ENST00000600868 KLHL15Q96M94 604 aa12.92□□□□□ -0.34
UPF1-211ENST00000600868 TIMP4Q99727 224 aa12.92□□□□□ -0.34
UPF1-211ENST00000600868 PSD2Q9BQI7 771 aa12.92□□□□□ -0.34
UPF1-211ENST00000600868 OR11A1Q9GZK7 315 aa12.92□□□□□ -0.34
UPF1-211ENST00000600868 SEMA6AQ9H2E6 1030 aa12.92□□□□□ -0.34
UPF1-211ENST00000600868 TMEM185BQ9H7F4 350 aa12.92□□□□□ -0.34
UPF1-211ENST00000600868 ASF1BQ9NVP2 202 aa12.92□□□□□ -0.34
UPF1-211ENST00000600868 ZNF407Q9C0G0 2248 aa12.92□□□□□ -0.34
UPF1-211ENST00000600868 BSNQ9UPA5 3926 aa12.92□□□□□ -0.34
UPF1-211ENST00000600868 A0A0J9YW62 118 aa12.91□□□□□ -0.34
UPF1-211ENST00000600868 OR2T1O43869 369 aa12.91□□□□□ -0.34
UPF1-211ENST00000600868 CCNB2O95067 398 aa12.91□□□□□ -0.34
UPF1-211ENST00000600868 AHSA1O95433 338 aa12.91□□□□□ -0.34
UPF1-211ENST00000600868 CPN1P15169 458 aa12.91□□□□□ -0.34
UPF1-211ENST00000600868 ZNF708P17019 499 aa12.91□□□□□ -0.34
UPF1-211ENST00000600868 IFNGR2P38484 337 aa12.91□□□□□ -0.34
UPF1-211ENST00000600868 CTBP2P56545 445 aa12.91□□□□□ -0.34
UPF1-211ENST00000600868 CLDN20P56880 219 aa12.91□□□□□ -0.34
UPF1-211ENST00000600868 MYBPHQ13203 477 aa12.91□□□□□ -0.34
UPF1-211ENST00000600868 C1QL3Q5VWW1 255 aa12.91□□□□□ -0.34
UPF1-211ENST00000600868 ZNF770Q6IQ21 691 aaPredicted RBP12.91□□□□□ -0.34
UPF1-211ENST00000600868 HIPK1Q86Z02 1210 aa12.91□□□□□ -0.34
UPF1-211ENST00000600868 P3H2Q8IVL5 708 aa12.91□□□□□ -0.34
UPF1-211ENST00000600868 NRMQ8IXM6 262 aa12.91□□□□□ -0.34
UPF1-211ENST00000600868 PFN4Q8NHR9 129 aa12.91□□□□□ -0.34
UPF1-211ENST00000600868 PIGXQ8TBF5 258 aa12.91□□□□□ -0.34
UPF1-211ENST00000600868 GIPC3Q8TF64 312 aa12.91□□□□□ -0.34
UPF1-211ENST00000600868 SMPDL3BQ92485 455 aa12.91□□□□□ -0.34
UPF1-211ENST00000600868 KTI12Q96EK9 354 aaPredicted RBP12.91□□□□□ -0.34
UPF1-211ENST00000600868 ADGRG7Q96K78 797 aa12.91□□□□□ -0.34
UPF1-211ENST00000600868 ARL5BQ96KC2 179 aa12.91□□□□□ -0.34
UPF1-211ENST00000600868 OR5B2Q96R09 309 aa12.91□□□□□ -0.34
UPF1-211ENST00000600868 PTDSS2Q9BVG9 487 aa12.91□□□□□ -0.34
UPF1-211ENST00000600868 RNPEPL1Q9HAU8 725 aa12.91□□□□□ -0.34
UPF1-211ENST00000600868 KRCC1Q9NPI7 259 aaPredicted RBP12.91□□□□□ -0.34
UPF1-211ENST00000600868 TRAPPC4Q9Y296 219 aa12.91□□□□□ -0.34
UPF1-211ENST00000600868 TMEM5Q9Y2B1 443 aa12.91□□□□□ -0.34
UPF1-211ENST00000600868 DNAJC13O75165 2243 aa12.9□□□□□ -0.34
UPF1-211ENST00000600868 MED12Q93074 2177 aa12.9□□□□□ -0.34
UPF1-211ENST00000600868 IGSF10Q6WRI0 2623 aa12.9□□□□□ -0.34
UPF1-211ENST00000600868 A0A1B0GTH9 108 aa12.9□□□□□ -0.34
UPF1-211ENST00000600868 G3V2T6 193 aa12.9□□□□□ -0.34
UPF1-211ENST00000600868 KPNA4O00629 521 aaPredicted RBP12.9□□□□□ -0.34
UPF1-211ENST00000600868 PIP5K1CO60331 668 aa12.9□□□□□ -0.34
UPF1-211ENST00000600868 OR10H3O60404 316 aa12.9□□□□□ -0.34
UPF1-211ENST00000600868 FZD7O75084 574 aa12.9□□□□□ -0.34
UPF1-211ENST00000600868 PMS2P2O95744 297 aa12.9□□□□□ -0.34
UPF1-211ENST00000600868 MT-ATP6P00846 226 aa12.9□□□□□ -0.34
UPF1-211ENST00000600868 OPN1LWP04000 364 aa12.9□□□□□ -0.34
UPF1-211ENST00000600868 ZNF23P17027 643 aa12.9□□□□□ -0.34
UPF1-211ENST00000600868 PTNP21246 168 aa12.9□□□□□ -0.34
UPF1-211ENST00000600868 IDUAP35475 653 aa12.9□□□□□ -0.34
UPF1-211ENST00000600868 OMPP47874 163 aa12.9□□□□□ -0.34
UPF1-211ENST00000600868 SUCLG1P53597 346 aaKnown RBP12.9□□□□□ -0.34
UPF1-211ENST00000600868 CLDN15P56746 228 aa12.9□□□□□ -0.34
UPF1-211ENST00000600868 LSM11P83369 360 aaKnown RBP eCLIP12.9□□□□□ -0.34
UPF1-211ENST00000600868 CTU2Q2VPK5 515 aaKnown RBP12.9□□□□□ -0.34
UPF1-211ENST00000600868 PDSS1Q5T2R2 415 aa12.9□□□□□ -0.34
UPF1-211ENST00000600868 FAM69AQ5T7M9 428 aa12.9□□□□□ -0.34
UPF1-211ENST00000600868 C1orf94Q6P1W5 598 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms