RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 IGF2P01344 180 aa16.93■□□□□ 0.3
UPF1-210ENST00000600689 ZP3P21754 424 aa16.93■□□□□ 0.3
UPF1-210ENST00000600689 FRRS1Q6ZNA5 592 aa16.93■□□□□ 0.3
UPF1-210ENST00000600689 TPRA1Q86W33 373 aa16.93■□□□□ 0.3
UPF1-210ENST00000600689 SMIM4Q8WVI0 70 aa16.93■□□□□ 0.3
UPF1-210ENST00000600689 TNFRSF13CQ96RJ3 184 aa16.93■□□□□ 0.3
UPF1-210ENST00000600689 CLDND1Q9NY35 253 aa16.93■□□□□ 0.3
UPF1-210ENST00000600689 ZNF346Q9UL40 294 aaKnown RBP16.93■□□□□ 0.3
UPF1-210ENST00000600689 CAMK2AQ9UQM7 478 aa16.93■□□□□ 0.3
UPF1-210ENST00000600689 ZNF780BQ9Y6R6 833 aa16.93■□□□□ 0.3
UPF1-210ENST00000600689 TRBV23OR9-2A0A075B6M9 112 aa16.93■□□□□ 0.3
UPF1-210ENST00000600689 MFSD2BA6NFX1 497 aa16.93■□□□□ 0.3
UPF1-210ENST00000600689 FGF19O95750 216 aa16.93■□□□□ 0.3
UPF1-210ENST00000600689 CBX7O95931 251 aa16.93■□□□□ 0.3
UPF1-210ENST00000600689 TMIGD3P0DMS9 266 aaPredicted RBP16.93■□□□□ 0.3
UPF1-210ENST00000600689 HTR2AP28223 471 aa16.93■□□□□ 0.3
UPF1-210ENST00000600689 ZNF273Q14593 569 aa16.93■□□□□ 0.3
UPF1-210ENST00000600689 FNDC3BQ53EP0 1204 aaKnown RBP16.93■□□□□ 0.3
UPF1-210ENST00000600689 HSD17B12Q53GQ0 312 aa16.93■□□□□ 0.3
UPF1-210ENST00000600689 YOD1Q5VVQ6 348 aaPredicted RBP16.93■□□□□ 0.3
UPF1-210ENST00000600689 ZDHHC1Q8WTX9 485 aa16.93■□□□□ 0.3
UPF1-210ENST00000600689 DPEP2Q9H4A9 486 aa16.93■□□□□ 0.3
UPF1-210ENST00000600689 CD93Q9NPY3 652 aa16.93■□□□□ 0.3
UPF1-210ENST00000600689 STON1Q9Y6Q2 735 aa16.93■□□□□ 0.3
UPF1-210ENST00000600689 BHLHE40O14503 412 aa16.93■□□□□ 0.3
UPF1-210ENST00000600689 TPMTP51580 245 aa16.93■□□□□ 0.3
UPF1-210ENST00000600689 HLXQ14774 488 aaPredicted RBP16.93■□□□□ 0.3
UPF1-210ENST00000600689 BPIFA2Q96DR5 249 aa16.93■□□□□ 0.3
UPF1-210ENST00000600689 MED17Q9NVC6 651 aa16.93■□□□□ 0.3
UPF1-210ENST00000600689 TAS2R10Q9NYW0 307 aa16.93■□□□□ 0.3
UPF1-210ENST00000600689 SLC22A31A6NKX4 558 aa16.92■□□□□ 0.3
UPF1-210ENST00000600689 CACNB4O00305 520 aaPredicted RBP16.92■□□□□ 0.3
UPF1-210ENST00000600689 LAMP2P13473 410 aa16.92■□□□□ 0.3
UPF1-210ENST00000600689 ZNF35P13682 527 aa16.92■□□□□ 0.3
UPF1-210ENST00000600689 MAT2AP31153 395 aaKnown RBP16.92■□□□□ 0.3
UPF1-210ENST00000600689 OR1Q1Q15612 314 aa16.92■□□□□ 0.3
UPF1-210ENST00000600689 DUSP5Q16690 384 aa16.92■□□□□ 0.3
UPF1-210ENST00000600689 ZNF454Q8N9F8 522 aa16.92■□□□□ 0.3
UPF1-210ENST00000600689 OR5K2Q8NHB8 316 aa16.92■□□□□ 0.3
UPF1-210ENST00000600689 RELTQ969Z4 430 aa16.92■□□□□ 0.3
UPF1-210ENST00000600689 WBP1Q96G27 269 aa16.92■□□□□ 0.3
UPF1-210ENST00000600689 PTCHD1Q96NR3 888 aa16.92■□□□□ 0.3
UPF1-210ENST00000600689 FAM83CQ9BQN1 747 aa16.92■□□□□ 0.3
UPF1-210ENST00000600689 GRXCR1A8MXD5 290 aa16.92■□□□□ 0.3
UPF1-210ENST00000600689 MCRIP1C9JLW8 97 aa16.92■□□□□ 0.3
UPF1-210ENST00000600689 KLF4O43474 513 aa16.92■□□□□ 0.3
UPF1-210ENST00000600689 SUSD5O60279 629 aa16.92■□□□□ 0.3
UPF1-210ENST00000600689 DNAJB6O75190 326 aa16.92■□□□□ 0.3
UPF1-210ENST00000600689 OTPQ5XKR4 325 aa16.92■□□□□ 0.3
UPF1-210ENST00000600689 HDDC3Q8N4P3 179 aa16.92■□□□□ 0.3
UPF1-210ENST00000600689 SP7Q8TDD2 431 aaPredicted RBP16.92■□□□□ 0.3
UPF1-210ENST00000600689 PELI1Q96FA3 418 aa16.92■□□□□ 0.3
UPF1-210ENST00000600689 SLC7A5P2Q9GIP4 190 aa16.92■□□□□ 0.3
UPF1-210ENST00000600689 CERS4Q9HA82 394 aa16.92■□□□□ 0.3
UPF1-210ENST00000600689 PELI2Q9HAT8 420 aa16.92■□□□□ 0.3
UPF1-210ENST00000600689 SYT5O00445 386 aa16.91■□□□□ 0.3
UPF1-210ENST00000600689 CREBL2O60519 120 aaPredicted RBP16.91■□□□□ 0.3
UPF1-210ENST00000600689 KRT33AO76009 404 aa16.91■□□□□ 0.3
UPF1-210ENST00000600689 ATP1B1P05026 303 aa16.91■□□□□ 0.3
UPF1-210ENST00000600689 RPL35P42766 123 aaKnown RBP16.91■□□□□ 0.3
UPF1-210ENST00000600689 NRG3P56975 720 aa16.91■□□□□ 0.3
UPF1-210ENST00000600689 KCNAB1Q14722 419 aa16.91■□□□□ 0.3
UPF1-210ENST00000600689 TMEM69Q5SWH9 247 aa16.91■□□□□ 0.3
UPF1-210ENST00000600689 MRPL2Q5T653 305 aaKnown RBP16.91■□□□□ 0.3
UPF1-210ENST00000600689 METTL11BQ5VVY1 283 aa16.91■□□□□ 0.3
UPF1-210ENST00000600689 HDDC2Q7Z4H3 204 aa16.91■□□□□ 0.3
UPF1-210ENST00000600689 OR8S1Q8NH09 359 aa16.91■□□□□ 0.3
UPF1-210ENST00000600689 SYNPRQ8TBG9 265 aa16.91■□□□□ 0.3
UPF1-210ENST00000600689 MS4A6EQ96DS6 147 aa16.91■□□□□ 0.3
UPF1-210ENST00000600689 PRSS27Q9BQR3 290 aa16.91■□□□□ 0.3
UPF1-210ENST00000600689 ACTR6Q9GZN1 396 aa16.91■□□□□ 0.3
UPF1-210ENST00000600689 TSPAN10Q9H1Z9 355 aaPredicted RBP16.91■□□□□ 0.3
UPF1-210ENST00000600689 IFT46Q9NQC8 304 aa16.91■□□□□ 0.3
UPF1-210ENST00000600689 GOSR2O14653 212 aa16.91■□□□□ 0.3
UPF1-210ENST00000600689 RP2O75695 350 aa16.91■□□□□ 0.3
UPF1-210ENST00000600689 UGT2B7P16662 529 aa16.91■□□□□ 0.3
UPF1-210ENST00000600689 ERVK-21P61565 698 aa16.91■□□□□ 0.3
UPF1-210ENST00000600689 DMKNQ6E0U4 476 aaPredicted RBP16.91■□□□□ 0.3
UPF1-210ENST00000600689 ELP2Q6IA86 826 aa16.91■□□□□ 0.3
UPF1-210ENST00000600689 RGS7BPQ6MZT1 257 aaPredicted RBP16.91■□□□□ 0.3
UPF1-210ENST00000600689 CDK20Q8IZL9 346 aa16.91■□□□□ 0.3
UPF1-210ENST00000600689 DNAJA3Q96EY1 480 aa16.91■□□□□ 0.3
UPF1-210ENST00000600689 MRPS30Q9NP92 439 aaKnown RBP16.91■□□□□ 0.3
UPF1-210ENST00000600689 PLSCR5A0PG75 271 aa16.9■□□□□ 0.3
UPF1-210ENST00000600689 PYCARD-AS1I3L0S3 204 aa16.9■□□□□ 0.3
UPF1-210ENST00000600689 F3P13726 295 aa16.9■□□□□ 0.3
UPF1-210ENST00000600689 WASP42768 502 aa16.9■□□□□ 0.3
UPF1-210ENST00000600689 SHC2P98077 582 aa16.9■□□□□ 0.3
UPF1-210ENST00000600689 TRMT12Q53H54 448 aaKnown RBP16.9■□□□□ 0.3
UPF1-210ENST00000600689 BEX5Q5H9J7 111 aa16.9■□□□□ 0.3
UPF1-210ENST00000600689 PXKQ7Z7A4 578 aa16.9■□□□□ 0.3
UPF1-210ENST00000600689 ZSCAN2Q7Z7L9 614 aaPredicted RBP16.9■□□□□ 0.3
UPF1-210ENST00000600689 GJD3Q8N144 294 aa16.9■□□□□ 0.3
UPF1-210ENST00000600689 ACTRT3Q9BYD9 372 aa16.9■□□□□ 0.3
UPF1-210ENST00000600689 COL4A3Q01955 1670 aa16.9■□□□□ 0.3
UPF1-210ENST00000600689 PCDH8O95206 1070 aa16.9■□□□□ 0.3
UPF1-210ENST00000600689 ASGR2P07307 311 aa16.9■□□□□ 0.3
UPF1-210ENST00000600689 BMP8BP34820 402 aa16.9■□□□□ 0.3
UPF1-210ENST00000600689 BDH1Q02338 343 aa16.9■□□□□ 0.3
UPF1-210ENST00000600689 PLA2G7Q13093 441 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms