RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 NFKBIDQ8NI38 313 aa12.59□□□□□ -0.39
LIG1-218ENST00000599322 MAL2Q969L2 176 aa12.59□□□□□ -0.39
LIG1-218ENST00000599322 PIK3IP1Q96FE7 263 aa12.59□□□□□ -0.39
LIG1-218ENST00000599322 PSD2Q9BQI7 771 aa12.59□□□□□ -0.39
LIG1-218ENST00000599322 TMEM120AQ9BXJ8 343 aa12.59□□□□□ -0.39
LIG1-218ENST00000599322 POTEKPQ9BYX7 375 aa12.59□□□□□ -0.39
LIG1-218ENST00000599322 ACTR6Q9GZN1 396 aa12.59□□□□□ -0.39
LIG1-218ENST00000599322 TMEM38AQ9H6F2 299 aa12.59□□□□□ -0.39
LIG1-218ENST00000599322 EVA1AQ9H8M9 152 aa12.59□□□□□ -0.39
LIG1-218ENST00000599322 VAPAQ9P0L0 249 aa12.59□□□□□ -0.39
LIG1-218ENST00000599322 ST6GALNAC2Q9UJ37 374 aa12.59□□□□□ -0.39
LIG1-218ENST00000599322 NOSIPQ9Y314 301 aaKnown RBP12.59□□□□□ -0.39
LIG1-218ENST00000599322 ZFHX3Q15911 3703 aa12.59□□□□□ -0.39
LIG1-218ENST00000599322 SETD2Q9BYW2 2564 aaPredicted RBP12.59□□□□□ -0.39
LIG1-218ENST00000599322 A8MVM7 634 aa12.58□□□□□ -0.4
LIG1-218ENST00000599322 SMAD9O15198 467 aaKnown RBP12.58□□□□□ -0.4
LIG1-218ENST00000599322 ATP8B1O43520 1251 aa12.58□□□□□ -0.4
LIG1-218ENST00000599322 BCAS1O75363 584 aaPredicted RBP12.58□□□□□ -0.4
LIG1-218ENST00000599322 MRPL33O75394 65 aaKnown RBP12.58□□□□□ -0.4
LIG1-218ENST00000599322 RAF1P04049 648 aa12.58□□□□□ -0.4
LIG1-218ENST00000599322 HRGP04196 525 aa12.58□□□□□ -0.4
LIG1-218ENST00000599322 NUDT7P0C024 238 aa12.58□□□□□ -0.4
LIG1-218ENST00000599322 GPX2P18283 190 aa12.58□□□□□ -0.4
LIG1-218ENST00000599322 PSMB1P20618 241 aaKnown RBP12.58□□□□□ -0.4
LIG1-218ENST00000599322 PRKAR1BP31321 381 aa12.58□□□□□ -0.4
LIG1-218ENST00000599322 NR1H2P55055 460 aa12.58□□□□□ -0.4
LIG1-218ENST00000599322 RBBP4Q09028 425 aa12.58□□□□□ -0.4
LIG1-218ENST00000599322 SCARB2Q14108 478 aa12.58□□□□□ -0.4
LIG1-218ENST00000599322 BEX5Q5H9J7 111 aa12.58□□□□□ -0.4
LIG1-218ENST00000599322 STAC2Q6ZMT1 411 aa12.58□□□□□ -0.4
LIG1-218ENST00000599322 NUFIP2Q7Z417 695 aaKnown RBP12.58□□□□□ -0.4
LIG1-218ENST00000599322 HIPK4Q8NE63 616 aa12.58□□□□□ -0.4
LIG1-218ENST00000599322 KISS1RQ969F8 398 aaPredicted RBP12.58□□□□□ -0.4
LIG1-218ENST00000599322 OR11A1Q9GZK7 315 aa12.58□□□□□ -0.4
LIG1-218ENST00000599322 ADAM19Q9H013 955 aa12.58□□□□□ -0.4
LIG1-218ENST00000599322 SLC25A37Q9NYZ2 338 aa12.58□□□□□ -0.4
LIG1-218ENST00000599322 SLAMF8Q9P0V8 285 aa12.58□□□□□ -0.4
LIG1-218ENST00000599322 GMEB1Q9Y692 573 aa12.58□□□□□ -0.4
LIG1-218ENST00000599322 SPG11Q96JI7 2443 aa12.58□□□□□ -0.4
LIG1-218ENST00000599322 TMEM72A0PK05 275 aa12.57□□□□□ -0.4
LIG1-218ENST00000599322 ELOA3DA6NLF2 546 aaPredicted RBP12.57□□□□□ -0.4
LIG1-218ENST00000599322 CNOT4O95628 575 aaKnown RBP12.57□□□□□ -0.4
LIG1-218ENST00000599322 ADAP00813 363 aa12.57□□□□□ -0.4
LIG1-218ENST00000599322 FPR1P21462 350 aa12.57□□□□□ -0.4
LIG1-218ENST00000599322 OR3A2P47893 321 aa12.57□□□□□ -0.4
LIG1-218ENST00000599322 IST1P53990 364 aa12.57□□□□□ -0.4
LIG1-218ENST00000599322 ITGADQ13349 1161 aa12.57□□□□□ -0.4
LIG1-218ENST00000599322 CAPRIN1Q14444 709 aaKnown RBP12.57□□□□□ -0.4
LIG1-218ENST00000599322 MAPK11Q15759 364 aa12.57□□□□□ -0.4
LIG1-218ENST00000599322 ELOA3BQ3SY89 546 aa12.57□□□□□ -0.4
LIG1-218ENST00000599322 RUNDC3AQ59EK9 446 aa12.57□□□□□ -0.4
LIG1-218ENST00000599322 SFRP5Q5T4F7 317 aa12.57□□□□□ -0.4
LIG1-218ENST00000599322 INTS11Q5TA45 600 aaKnown RBP12.57□□□□□ -0.4
LIG1-218ENST00000599322 TMEM225Q6GV28 225 aa12.57□□□□□ -0.4
LIG1-218ENST00000599322 ALKBH2Q6NS38 261 aa12.57□□□□□ -0.4
LIG1-218ENST00000599322 TFAP2EQ6VUC0 442 aa12.57□□□□□ -0.4
LIG1-218ENST00000599322 Q6ZT83 130 aa12.57□□□□□ -0.4
LIG1-218ENST00000599322 CXorf67Q86X51 503 aaPredicted RBP12.57□□□□□ -0.4
LIG1-218ENST00000599322 WFDC8Q8IUA0 241 aa12.57□□□□□ -0.4
LIG1-218ENST00000599322 ARMC8Q8IUR7 673 aa12.57□□□□□ -0.4
LIG1-218ENST00000599322 CLIP4Q8N3C7 705 aa12.57□□□□□ -0.4
LIG1-218ENST00000599322 DPP10Q8N608 796 aa12.57□□□□□ -0.4
LIG1-218ENST00000599322 PCYOX1LQ8NBM8 494 aa12.57□□□□□ -0.4
LIG1-218ENST00000599322 ELOA3Q8NG57 546 aa12.57□□□□□ -0.4
LIG1-218ENST00000599322 RNF217Q8TC41 542 aa12.57□□□□□ -0.4
LIG1-218ENST00000599322 SLC26A7Q8TE54 656 aa12.57□□□□□ -0.4
LIG1-218ENST00000599322 HSD17B8Q92506 261 aa12.57□□□□□ -0.4
LIG1-218ENST00000599322 APH1AQ96BI3 265 aa12.57□□□□□ -0.4
LIG1-218ENST00000599322 ZNF775Q96BV0 537 aaPredicted RBP12.57□□□□□ -0.4
LIG1-218ENST00000599322 ZNF524Q96C55 264 aa12.57□□□□□ -0.4
LIG1-218ENST00000599322 MUCL1Q96DR8 90 aa12.57□□□□□ -0.4
LIG1-218ENST00000599322 ARL5BQ96KC2 179 aa12.57□□□□□ -0.4
LIG1-218ENST00000599322 ANKRD27Q96NW4 1050 aa12.57□□□□□ -0.4
LIG1-218ENST00000599322 CGREF1Q99674 301 aa12.57□□□□□ -0.4
LIG1-218ENST00000599322 TRIM2Q9C040 744 aa12.57□□□□□ -0.4
LIG1-218ENST00000599322 TMEM27Q9HBJ8 222 aa12.57□□□□□ -0.4
LIG1-218ENST00000599322 CCM2LQ9NUG4 571 aaPredicted RBP12.57□□□□□ -0.4
LIG1-218ENST00000599322 FGFR1OP2Q9NVK5 253 aa12.57□□□□□ -0.4
LIG1-218ENST00000599322 C6orf203Q9P0P8 240 aaPredicted RBP12.57□□□□□ -0.4
LIG1-218ENST00000599322 UPB1Q9UBR1 384 aa12.57□□□□□ -0.4
LIG1-218ENST00000599322 MPDZO75970 2070 aa12.57□□□□□ -0.4
LIG1-218ENST00000599322 CIB4A0PJX0 185 aa12.56□□□□□ -0.4
LIG1-218ENST00000599322 AHSA1O95433 338 aa12.56□□□□□ -0.4
LIG1-218ENST00000599322 NPPAP01160 153 aa12.56□□□□□ -0.4
LIG1-218ENST00000599322 PNMTP11086 282 aa12.56□□□□□ -0.4
LIG1-218ENST00000599322 ACAA2P42765 397 aaKnown RBP12.56□□□□□ -0.4
LIG1-218ENST00000599322 PAQR6Q6TCH4 344 aa12.56□□□□□ -0.4
LIG1-218ENST00000599322 C5orf46Q6UWT4 87 aa12.56□□□□□ -0.4
LIG1-218ENST00000599322 PAMR1Q6UXH9 720 aa12.56□□□□□ -0.4
LIG1-218ENST00000599322 SERPINA11Q86U17 422 aa12.56□□□□□ -0.4
LIG1-218ENST00000599322 RANBP3LQ86VV4 465 aaPredicted RBP12.56□□□□□ -0.4
LIG1-218ENST00000599322 MSRB3Q8IXL7 192 aa12.56□□□□□ -0.4
LIG1-218ENST00000599322 OR52E4Q8NGH9 312 aa12.56□□□□□ -0.4
LIG1-218ENST00000599322 STK35Q8TDR2 534 aa12.56□□□□□ -0.4
LIG1-218ENST00000599322 DNAJA4Q8WW22 397 aaPredicted RBP12.56□□□□□ -0.4
LIG1-218ENST00000599322 NRGNQ92686 78 aa12.56□□□□□ -0.4
LIG1-218ENST00000599322 DNAJA3Q96EY1 480 aa12.56□□□□□ -0.4
LIG1-218ENST00000599322 FOXC2Q99958 501 aa12.56□□□□□ -0.4
LIG1-218ENST00000599322 SLC52A3Q9NQ40 469 aa12.56□□□□□ -0.4
LIG1-218ENST00000599322 GID8Q9NWU2 228 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms