RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 RP1L1Q8IWN7 2480 aaPredicted RBP9.47□□□□□ -0.89
LIG1-210ENST00000596332 ESPL1Q14674 2120 aa9.46□□□□□ -0.89
LIG1-210ENST00000596332 TRGV8A0A0C4DH27 118 aa9.46□□□□□ -0.9
LIG1-210ENST00000596332 TRAPPC13A5PLN9 417 aa9.46□□□□□ -0.9
LIG1-210ENST00000596332 LIPT2A6NK58 231 aa9.46□□□□□ -0.9
LIG1-210ENST00000596332 EIF1AYO14602 144 aaKnown RBP9.46□□□□□ -0.9
LIG1-210ENST00000596332 PRRG2O14669 202 aa9.46□□□□□ -0.9
LIG1-210ENST00000596332 SMAD9O15198 467 aaKnown RBP9.46□□□□□ -0.9
LIG1-210ENST00000596332 SEC14L5O43304 696 aa9.46□□□□□ -0.9
LIG1-210ENST00000596332 CHP2O43745 196 aa9.46□□□□□ -0.9
LIG1-210ENST00000596332 DIRAS1O95057 198 aa9.46□□□□□ -0.9
LIG1-210ENST00000596332 LDLRP01130 860 aa9.46□□□□□ -0.9
LIG1-210ENST00000596332 ENPP1P22413 925 aa9.46□□□□□ -0.9
LIG1-210ENST00000596332 CLK1P49759 484 aaKnown RBP9.46□□□□□ -0.9
LIG1-210ENST00000596332 DIO1P49895 249 aa9.46□□□□□ -0.9
LIG1-210ENST00000596332 MAP2K6P52564 334 aa9.46□□□□□ -0.9
LIG1-210ENST00000596332 AGFG1P52594 562 aaKnown RBP9.46□□□□□ -0.9
LIG1-210ENST00000596332 KCNC4Q03721 635 aa9.46□□□□□ -0.9
LIG1-210ENST00000596332 FOXF2Q12947 444 aa9.46□□□□□ -0.9
LIG1-210ENST00000596332 MYBPHQ13203 477 aa9.46□□□□□ -0.9
LIG1-210ENST00000596332 FHL1Q13642 323 aa9.46□□□□□ -0.9
LIG1-210ENST00000596332 CCNIQ14094 377 aa9.46□□□□□ -0.9
LIG1-210ENST00000596332 C4orf17Q53FE4 359 aa9.46□□□□□ -0.9
LIG1-210ENST00000596332 C1orf185Q5T7R7 199 aa9.46□□□□□ -0.9
LIG1-210ENST00000596332 C3orf33Q6P1S2 294 aa9.46□□□□□ -0.9
LIG1-210ENST00000596332 CCDC121Q6ZUS5 278 aa9.46□□□□□ -0.9
LIG1-210ENST00000596332 YTHDF3Q7Z739 585 aaKnown RBP9.46□□□□□ -0.9
LIG1-210ENST00000596332 FJX1Q86VR8 437 aa9.46□□□□□ -0.9
LIG1-210ENST00000596332 ATCAYQ86WG3 371 aa9.46□□□□□ -0.9
LIG1-210ENST00000596332 DHFR2Q86XF0 187 aa9.46□□□□□ -0.9
LIG1-210ENST00000596332 PIK3C3Q8NEB9 887 aa9.46□□□□□ -0.9
LIG1-210ENST00000596332 DNAJA4Q8WW22 397 aaPredicted RBP9.46□□□□□ -0.9
LIG1-210ENST00000596332 GEMIN6Q8WXD5 167 aaKnown RBP9.46□□□□□ -0.9
LIG1-210ENST00000596332 SMPDL3BQ92485 455 aa9.46□□□□□ -0.9
LIG1-210ENST00000596332 CCDC124Q96CT7 223 aaKnown RBP9.46□□□□□ -0.9
LIG1-210ENST00000596332 SLC41A3Q96GZ6 507 aa9.46□□□□□ -0.9
LIG1-210ENST00000596332 CCDC120Q96HB5 630 aa9.46□□□□□ -0.9
LIG1-210ENST00000596332 TP63Q9H3D4 680 aaPredicted RBP9.46□□□□□ -0.9
LIG1-210ENST00000596332 MMADHCQ9H3L0 296 aaPredicted RBP9.46□□□□□ -0.9
LIG1-210ENST00000596332 TMEM27Q9HBJ8 222 aa9.46□□□□□ -0.9
LIG1-210ENST00000596332 IL1RAPQ9NPH3 570 aa9.46□□□□□ -0.9
LIG1-210ENST00000596332 SEC14L4Q9UDX3 406 aa9.46□□□□□ -0.9
LIG1-210ENST00000596332 SH3BGRL2Q9UJC5 107 aa9.46□□□□□ -0.9
LIG1-210ENST00000596332 RPS6KA6Q9UK32 745 aa9.46□□□□□ -0.9
LIG1-210ENST00000596332 SLC7A7Q9UM01 511 aa9.46□□□□□ -0.9
LIG1-210ENST00000596332 SAMD4AQ9UPU9 718 aaKnown RBP9.46□□□□□ -0.9
LIG1-210ENST00000596332 TRAPPC4Q9Y296 219 aa9.46□□□□□ -0.9
LIG1-210ENST00000596332 SLC9A8Q9Y2E8 581 aa9.46□□□□□ -0.9
LIG1-210ENST00000596332 NCOA6Q14686 2063 aaPredicted RBP9.45□□□□□ -0.9
LIG1-210ENST00000596332 A0A0G2JNJ9 132 aa9.45□□□□□ -0.9
LIG1-210ENST00000596332 AQP12BA6NM10 295 aa9.45□□□□□ -0.9
LIG1-210ENST00000596332 A8MVM7 634 aa9.45□□□□□ -0.9
LIG1-210ENST00000596332 LRRN3E7EW58 273 aa9.45□□□□□ -0.9
LIG1-210ENST00000596332 hCG_2039718K7EN88 272 aa9.45□□□□□ -0.9
LIG1-210ENST00000596332 HAX1O00165 279 aa9.45□□□□□ -0.9
LIG1-210ENST00000596332 CCL21O00585 134 aa9.45□□□□□ -0.9
LIG1-210ENST00000596332 OR5F1O95221 314 aa9.45□□□□□ -0.9
LIG1-210ENST00000596332 PMS2P2O95744 297 aa9.45□□□□□ -0.9
LIG1-210ENST00000596332 BGLAPP02818 100 aa9.45□□□□□ -0.9
LIG1-210ENST00000596332 HOXD4P09016 255 aaPredicted RBP9.45□□□□□ -0.9
LIG1-210ENST00000596332 GABRA1P14867 456 aa9.45□□□□□ -0.9
LIG1-210ENST00000596332 PTNP21246 168 aa9.45□□□□□ -0.9
LIG1-210ENST00000596332 CXCR1P25024 350 aa9.45□□□□□ -0.9
LIG1-210ENST00000596332 LIMS1P48059 325 aa9.45□□□□□ -0.9
LIG1-210ENST00000596332 RASSF2P50749 326 aa9.45□□□□□ -0.9
LIG1-210ENST00000596332 UGT2B15P54855 530 aa9.45□□□□□ -0.9
LIG1-210ENST00000596332 CARD18P57730 90 aa9.45□□□□□ -0.9
LIG1-210ENST00000596332 RAC3P60763 192 aa9.45□□□□□ -0.9
LIG1-210ENST00000596332 COPZ1P61923 177 aa9.45□□□□□ -0.9
LIG1-210ENST00000596332 RBPJQ06330 500 aa9.45□□□□□ -0.9
LIG1-210ENST00000596332 PMPCAQ10713 525 aa9.45□□□□□ -0.9
LIG1-210ENST00000596332 ZNF239Q16600 458 aaKnown RBP9.45□□□□□ -0.9
LIG1-210ENST00000596332 ALG10BQ5I7T1 473 aa9.45□□□□□ -0.9
LIG1-210ENST00000596332 SWT1Q5T5J6 900 aaKnown RBP9.45□□□□□ -0.9
LIG1-210ENST00000596332 HBMQ6B0K9 141 aa9.45□□□□□ -0.9
LIG1-210ENST00000596332 TBPL2Q6SJ96 375 aa9.45□□□□□ -0.9
LIG1-210ENST00000596332 DEF8Q6ZN54 512 aa9.45□□□□□ -0.9
LIG1-210ENST00000596332 RANBP3LQ86VV4 465 aaPredicted RBP9.45□□□□□ -0.9
LIG1-210ENST00000596332 AQP12AQ8IXF9 295 aa9.45□□□□□ -0.9
LIG1-210ENST00000596332 PM20D2Q8IYS1 436 aa9.45□□□□□ -0.9
LIG1-210ENST00000596332 PAPD5Q8NDF8 572 aaKnown RBP9.45□□□□□ -0.9
LIG1-210ENST00000596332 FNDC9Q8TBE3 224 aa9.45□□□□□ -0.9
LIG1-210ENST00000596332 STK35Q8TDR2 534 aa9.45□□□□□ -0.9
LIG1-210ENST00000596332 SLC25A43Q8WUT9 341 aaPredicted RBP9.45□□□□□ -0.9
LIG1-210ENST00000596332 TMEM255BQ8WV15 326 aa9.45□□□□□ -0.9
LIG1-210ENST00000596332 CANT1Q8WVQ1 401 aa9.45□□□□□ -0.9
LIG1-210ENST00000596332 ROBO4Q8WZ75 1007 aa9.45□□□□□ -0.9
LIG1-210ENST00000596332 LZICQ8WZA0 190 aa9.45□□□□□ -0.9
LIG1-210ENST00000596332 WNT2BQ93097 391 aa9.45□□□□□ -0.9
LIG1-210ENST00000596332 DTNBP1Q96EV8 351 aa9.45□□□□□ -0.9
LIG1-210ENST00000596332 SLC47A1Q96FL8 570 aa9.45□□□□□ -0.9
LIG1-210ENST00000596332 PRRC1Q96M27 445 aa9.45□□□□□ -0.9
LIG1-210ENST00000596332 OR5B2Q96R09 309 aa9.45□□□□□ -0.9
LIG1-210ENST00000596332 TRIB1Q96RU8 372 aa9.45□□□□□ -0.9
LIG1-210ENST00000596332 TMEM43Q9BTV4 400 aa9.45□□□□□ -0.9
LIG1-210ENST00000596332 POLR2J2Q9GZM3 115 aaKnown RBP9.45□□□□□ -0.9
LIG1-210ENST00000596332 POLR2J3Q9H1A7 115 aaKnown RBP9.45□□□□□ -0.9
LIG1-210ENST00000596332 RNF122Q9H9V4 155 aa9.45□□□□□ -0.9
LIG1-210ENST00000596332 NMNAT1Q9HAN9 279 aaPredicted RBP9.45□□□□□ -0.9
LIG1-210ENST00000596332 ALKBH4Q9NXW9 302 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms