RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 ADAM19Q9H013 955 aa13.55□□□□□ -0.24
TRIM28-203ENST00000593582 UBTD1Q9HAC8 227 aa13.55□□□□□ -0.24
TRIM28-203ENST00000593582 BCL2L10Q9HD36 194 aa13.55□□□□□ -0.24
TRIM28-203ENST00000593582 SLC25A37Q9NYZ2 338 aa13.55□□□□□ -0.24
TRIM28-203ENST00000593582 SLAMF8Q9P0V8 285 aa13.55□□□□□ -0.24
TRIM28-203ENST00000593582 TRIM33Q9UPN9 1127 aa13.55□□□□□ -0.24
TRIM28-203ENST00000593582 ZNF469Q96JG9 3925 aaPredicted RBP13.54□□□□□ -0.24
TRIM28-203ENST00000593582 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.54□□□□□ -0.24
TRIM28-203ENST00000593582 TMEM72A0PK05 275 aa13.54□□□□□ -0.24
TRIM28-203ENST00000593582 ZNF814B7Z6K7 855 aa13.54□□□□□ -0.24
TRIM28-203ENST00000593582 GPR171O14626 319 aa13.54□□□□□ -0.24
TRIM28-203ENST00000593582 KLF4O43474 513 aa13.54□□□□□ -0.24
TRIM28-203ENST00000593582 EIF1BO60739 113 aaKnown RBP13.54□□□□□ -0.24
TRIM28-203ENST00000593582 SASH3O75995 380 aa13.54□□□□□ -0.24
TRIM28-203ENST00000593582 CNOT4O95628 575 aaKnown RBP13.54□□□□□ -0.24
TRIM28-203ENST00000593582 FPR1P21462 350 aa13.54□□□□□ -0.24
TRIM28-203ENST00000593582 ACAA2P42765 397 aaKnown RBP13.54□□□□□ -0.24
TRIM28-203ENST00000593582 SLC35A1P78382 337 aa13.54□□□□□ -0.24
TRIM28-203ENST00000593582 ACKR1Q16570 336 aa13.54□□□□□ -0.24
TRIM28-203ENST00000593582 ZNF311Q5JNZ3 666 aa13.54□□□□□ -0.24
TRIM28-203ENST00000593582 PAGE3Q5JUK9 113 aa13.54□□□□□ -0.24
TRIM28-203ENST00000593582 GCNT6Q5T4J0 391 aa13.54□□□□□ -0.24
TRIM28-203ENST00000593582 WBP2NLQ6ICG8 309 aa13.54□□□□□ -0.24
TRIM28-203ENST00000593582 ALKBH2Q6NS38 261 aa13.54□□□□□ -0.24
TRIM28-203ENST00000593582 TGIF2LYQ8IUE0 185 aa13.54□□□□□ -0.24
TRIM28-203ENST00000593582 MSRB3Q8IXL7 192 aa13.54□□□□□ -0.24
TRIM28-203ENST00000593582 CLIP4Q8N3C7 705 aa13.54□□□□□ -0.24
TRIM28-203ENST00000593582 CADM2Q8N3J6 435 aa13.54□□□□□ -0.24
TRIM28-203ENST00000593582 BBS10Q8TAM1 723 aa13.54□□□□□ -0.24
TRIM28-203ENST00000593582 HSD17B8Q92506 261 aa13.54□□□□□ -0.24
TRIM28-203ENST00000593582 PIGTQ969N2 578 aa13.54□□□□□ -0.24
TRIM28-203ENST00000593582 THOC1Q96FV9 657 aaKnown RBP13.54□□□□□ -0.24
TRIM28-203ENST00000593582 SIKE1Q9BRV8 207 aa13.54□□□□□ -0.24
TRIM28-203ENST00000593582 NAA11Q9BSU3 229 aaPredicted RBP13.54□□□□□ -0.24
TRIM28-203ENST00000593582 NGBQ9NPG2 151 aa13.54□□□□□ -0.24
TRIM28-203ENST00000593582 SLC52A3Q9NQ40 469 aa13.54□□□□□ -0.24
TRIM28-203ENST00000593582 BEX4Q9NWD9 120 aaPredicted RBP13.54□□□□□ -0.24
TRIM28-203ENST00000593582 DCTN4Q9UJW0 460 aa13.54□□□□□ -0.24
TRIM28-203ENST00000593582 CORO2BQ9UQ03 480 aa13.54□□□□□ -0.24
TRIM28-203ENST00000593582 A0A1W2PP18 115 aa13.53□□□□□ -0.24
TRIM28-203ENST00000593582 ZNF716A6NP11 495 aa13.53□□□□□ -0.24
TRIM28-203ENST00000593582 EVPLLA8MZ36 301 aa13.53□□□□□ -0.24
TRIM28-203ENST00000593582 PGM3O95394 542 aa13.53□□□□□ -0.24
TRIM28-203ENST00000593582 CD99P14209 185 aa13.53□□□□□ -0.24
TRIM28-203ENST00000593582 ETS2P15036 469 aa13.53□□□□□ -0.24
TRIM28-203ENST00000593582 LOXP28300 417 aaPredicted RBP13.53□□□□□ -0.24
TRIM28-203ENST00000593582 H3F3AP84243 136 aa13.53□□□□□ -0.24
TRIM28-203ENST00000593582 TSC22D1Q15714 1073 aa13.53□□□□□ -0.24
TRIM28-203ENST00000593582 C20orf204Q6ZNR8 217 aa13.53□□□□□ -0.24
TRIM28-203ENST00000593582 BHLHA15Q7RTS1 189 aaPredicted RBP13.53□□□□□ -0.24
TRIM28-203ENST00000593582 CCDC103Q8IW40 242 aa13.53□□□□□ -0.24
TRIM28-203ENST00000593582 PLPPR2Q96GM1 343 aa13.53□□□□□ -0.24
TRIM28-203ENST00000593582 NPHS2Q9NP85 383 aa13.53□□□□□ -0.24
TRIM28-203ENST00000593582 VAPAQ9P0L0 249 aa13.53□□□□□ -0.24
TRIM28-203ENST00000593582 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.53□□□□□ -0.24
TRIM28-203ENST00000593582 PRSS50Q9UI38 385 aa13.53□□□□□ -0.24
TRIM28-203ENST00000593582 NOSIPQ9Y314 301 aaKnown RBP13.53□□□□□ -0.24
TRIM28-203ENST00000593582 A0A0G2JND7 137 aa13.52□□□□□ -0.25
TRIM28-203ENST00000593582 ZC3H12DA2A288 527 aaKnown RBP13.52□□□□□ -0.25
TRIM28-203ENST00000593582 EDF1O60869 148 aaKnown RBP13.52□□□□□ -0.25
TRIM28-203ENST00000593582 LYZL6O75951 148 aa13.52□□□□□ -0.25
TRIM28-203ENST00000593582 GPIP06744 558 aa13.52□□□□□ -0.25
TRIM28-203ENST00000593582 ARAFP10398 606 aa13.52□□□□□ -0.25
TRIM28-203ENST00000593582 IMPDH2P12268 514 aa13.52□□□□□ -0.25
TRIM28-203ENST00000593582 PRG2P13727 222 aa13.52□□□□□ -0.25
TRIM28-203ENST00000593582 SLC16A1P53985 500 aa13.52□□□□□ -0.25
TRIM28-203ENST00000593582 TAB1Q15750 504 aa13.52□□□□□ -0.25
TRIM28-203ENST00000593582 REEP3Q6NUK4 255 aa13.52□□□□□ -0.25
TRIM28-203ENST00000593582 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.52□□□□□ -0.25
TRIM28-203ENST00000593582 SERPINA11Q86U17 422 aa13.52□□□□□ -0.25
TRIM28-203ENST00000593582 KRT73Q86Y46 540 aa13.52□□□□□ -0.25
TRIM28-203ENST00000593582 UBE2J2Q8N2K1 259 aa13.52□□□□□ -0.25
TRIM28-203ENST00000593582 NFKBIDQ8NI38 313 aa13.52□□□□□ -0.25
TRIM28-203ENST00000593582 SLC35B4Q969S0 331 aa13.52□□□□□ -0.25
TRIM28-203ENST00000593582 APH1AQ96BI3 265 aa13.52□□□□□ -0.25
TRIM28-203ENST00000593582 CCL19Q99731 98 aa13.52□□□□□ -0.25
TRIM28-203ENST00000593582 TMUB1Q9BVT8 246 aa13.52□□□□□ -0.25
TRIM28-203ENST00000593582 POTEKPQ9BYX7 375 aa13.52□□□□□ -0.25
TRIM28-203ENST00000593582 CHST2Q9Y4C5 530 aa13.52□□□□□ -0.25
TRIM28-203ENST00000593582 GMEB1Q9Y692 573 aa13.52□□□□□ -0.25
TRIM28-203ENST00000593582 PRRC2AP48634 2157 aaKnown RBP13.52□□□□□ -0.25
TRIM28-203ENST00000593582 TRBV5-3A0A0A0MS03 114 aa13.51□□□□□ -0.25
TRIM28-203ENST00000593582 A8MVM7 634 aa13.51□□□□□ -0.25
TRIM28-203ENST00000593582 ANGPT2O15123 496 aa13.51□□□□□ -0.25
TRIM28-203ENST00000593582 MRPL33O75394 65 aaKnown RBP13.51□□□□□ -0.25
TRIM28-203ENST00000593582 SLC6A2P23975 617 aa13.51□□□□□ -0.25
TRIM28-203ENST00000593582 EDNRAP25101 427 aa13.51□□□□□ -0.25
TRIM28-203ENST00000593582 PRKAR1BP31321 381 aa13.51□□□□□ -0.25
TRIM28-203ENST00000593582 IDUAP35475 653 aa13.51□□□□□ -0.25
TRIM28-203ENST00000593582 ADAM8P78325 824 aa13.51□□□□□ -0.25
TRIM28-203ENST00000593582 CDK6Q00534 326 aa13.51□□□□□ -0.25
TRIM28-203ENST00000593582 CAPRIN1Q14444 709 aaKnown RBP13.51□□□□□ -0.25
TRIM28-203ENST00000593582 FBXW9Q5XUX1 488 aa13.51□□□□□ -0.25
TRIM28-203ENST00000593582 PAQR6Q6TCH4 344 aa13.51□□□□□ -0.25
TRIM28-203ENST00000593582 ZNF704Q6ZNC4 412 aaPredicted RBP13.51□□□□□ -0.25
TRIM28-203ENST00000593582 PIP5K1AQ99755 562 aa13.51□□□□□ -0.25
TRIM28-203ENST00000593582 SPATA5L1Q9BVQ7 753 aa13.51□□□□□ -0.25
TRIM28-203ENST00000593582 TMEM38AQ9H6F2 299 aa13.51□□□□□ -0.25
TRIM28-203ENST00000593582 ESRP2Q9H6T0 727 aaKnown RBP13.51□□□□□ -0.25
TRIM28-203ENST00000593582 PARPBPQ9NWS1 579 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms