RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, human

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VMP1-216	ENST00000592790	LIMS3	P0CW19	117 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	LIMS4	P0CW20	117 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	ELN	P15502	786 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	MAOA	P21397	527 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	CXCR1	P25024	350 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	PDHA2	P29803	388 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	BSG	P35613	385 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	GNAL	P38405	381 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	CAV3	P56539	151 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	VSX2	P58304	361 aa	Predicted RBP	3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	RAB8A	P61006	207 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	B4GALNT1	Q00973	533 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	MC2R	Q01718	297 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	TNFRSF17	Q02223	184 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	EEF1A2	Q05639	463 aa	Known RBP	3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	MAP4K2	Q12851	820 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	IL10RA	Q13651	578 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	HNRNPA1L2	Q32P51	320 aa	Known RBP	3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	RNASE10	Q5GAN6	216 aa	Known RBP	3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	DCST2	Q5T1A1	773 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	AWAT2	Q6E213	333 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	VIT	Q6UXI7	678 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	ZNF704	Q6ZNC4	412 aa	Predicted RBP	3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	TMUB2	Q71RG4	321 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	TRIL	Q7L0X0	811 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	PARS2	Q7L3T8	475 aa	Known RBP	3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	NDUFAF7	Q7L592	441 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	RAB11FIP2	Q7L804	512 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	HSD17B13	Q7Z5P4	300 aa	Predicted RBP	3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	TECPR1	Q7Z6L1	1165 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	TMEM150A	Q86TG1	271 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	FAM129C	Q86XR2	697 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	ANKRD53	Q8N9V6	530 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	CHST4	Q8NCG5	386 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	OR51A7	Q8NH64	312 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	LHFPL5	Q8TAF8	219 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	OIT3	Q8WWZ8	545 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	FAM46B	Q96A09	425 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	INTS12	Q96CB8	462 aa	Known RBP	3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	SMIM19	Q96E16	107 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	SCMH1	Q96GD3	660 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	SFXN2	Q96NB2	322 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	IL17F	Q96PD4	163 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	OR2M4	Q96R27	311 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	TEAD3	Q99594	435 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	TMPRSS13	Q9BYE2	586 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	BARHL1	Q9BZE3	327 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	MCOLN1	Q9GZU1	580 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	DNTTIP1	Q9H147	329 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	PPP1R3E	Q9H7J1	279 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	RRAGC	Q9HB90	399 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	ZNF334	Q9HCZ1	680 aa	Predicted RBP	3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	PRSS16	Q9NQE7	514 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	SLC17A5	Q9NRA2	495 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	MED9	Q9NWA0	146 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	SAGE1	Q9NXZ1	904 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	PLAGL1	Q9UM63	463 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	BORCS7-ASMT	A0A0B4J1R7	106 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	CCDC163	A0A0D9SF12	145 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	PCP4L1	A6NKN8	68 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	DLL1	O00548	723 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	PLA2G10	O15496	165 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	YKT6	O15498	198 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	NCR1	O76036	304 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	KAT7	O95251	611 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	PPP1R3D	O95685	299 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	RAB3D	O95716	219 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	CSTA	P01040	98 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	ADRB1	P08588	477 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	ZNF806	P0C7X5	589 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	C8orf89	P0DMQ9	161 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	CTSE	P14091	401 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	MGMT	P16455	207 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	C5AR1	P21730	350 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	CERS1	P27544	350 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	GABRA3	P34903	492 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	CTNNB1	P35222	781 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	OR3A2	P47893	321 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	RIDA	P52758	137 aa	Known RBP	3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	PCBP4	P57723	403 aa	Known RBP	3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	RAC1	P63000	192 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	LTB	Q06643	244 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	CAMK2D	Q13557	499 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	MFSD13A	Q14CX5	517 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	TEAD2	Q15562	447 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	KLHL26	Q53HC5	615 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	FAM109B	Q6ICB4	259 aa	Predicted RBP	3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	SLC18B1	Q6NT16	456 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	MFSD12	Q6NUT3	480 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	C5orf46	Q6UWT4	87 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	DLK2	Q6UY11	383 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	COMMD2	Q86X83	199 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	VRK2	Q86Y07	508 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	STPG2	Q8N412	459 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	ZCCHC10	Q8TBK6	192 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	LGALS14	Q8TCE9	139 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	ZDHHC1	Q8WTX9	485 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	UPRT	Q96BW1	309 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	ALG14	Q96F25	216 aa		3.28	□□□□□ -1.88
VMP1-216	ENST00000592790	PHYHIPL	Q96FC7	376 aa		3.28	□□□□□ -1.88

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