RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 B4GALT7Q9UBV7 327 aa2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 BTNL2Q9UIR0 455 aa2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 PTBP2Q9UKA9 531 aaKnown RBP2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 TMCO1Q9UM00 188 aa2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 CLEC4AQ9UMR7 237 aa2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 UBQLN1Q9UMX0 589 aaKnown RBP2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 PIGLQ9Y2B2 252 aa2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 KIF25-AS1Q9Y6Z4 181 aa2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 RPAP1Q9BWH6 1393 aaPredicted RBP2.69□□□□□ -1.98
SMCHD1-209ENST00000583441 SH3TC1Q8TE82 1336 aa2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 ADAMTS9Q9P2N4 1935 aa2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 TUBAL3A6NHL2 446 aa2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 SURF6O75683 361 aaKnown RBP2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 BBOX1O75936 387 aa2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 DIRAS1O95057 198 aa2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 SNAPINO95295 136 aa2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 IL1BP01584 269 aa2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 IGHV3-48P01763 117 aa2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 POLR2EP19388 210 aaKnown RBP2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 GABRR1P24046 479 aa2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 IL12AP29459 219 aa2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 HTR1FP30939 366 aa2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 CALCRP30988 508 aa2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 PTGDSP41222 190 aa2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 PKNOX1P55347 436 aa2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 HMGN5P82970 282 aaKnown RBP2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 KLRB1Q12918 225 aa2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 ZMYND11Q15326 602 aa2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 SAMD4BQ5PRF9 694 aaKnown RBP2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 OR4F3Q6IEY1 312 aa2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 UNQ9370/PRO34162Q6UXP9 181 aa2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 SCARA5Q6ZMJ2 495 aa2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 ACOT7LQ6ZUV0 252 aa2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 RUFY3Q7L099 469 aa2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 VRK2Q86Y07 508 aa2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 CCDC65Q8IXS2 484 aa2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 PRR22Q8IZ63 422 aa2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 OR2L13Q8N349 312 aa2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 ALLCQ8N6M5 410 aa2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 OR13C2Q8NGS9 318 aa2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 OR56B4Q8NH76 319 aa2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 PAQR8Q8TEZ7 354 aa2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 SETD7Q8WTS6 366 aaKnown RBP2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 OR1E3Q8WZA6 343 aa2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 ST8SIA1Q92185 356 aa2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 UBE2E3Q969T4 207 aa2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 HIST1H4GQ99525 98 aa2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 KLHDC3Q9BQ90 382 aa2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 EBF4Q9BQW3 602 aa2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 RNF126Q9BV68 326 aa2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 FN3KRPQ9HA64 309 aa2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 SH2D2AQ9NP31 389 aa2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 ADAM28Q9UKQ2 775 aa2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 MEMO1Q9Y316 297 aa2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 RPL36Q9Y3U8 105 aaKnown RBP2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 N6AMT1Q9Y5N5 214 aa2.68□□□□□ -1.98
SMCHD1-209ENST00000583441 A0A0U1RQS6 177 aa2.67□□□□□ -1.98
SMCHD1-209ENST00000583441 IQANK1A0A1B0GTG1 560 aa2.67□□□□□ -1.98
SMCHD1-209ENST00000583441 A0A1B0GUS0 222 aa2.67□□□□□ -1.98
SMCHD1-209ENST00000583441 VSTM2BA6NLU5 285 aa2.67□□□□□ -1.98
SMCHD1-209ENST00000583441 SNTNA6NMZ2 147 aa2.67□□□□□ -1.98
SMCHD1-209ENST00000583441 A8MXQ7 604 aa2.67□□□□□ -1.98
SMCHD1-209ENST00000583441 K7N7A8 449 aa2.67□□□□□ -1.98
SMCHD1-209ENST00000583441 RGS16O15492 202 aaPredicted RBP2.67□□□□□ -1.98
SMCHD1-209ENST00000583441 UGT1A9O60656 530 aa2.67□□□□□ -1.98
SMCHD1-209ENST00000583441 RAMP3O60896 148 aa2.67□□□□□ -1.98
SMCHD1-209ENST00000583441 B4GALT2O60909 372 aa2.67□□□□□ -1.98
SMCHD1-209ENST00000583441 ATP5LO75964 103 aa2.67□□□□□ -1.98
SMCHD1-209ENST00000583441 TSPAN12O95859 305 aa2.67□□□□□ -1.98
SMCHD1-209ENST00000583441 AQP1P29972 269 aa2.67□□□□□ -1.98
SMCHD1-209ENST00000583441 GNA11P29992 359 aa2.67□□□□□ -1.98
SMCHD1-209ENST00000583441 CCR1P32246 355 aa2.67□□□□□ -1.98
SMCHD1-209ENST00000583441 UGT1A5P35504 534 aa2.67□□□□□ -1.98
SMCHD1-209ENST00000583441 DUSP3P51452 185 aaPredicted RBP2.67□□□□□ -1.98
SMCHD1-209ENST00000583441 CDH4P55283 916 aa2.67□□□□□ -1.98
SMCHD1-209ENST00000583441 RIPK4P57078 832 aa2.67□□□□□ -1.98
SMCHD1-209ENST00000583441 LYZP61626 148 aa2.67□□□□□ -1.98
SMCHD1-209ENST00000583441 DDX39BQ13838 428 aaKnown RBP2.67□□□□□ -1.98
SMCHD1-209ENST00000583441 IMMTQ16891 758 aaKnown RBP2.67□□□□□ -1.98
SMCHD1-209ENST00000583441 KLF17Q5JT82 389 aaPredicted RBP2.67□□□□□ -1.98
SMCHD1-209ENST00000583441 C9orf129Q5T035 196 aaKnown RBP2.67□□□□□ -1.98
SMCHD1-209ENST00000583441 HSDL2Q6YN16 418 aa2.67□□□□□ -1.98
SMCHD1-209ENST00000583441 ZNF584Q8IVC4 421 aa2.67□□□□□ -1.98
SMCHD1-209ENST00000583441 FBXL16Q8N461 479 aa2.67□□□□□ -1.98
SMCHD1-209ENST00000583441 TMEM252Q8N6L7 170 aa2.67□□□□□ -1.98
SMCHD1-209ENST00000583441 OR2L5Q8NG80 312 aa2.67□□□□□ -1.98
SMCHD1-209ENST00000583441 CXorf40BQ96DE9 158 aa2.67□□□□□ -1.98
SMCHD1-209ENST00000583441 PGLYRP4Q96LB8 373 aa2.67□□□□□ -1.98
SMCHD1-209ENST00000583441 SLC38A2Q96QD8 506 aa2.67□□□□□ -1.98
SMCHD1-209ENST00000583441 YTHDF1Q9BYJ9 559 aaKnown RBP2.67□□□□□ -1.98
SMCHD1-209ENST00000583441 MAGT1Q9H0U3 335 aa2.67□□□□□ -1.98
SMCHD1-209ENST00000583441 REEP4Q9H6H4 257 aa2.67□□□□□ -1.98
SMCHD1-209ENST00000583441 AZI2Q9H6S1 392 aa2.67□□□□□ -1.98
SMCHD1-209ENST00000583441 VCPKMTQ9H867 229 aa2.67□□□□□ -1.98
SMCHD1-209ENST00000583441 PLGRKTQ9HBL7 147 aa2.67□□□□□ -1.98
SMCHD1-209ENST00000583441 BFARQ9NZS9 450 aa2.67□□□□□ -1.98
SMCHD1-209ENST00000583441 IFT52Q9Y366 437 aa2.67□□□□□ -1.98
SMCHD1-209ENST00000583441 IGHV3OR16-13A0A075B7E8 117 aa2.66□□□□□ -1.98
SMCHD1-209ENST00000583441 IGHV1OR21-1A0A087WYE8 117 aa2.66□□□□□ -1.98
SMCHD1-209ENST00000583441 CCDC182A6NF36 153 aa2.66□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms