RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 INPP5JQ15735 1006 aaPredicted RBP13.82□□□□□ -0.2
SS18-215ENST00000580642 INAQ16352 499 aa13.82□□□□□ -0.2
SS18-215ENST00000580642 ZNF74Q16587 644 aa13.82□□□□□ -0.2
SS18-215ENST00000580642 FAM69AQ5T7M9 428 aa13.82□□□□□ -0.2
SS18-215ENST00000580642 GALNTL5Q7Z4T8 443 aa13.82□□□□□ -0.2
SS18-215ENST00000580642 SLC22A16Q86VW1 577 aa13.82□□□□□ -0.2
SS18-215ENST00000580642 SETD9Q8NE22 299 aa13.82□□□□□ -0.2
SS18-215ENST00000580642 MFSD8Q8NHS3 518 aa13.82□□□□□ -0.2
SS18-215ENST00000580642 POC1BQ8TC44 478 aa13.82□□□□□ -0.2
SS18-215ENST00000580642 ZNF524Q96C55 264 aa13.82□□□□□ -0.2
SS18-215ENST00000580642 FAM46AQ96IP4 442 aaKnown RBP13.82□□□□□ -0.2
SS18-215ENST00000580642 HRASLS5Q96KN8 279 aa13.82□□□□□ -0.2
SS18-215ENST00000580642 JSRP1Q96MG2 331 aaPredicted RBP13.82□□□□□ -0.2
SS18-215ENST00000580642 MBOAT4Q96T53 435 aa13.82□□□□□ -0.2
SS18-215ENST00000580642 APOL4Q9BPW4 351 aa13.82□□□□□ -0.2
SS18-215ENST00000580642 KLHDC3Q9BQ90 382 aa13.82□□□□□ -0.2
SS18-215ENST00000580642 TEX12Q9BXU0 123 aa13.82□□□□□ -0.2
SS18-215ENST00000580642 ZNF703Q9H7S9 590 aaPredicted RBP13.82□□□□□ -0.2
SS18-215ENST00000580642 ACKR4Q9NPB9 350 aa13.82□□□□□ -0.2
SS18-215ENST00000580642 TUBD1Q9UJT1 453 aa13.82□□□□□ -0.2
SS18-215ENST00000580642 NDRG4Q9ULP0 352 aaKnown RBP13.82□□□□□ -0.2
SS18-215ENST00000580642 RAXQ9Y2V3 346 aa13.82□□□□□ -0.2
SS18-215ENST00000580642 HDGFL3Q9Y3E1 203 aa13.82□□□□□ -0.2
SS18-215ENST00000580642 ZNF337Q9Y3M9 751 aa13.82□□□□□ -0.2
SS18-215ENST00000580642 CORINQ9Y5Q5 1042 aa13.82□□□□□ -0.2
SS18-215ENST00000580642 CDH10Q9Y6N8 788 aa13.82□□□□□ -0.2
SS18-215ENST00000580642 CEP295Q9C0D2 2601 aa13.81□□□□□ -0.2
SS18-215ENST00000580642 GMFGO60234 142 aa13.81□□□□□ -0.2
SS18-215ENST00000580642 PTP4A3O75365 173 aa13.81□□□□□ -0.2
SS18-215ENST00000580642 OR7A10O76100 309 aa13.81□□□□□ -0.2
SS18-215ENST00000580642 AHSA1O95433 338 aa13.81□□□□□ -0.2
SS18-215ENST00000580642 SAGP10523 405 aaPredicted RBP13.81□□□□□ -0.2
SS18-215ENST00000580642 POU2F1P14859 743 aa13.81□□□□□ -0.2
SS18-215ENST00000580642 BMP7P18075 431 aa13.81□□□□□ -0.2
SS18-215ENST00000580642 CHMP24386 653 aa13.81□□□□□ -0.2
SS18-215ENST00000580642 PRPS1P60891 318 aa13.81□□□□□ -0.2
SS18-215ENST00000580642 RAC1P63000 192 aa13.81□□□□□ -0.2
SS18-215ENST00000580642 C1orf140Q5VVS0 124 aa13.81□□□□□ -0.2
SS18-215ENST00000580642 RPUSD3Q6P087 351 aaKnown RBP13.81□□□□□ -0.2
SS18-215ENST00000580642 ZNF620Q6ZNG0 422 aa13.81□□□□□ -0.2
SS18-215ENST00000580642 USP51Q70EK9 711 aa13.81□□□□□ -0.2
SS18-215ENST00000580642 GALNT5Q7Z7M9 940 aa13.81□□□□□ -0.2
SS18-215ENST00000580642 OAFQ86UD1 273 aa13.81□□□□□ -0.2
SS18-215ENST00000580642 DEPDC4Q8N2C3 294 aa13.81□□□□□ -0.2
SS18-215ENST00000580642 MARVELD2Q8N4S9 558 aa13.81□□□□□ -0.2
SS18-215ENST00000580642 PFN4Q8NHR9 129 aa13.81□□□□□ -0.2
SS18-215ENST00000580642 TRUB1Q8WWH5 349 aaKnown RBP13.81□□□□□ -0.2
SS18-215ENST00000580642 GPA33Q99795 319 aa13.81□□□□□ -0.2
SS18-215ENST00000580642 PRRG3Q9BZD7 231 aa13.81□□□□□ -0.2
SS18-215ENST00000580642 RIBC2Q9H4K1 309 aa13.81□□□□□ -0.2
SS18-215ENST00000580642 SLC25A19Q9HC21 320 aa13.81□□□□□ -0.2
SS18-215ENST00000580642 C20orf141Q9NUB4 165 aa13.81□□□□□ -0.2
SS18-215ENST00000580642 BAIAP2Q9UQB8 552 aa13.81□□□□□ -0.2
SS18-215ENST00000580642 TRAPPC4Q9Y296 219 aa13.81□□□□□ -0.2
SS18-215ENST00000580642 HRH3Q9Y5N1 445 aa13.81□□□□□ -0.2
SS18-215ENST00000580642 MED13Q9UHV7 2174 aa13.81□□□□□ -0.2
SS18-215ENST00000580642 ACACAQ13085 2346 aa13.8□□□□□ -0.2
SS18-215ENST00000580642 HEATR5AQ86XA9 2040 aa13.8□□□□□ -0.2
SS18-215ENST00000580642 A0A0G2JMM0 328 aa13.8□□□□□ -0.2
SS18-215ENST00000580642 A0A1W2PPB8 328 aa13.8□□□□□ -0.2
SS18-215ENST00000580642 A0A1W2PRS3 328 aa13.8□□□□□ -0.2
SS18-215ENST00000580642 TMEM72A0PK05 275 aa13.8□□□□□ -0.2
SS18-215ENST00000580642 ZAR1LA6NP61 321 aa13.8□□□□□ -0.2
SS18-215ENST00000580642 KIR3DP1A8MWS1 328 aa13.8□□□□□ -0.2
SS18-215ENST00000580642 G3V3Y1 287 aa13.8□□□□□ -0.2
SS18-215ENST00000580642 DNPH1O43598 174 aa13.8□□□□□ -0.2
SS18-215ENST00000580642 MPZL2O60487 215 aa13.8□□□□□ -0.2
SS18-215ENST00000580642 MITFO75030 526 aaPredicted RBP13.8□□□□□ -0.2
SS18-215ENST00000580642 F10P00742 488 aa13.8□□□□□ -0.2
SS18-215ENST00000580642 TSPAN19P0C672 248 aa13.8□□□□□ -0.2
SS18-215ENST00000580642 ASAH2BP0C7U1 165 aa13.8□□□□□ -0.2
SS18-215ENST00000580642 FUT1P19526 365 aa13.8□□□□□ -0.2
SS18-215ENST00000580642 MAKP20794 623 aa13.8□□□□□ -0.2
SS18-215ENST00000580642 MYF6P23409 242 aa13.8□□□□□ -0.2
SS18-215ENST00000580642 GDF1P27539 372 aa13.8□□□□□ -0.2
SS18-215ENST00000580642 GPR4P46093 362 aa13.8□□□□□ -0.2
SS18-215ENST00000580642 MEOX1P50221 254 aa13.8□□□□□ -0.2
SS18-215ENST00000580642 SMSP52788 366 aa13.8□□□□□ -0.2
SS18-215ENST00000580642 NUP107P57740 925 aa13.8□□□□□ -0.2
SS18-215ENST00000580642 GPR85P60893 370 aa13.8□□□□□ -0.2
SS18-215ENST00000580642 RPS4XP62701 263 aaKnown RBP13.8□□□□□ -0.2
SS18-215ENST00000580642 LSM11P83369 360 aaKnown RBP eCLIP13.8□□□□□ -0.2
SS18-215ENST00000580642 IL1RL1Q01638 556 aa13.8□□□□□ -0.2
SS18-215ENST00000580642 FOXD4Q12950 439 aaPredicted RBP13.8□□□□□ -0.2
SS18-215ENST00000580642 TBR1Q16650 682 aa13.8□□□□□ -0.2
SS18-215ENST00000580642 ZBED5Q49AG3 693 aa13.8□□□□□ -0.2
SS18-215ENST00000580642 SYT14P1Q58G82 188 aa13.8□□□□□ -0.2
SS18-215ENST00000580642 C6orf52Q5T4I8 152 aa13.8□□□□□ -0.2
SS18-215ENST00000580642 ANKRD34AQ69YU3 496 aa13.8□□□□□ -0.2
SS18-215ENST00000580642 SMARCD3Q6STE5 483 aa13.8□□□□□ -0.2
SS18-215ENST00000580642 Q6ZS92 163 aa13.8□□□□□ -0.2
SS18-215ENST00000580642 MAMDC2Q7Z304 686 aaPredicted RBP13.8□□□□□ -0.2
SS18-215ENST00000580642 FAM109AQ8N4B1 249 aa13.8□□□□□ -0.2
SS18-215ENST00000580642 SCAIQ8N9R8 606 aa13.8□□□□□ -0.2
SS18-215ENST00000580642 KDF1Q8NAX2 398 aaPredicted RBP13.8□□□□□ -0.2
SS18-215ENST00000580642 TEX47Q8TBZ9 253 aa13.8□□□□□ -0.2
SS18-215ENST00000580642 CYGBQ8WWM9 190 aa13.8□□□□□ -0.2
SS18-215ENST00000580642 TTTY12Q9BZ98 90 aa13.8□□□□□ -0.2
SS18-215ENST00000580642 ADNPQ9H2P0 1102 aa13.8□□□□□ -0.2
SS18-215ENST00000580642 NANSQ9NR45 359 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms