RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 BOD1L1Q8NFC6 3051 aa22.69■■□□□ 1.22
SHMT1-207ENST00000580002 FAM166BA8MTA8 275 aa22.69■■□□□ 1.22
SHMT1-207ENST00000580002 SHC1P29353 583 aa22.69■■□□□ 1.22
SHMT1-207ENST00000580002 RPS5P46782 204 aaKnown RBP22.69■■□□□ 1.22
SHMT1-207ENST00000580002 RAD23AP54725 363 aa22.69■■□□□ 1.22
SHMT1-207ENST00000580002 TSPAN31Q12999 210 aa22.69■■□□□ 1.22
SHMT1-207ENST00000580002 GXYLT1Q4G148 440 aa22.69■■□□□ 1.22
SHMT1-207ENST00000580002 SLC46A3Q7Z3Q1 461 aa22.69■■□□□ 1.22
SHMT1-207ENST00000580002 OR13C2Q8NGS9 318 aa22.69■■□□□ 1.22
SHMT1-207ENST00000580002 ARL5BQ96KC2 179 aa22.69■■□□□ 1.22
SHMT1-207ENST00000580002 C12orf10Q9HB07 376 aa22.69■■□□□ 1.22
SHMT1-207ENST00000580002 DKKL1Q9UK85 242 aa22.69■■□□□ 1.22
SHMT1-207ENST00000580002 ATMQ13315 3056 aa22.69■■□□□ 1.22
SHMT1-207ENST00000580002 CD46P15529 392 aa22.68■■□□□ 1.22
SHMT1-207ENST00000580002 CHMP24386 653 aa22.68■■□□□ 1.22
SHMT1-207ENST00000580002 FXYD6P3P58550 94 aa22.68■■□□□ 1.22
SHMT1-207ENST00000580002 PMP22Q01453 160 aa22.68■■□□□ 1.22
SHMT1-207ENST00000580002 FHL1Q13642 323 aa22.68■■□□□ 1.22
SHMT1-207ENST00000580002 OR8D4Q8NGM9 314 aa22.68■■□□□ 1.22
SHMT1-207ENST00000580002 C5orf34Q96MH7 638 aa22.68■■□□□ 1.22
SHMT1-207ENST00000580002 TMEM43Q9BTV4 400 aa22.68■■□□□ 1.22
SHMT1-207ENST00000580002 GRIP2Q9C0E4 1043 aa22.68■■□□□ 1.22
SHMT1-207ENST00000580002 ORC6Q9Y5N6 252 aa22.68■■□□□ 1.22
SHMT1-207ENST00000580002 SPENQ96T58 3664 aaKnown RBP22.68■■□□□ 1.22
SHMT1-207ENST00000580002 TRAV27A0A087WT01 109 aa22.68■■□□□ 1.22
SHMT1-207ENST00000580002 H3BML4 177 aa22.68■■□□□ 1.22
SHMT1-207ENST00000580002 FPR3P25089 353 aa22.68■■□□□ 1.22
SHMT1-207ENST00000580002 IFNGR2P38484 337 aa22.68■■□□□ 1.22
SHMT1-207ENST00000580002 CAPGP40121 348 aa22.68■■□□□ 1.22
SHMT1-207ENST00000580002 CXADRP78310 365 aa22.68■■□□□ 1.22
SHMT1-207ENST00000580002 CD300LDQ6UXZ3 194 aa22.68■■□□□ 1.22
SHMT1-207ENST00000580002 TMPRSS11FQ6ZWK6 438 aa22.68■■□□□ 1.22
SHMT1-207ENST00000580002 OR51A7Q8NH64 312 aa22.68■■□□□ 1.22
SHMT1-207ENST00000580002 UBE2FQ969M7 185 aa22.68■■□□□ 1.22
SHMT1-207ENST00000580002 MRGPRX4Q96LA9 322 aa22.68■■□□□ 1.22
SHMT1-207ENST00000580002 PTDSS2Q9BVG9 487 aa22.68■■□□□ 1.22
SHMT1-207ENST00000580002 GABARAPL3Q9BY60 117 aa22.68■■□□□ 1.22
SHMT1-207ENST00000580002 TTTY12Q9BZ98 90 aa22.68■■□□□ 1.22
SHMT1-207ENST00000580002 AASSQ9UDR5 926 aa22.68■■□□□ 1.22
SHMT1-207ENST00000580002 CHRNA9Q9UGM1 479 aa22.68■■□□□ 1.22
SHMT1-207ENST00000580002 E9PQ18 207 aa22.67■■□□□ 1.22
SHMT1-207ENST00000580002 NPIPB7O75200 414 aa22.67■■□□□ 1.22
SHMT1-207ENST00000580002 TRAPPC6AO75865 159 aa22.67■■□□□ 1.22
SHMT1-207ENST00000580002 OSMP13725 252 aa22.67■■□□□ 1.22
SHMT1-207ENST00000580002 GDF1P27539 372 aa22.67■■□□□ 1.22
SHMT1-207ENST00000580002 APOBEC1P41238 236 aaKnown RBP22.67■■□□□ 1.22
SHMT1-207ENST00000580002 B3GALT5-AS1P59052 145 aa22.67■■□□□ 1.22
SHMT1-207ENST00000580002 TMEM44Q2T9K0 475 aa22.67■■□□□ 1.22
SHMT1-207ENST00000580002 RNFT1Q5M7Z0 435 aa22.67■■□□□ 1.22
SHMT1-207ENST00000580002 WIPI1Q5MNZ9 446 aaPredicted RBP22.67■■□□□ 1.22
SHMT1-207ENST00000580002 BORAQ6PGQ7 559 aa22.67■■□□□ 1.22
SHMT1-207ENST00000580002 CCDC71Q8IV32 467 aaPredicted RBP22.67■■□□□ 1.22
SHMT1-207ENST00000580002 IQCF1Q8N6M8 205 aa22.67■■□□□ 1.22
SHMT1-207ENST00000580002 FAM83FQ8NEG4 500 aaPredicted RBP22.67■■□□□ 1.22
SHMT1-207ENST00000580002 SGTBQ96EQ0 304 aa22.67■■□□□ 1.22
SHMT1-207ENST00000580002 CNBD2Q96M20 576 aa22.67■■□□□ 1.22
SHMT1-207ENST00000580002 TNFRSF13CQ96RJ3 184 aa22.67■■□□□ 1.22
SHMT1-207ENST00000580002 UBAP1Q9NZ09 502 aa22.67■■□□□ 1.22
SHMT1-207ENST00000580002 SEC14L4Q9UDX3 406 aa22.67■■□□□ 1.22
SHMT1-207ENST00000580002 RAB26Q9ULW5 256 aa22.67■■□□□ 1.22
SHMT1-207ENST00000580002 KLF13Q9Y2Y9 288 aaPredicted RBP22.67■■□□□ 1.22
SHMT1-207ENST00000580002 LOC100130705A0A1B0GUX0 176 aa22.66■■□□□ 1.22
SHMT1-207ENST00000580002 OR2M5A3KFT3 312 aa22.66■■□□□ 1.22
SHMT1-207ENST00000580002 UNC119BA6NIH7 251 aa22.66■■□□□ 1.22
SHMT1-207ENST00000580002 EFCAB9A8MZ26 197 aa22.66■■□□□ 1.22
SHMT1-207ENST00000580002 SAGP10523 405 aaPredicted RBP22.66■■□□□ 1.22
SHMT1-207ENST00000580002 HTR3AP46098 478 aa22.66■■□□□ 1.22
SHMT1-207ENST00000580002 CRISP1P54107 249 aa22.66■■□□□ 1.22
SHMT1-207ENST00000580002 TMPRSS3P57727 454 aa22.66■■□□□ 1.22
SHMT1-207ENST00000580002 RAET1LQ5VY80 246 aa22.66■■□□□ 1.22
SHMT1-207ENST00000580002 PARP8Q8N3A8 854 aa22.66■■□□□ 1.22
SHMT1-207ENST00000580002 ZCCHC14Q8WYQ9 949 aaKnown RBP22.66■■□□□ 1.22
SHMT1-207ENST00000580002 RDH12Q96NR8 316 aa22.66■■□□□ 1.22
SHMT1-207ENST00000580002 MUS81Q96NY9 551 aa22.66■■□□□ 1.22
SHMT1-207ENST00000580002 MFRPQ9BY79 579 aa22.66■■□□□ 1.22
SHMT1-207ENST00000580002 BOKQ9UMX3 212 aaPredicted RBP22.66■■□□□ 1.22
SHMT1-207ENST00000580002 M0R129 80 aa22.66■■□□□ 1.22
SHMT1-207ENST00000580002 WISP2O76076 250 aa22.66■■□□□ 1.22
SHMT1-207ENST00000580002 SRD5A2P31213 254 aa22.66■■□□□ 1.22
SHMT1-207ENST00000580002 MAGEA5P43359 124 aa22.66■■□□□ 1.22
SHMT1-207ENST00000580002 PTGES3Q15185 160 aaKnown RBP22.66■■□□□ 1.22
SHMT1-207ENST00000580002 ZNF74Q16587 644 aa22.66■■□□□ 1.22
SHMT1-207ENST00000580002 RFX4Q33E94 735 aa22.66■■□□□ 1.22
SHMT1-207ENST00000580002 GTPBP8Q8N3Z3 284 aaPredicted RBP22.66■■□□□ 1.22
SHMT1-207ENST00000580002 TMEM251Q8N6I4 163 aa22.66■■□□□ 1.22
SHMT1-207ENST00000580002 C10orf53Q8N6V4 93 aa22.66■■□□□ 1.22
SHMT1-207ENST00000580002 ZNF703Q9H7S9 590 aaPredicted RBP22.66■■□□□ 1.22
SHMT1-207ENST00000580002 ZNF337Q9Y3M9 751 aa22.66■■□□□ 1.22
SHMT1-207ENST00000580002 A0A087WV48 116 aa22.65■■□□□ 1.22
SHMT1-207ENST00000580002 A8MVM7 634 aa22.65■■□□□ 1.22
SHMT1-207ENST00000580002 H3BN98 237 aa22.65■■□□□ 1.22
SHMT1-207ENST00000580002 PTP4A3O75365 173 aa22.65■■□□□ 1.22
SHMT1-207ENST00000580002 OR7A10O76100 309 aa22.65■■□□□ 1.22
SHMT1-207ENST00000580002 HSPA13P48723 471 aa22.65■■□□□ 1.22
SHMT1-207ENST00000580002 C1orf140Q5VVS0 124 aa22.65■■□□□ 1.22
SHMT1-207ENST00000580002 THSD4Q6ZMP0 1018 aa22.65■■□□□ 1.22
SHMT1-207ENST00000580002 RASSF6Q6ZTQ3 369 aa22.65■■□□□ 1.22
SHMT1-207ENST00000580002 CHERPQ8IWX8 916 aaKnown RBP22.65■■□□□ 1.22
SHMT1-207ENST00000580002 CDK20Q8IZL9 346 aa22.65■■□□□ 1.22
SHMT1-207ENST00000580002 OR14L1PQ8NHC6 308 aa22.65■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms