RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 HDGFL3Q9Y3E1 203 aa17.39■□□□□ 0.37
SS18-209ENST00000578595 SLC22A2O15244 555 aa17.38■□□□□ 0.37
SS18-209ENST00000578595 KLK2P20151 261 aa17.38■□□□□ 0.37
SS18-209ENST00000578595 BNIP2Q12982 314 aa17.38■□□□□ 0.37
SS18-209ENST00000578595 GUSBP1Q15486 140 aa17.38■□□□□ 0.37
SS18-209ENST00000578595 DHRS4L2Q6PKH6 230 aa17.38■□□□□ 0.37
SS18-209ENST00000578595 ZNF474Q6S9Z5 364 aaPredicted RBP17.38■□□□□ 0.37
SS18-209ENST00000578595 SLC30A8Q8IWU4 369 aa17.38■□□□□ 0.37
SS18-209ENST00000578595 SMYD1Q8NB12 490 aa17.38■□□□□ 0.37
SS18-209ENST00000578595 ZNF775Q96BV0 537 aaPredicted RBP17.38■□□□□ 0.37
SS18-209ENST00000578595 GPATCH1Q9BRR8 931 aaKnown RBP17.38■□□□□ 0.37
SS18-209ENST00000578595 FANCFQ9NPI8 374 aa17.38■□□□□ 0.37
SS18-209ENST00000578595 TMEM181Q9P2C4 612 aa17.38■□□□□ 0.37
SS18-209ENST00000578595 NDRG3Q9UGV2 375 aa17.38■□□□□ 0.37
SS18-209ENST00000578595 CHST2Q9Y4C5 530 aa17.38■□□□□ 0.37
SS18-209ENST00000578595 SPG11Q96JI7 2443 aa17.38■□□□□ 0.37
SS18-209ENST00000578595 LRBAP50851 2863 aa17.37■□□□□ 0.37
SS18-209ENST00000578595 SH3D21A4FU49 640 aa17.37■□□□□ 0.37
SS18-209ENST00000578595 ELOA3DA6NLF2 546 aaPredicted RBP17.37■□□□□ 0.37
SS18-209ENST00000578595 CASKO14936 926 aa17.37■□□□□ 0.37
SS18-209ENST00000578595 ZNF208O43345 1280 aa17.37■□□□□ 0.37
SS18-209ENST00000578595 TPST1O60507 370 aa17.37■□□□□ 0.37
SS18-209ENST00000578595 PMS2P2O95744 297 aa17.37■□□□□ 0.37
SS18-209ENST00000578595 CGAP01215 116 aa17.37■□□□□ 0.37
SS18-209ENST00000578595 PCGF2P35227 344 aa17.37■□□□□ 0.37
SS18-209ENST00000578595 IDUAP35475 653 aa17.37■□□□□ 0.37
SS18-209ENST00000578595 CLK1P49759 484 aaKnown RBP17.37■□□□□ 0.37
SS18-209ENST00000578595 ELOA3BQ3SY89 546 aa17.37■□□□□ 0.37
SS18-209ENST00000578595 GLIPR1L2Q4G1C9 344 aa17.37■□□□□ 0.37
SS18-209ENST00000578595 INTS11Q5TA45 600 aaKnown RBP17.37■□□□□ 0.37
SS18-209ENST00000578595 MTDHQ86UE4 582 aaKnown RBP17.37■□□□□ 0.37
SS18-209ENST00000578595 BHLHE22Q8NFJ8 381 aaPredicted RBP17.37■□□□□ 0.37
SS18-209ENST00000578595 ELOA3Q8NG57 546 aa17.37■□□□□ 0.37
SS18-209ENST00000578595 OR8J3Q8NGG0 315 aa17.37■□□□□ 0.37
SS18-209ENST00000578595 OR52E4Q8NGH9 312 aa17.37■□□□□ 0.37
SS18-209ENST00000578595 LURAP1Q96LR2 239 aa17.37■□□□□ 0.37
SS18-209ENST00000578595 TACO1Q9BSH4 297 aaKnown RBP17.37■□□□□ 0.37
SS18-209ENST00000578595 MED18Q9BUE0 208 aa17.37■□□□□ 0.37
SS18-209ENST00000578595 TAPBPLQ9BX59 468 aa17.37■□□□□ 0.37
SS18-209ENST00000578595 ELOVL5Q9NYP7 299 aa17.37■□□□□ 0.37
SS18-209ENST00000578595 SELENONQ9NZV5 590 aa17.37■□□□□ 0.37
SS18-209ENST00000578595 ZC3H12DA2A288 527 aaKnown RBP17.36■□□□□ 0.37
SS18-209ENST00000578595 GMNCA6NCL1 334 aa17.36■□□□□ 0.37
SS18-209ENST00000578595 FXYD1O00168 92 aa17.36■□□□□ 0.37
SS18-209ENST00000578595 AIM2O14862 343 aa17.36■□□□□ 0.37
SS18-209ENST00000578595 CYTIPO60759 359 aa17.36■□□□□ 0.37
SS18-209ENST00000578595 YES1P07947 543 aa17.36■□□□□ 0.37
SS18-209ENST00000578595 COX4I1P13073 169 aa17.36■□□□□ 0.37
SS18-209ENST00000578595 SLC35A1P78382 337 aa17.36■□□□□ 0.37
SS18-209ENST00000578595 DMTNQ08495 405 aa17.36■□□□□ 0.37
SS18-209ENST00000578595 OR7A5Q15622 319 aa17.36■□□□□ 0.37
SS18-209ENST00000578595 VMACQ2NL98 169 aa17.36■□□□□ 0.37
SS18-209ENST00000578595 BEND4Q6ZU67 534 aa17.36■□□□□ 0.37
SS18-209ENST00000578595 NUFIP2Q7Z417 695 aaKnown RBP17.36■□□□□ 0.37
SS18-209ENST00000578595 NET1Q7Z628 596 aaPredicted RBP17.36■□□□□ 0.37
SS18-209ENST00000578595 PATL1Q86TB9 770 aaKnown RBP17.36■□□□□ 0.37
SS18-209ENST00000578595 RANBP3LQ86VV4 465 aaPredicted RBP17.36■□□□□ 0.37
SS18-209ENST00000578595 RP9Q8TA86 221 aaKnown RBP17.36■□□□□ 0.37
SS18-209ENST00000578595 PIGXQ8TBF5 258 aa17.36■□□□□ 0.37
SS18-209ENST00000578595 C3orf49Q96BT1 292 aa17.36■□□□□ 0.37
SS18-209ENST00000578595 ZC3HAV1LQ96H79 300 aaKnown RBP17.36■□□□□ 0.37
SS18-209ENST00000578595 ZNF300Q96RE9 604 aaPredicted RBP17.36■□□□□ 0.37
SS18-209ENST00000578595 PSD2Q9BQI7 771 aa17.36■□□□□ 0.37
SS18-209ENST00000578595 NAA11Q9BSU3 229 aaPredicted RBP17.36■□□□□ 0.37
SS18-209ENST00000578595 ADAM19Q9H013 955 aa17.36■□□□□ 0.37
SS18-209ENST00000578595 PLSCR4Q9NRQ2 329 aa17.36■□□□□ 0.37
SS18-209ENST00000578595 EMC3Q9P0I2 261 aa17.36■□□□□ 0.37
SS18-209ENST00000578595 C16orf97H3BN30 126 aa17.35■□□□□ 0.37
SS18-209ENST00000578595 M0QX08 132 aa17.35■□□□□ 0.37
SS18-209ENST00000578595 NPPAP01160 153 aa17.35■□□□□ 0.37
SS18-209ENST00000578595 EPXP11678 715 aa17.35■□□□□ 0.37
SS18-209ENST00000578595 FPR1P21462 350 aa17.35■□□□□ 0.37
SS18-209ENST00000578595 DRD4P21917 467 aa17.35■□□□□ 0.37
SS18-209ENST00000578595 GTF2E2P29084 291 aaKnown RBP17.35■□□□□ 0.37
SS18-209ENST00000578595 MAP2K6P52564 334 aa17.35■□□□□ 0.37
SS18-209ENST00000578595 KRTAP10-9P60411 292 aa17.35■□□□□ 0.37
SS18-209ENST00000578595 ANKRD34AQ69YU3 496 aa17.35■□□□□ 0.37
SS18-209ENST00000578595 ZC3HAV1Q7Z2W4 902 aaKnown RBP17.35■□□□□ 0.37
SS18-209ENST00000578595 COMTD1Q86VU5 262 aa17.35■□□□□ 0.37
SS18-209ENST00000578595 ZNF100Q8IYN0 542 aa17.35■□□□□ 0.37
SS18-209ENST00000578595 VANGL1Q8TAA9 524 aaPredicted RBP17.35■□□□□ 0.37
SS18-209ENST00000578595 SLC35B4Q969S0 331 aa17.35■□□□□ 0.37
SS18-209ENST00000578595 POLDIP3Q9BY77 421 aaKnown RBP17.35■□□□□ 0.37
SS18-209ENST00000578595 ADPRHL2Q9NX46 363 aa17.35■□□□□ 0.37
SS18-209ENST00000578595 C6orf203Q9P0P8 240 aaPredicted RBP17.35■□□□□ 0.37
SS18-209ENST00000578595 TESQ9UGI8 421 aaKnown RBP17.35■□□□□ 0.37
SS18-209ENST00000578595 TACC2O95359 2948 aa17.34■□□□□ 0.37
SS18-209ENST00000578595 A6NNC1 897 aa17.34■□□□□ 0.37
SS18-209ENST00000578595 A8MVM7 634 aa17.34■□□□□ 0.37
SS18-209ENST00000578595 M0R3H8 397 aa17.34■□□□□ 0.37
SS18-209ENST00000578595 MFN2O95140 757 aa17.34■□□□□ 0.37
SS18-209ENST00000578595 AHSA1O95433 338 aa17.34■□□□□ 0.37
SS18-209ENST00000578595 GPIP06744 558 aa17.34■□□□□ 0.37
SS18-209ENST00000578595 IMPDH2P12268 514 aa17.34■□□□□ 0.37
SS18-209ENST00000578595 UGT2B10P36537 528 aa17.34■□□□□ 0.37
SS18-209ENST00000578595 NUDT2P50583 147 aa17.34■□□□□ 0.37
SS18-209ENST00000578595 PCBP3P57721 371 aaKnown RBP17.34■□□□□ 0.37
SS18-209ENST00000578595 CEACAM7Q14002 265 aa17.34■□□□□ 0.37
SS18-209ENST00000578595 POU4F3Q15319 338 aa17.34■□□□□ 0.37
SS18-209ENST00000578595 ALG10BQ5I7T1 473 aa17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms