RNA–Protein interactions for RNA: ENST00000574501.1

SMG6-215, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

Gene SMG6, Length 2,419 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-215ENST00000574501 RASL12Q9NYN1 266 aa13.31□□□□□ -0.28
SMG6-215ENST00000574501 EDARQ9UNE0 448 aa13.31□□□□□ -0.28
SMG6-215ENST00000574501 FOXJ3Q9UPW0 622 aa13.31□□□□□ -0.28
SMG6-215ENST00000574501 MYOFQ9NZM1 2061 aa13.31□□□□□ -0.28
SMG6-215ENST00000574501 MTCL1Q9Y4B5 1905 aaKnown RBP13.3□□□□□ -0.28
SMG6-215ENST00000574501 TRBV2A0A0J9YWF9 115 aa13.3□□□□□ -0.28
SMG6-215ENST00000574501 TMEM272A0A1B0GTI8 110 aa13.3□□□□□ -0.28
SMG6-215ENST00000574501 CNR1P21554 472 aa13.3□□□□□ -0.28
SMG6-215ENST00000574501 DPP4P27487 766 aa13.3□□□□□ -0.28
SMG6-215ENST00000574501 PSMB10P40306 273 aa13.3□□□□□ -0.28
SMG6-215ENST00000574501 OVCH1Q7RTY7 1134 aa13.3□□□□□ -0.28
SMG6-215ENST00000574501 OR51L1Q8NGJ5 315 aa13.3□□□□□ -0.28
SMG6-215ENST00000574501 NANPQ8TBE9 248 aa13.3□□□□□ -0.28
SMG6-215ENST00000574501 SMIM19Q96E16 107 aa13.3□□□□□ -0.28
SMG6-215ENST00000574501 PELI1Q96FA3 418 aa13.3□□□□□ -0.28
SMG6-215ENST00000574501 CD180Q99467 661 aa13.3□□□□□ -0.28
SMG6-215ENST00000574501 WDR13Q9H1Z4 485 aa13.3□□□□□ -0.28
SMG6-215ENST00000574501 KLHL28Q9NXS3 571 aa13.3□□□□□ -0.28
SMG6-215ENST00000574501 ZNF230Q9UIE0 474 aaPredicted RBP13.3□□□□□ -0.28
SMG6-215ENST00000574501 A0A1B0GW55 424 aa13.3□□□□□ -0.28
SMG6-215ENST00000574501 IFITM5A6NNB3 132 aa13.3□□□□□ -0.28
SMG6-215ENST00000574501 SMAD9O15198 467 aaKnown RBP13.3□□□□□ -0.28
SMG6-215ENST00000574501 NDUFS4O43181 175 aa13.3□□□□□ -0.28
SMG6-215ENST00000574501 DUX4L2P0CJ85 424 aa13.3□□□□□ -0.28
SMG6-215ENST00000574501 DUX4L3P0CJ86 424 aa13.3□□□□□ -0.28
SMG6-215ENST00000574501 DUX4L4P0CJ87 422 aa13.3□□□□□ -0.28
SMG6-215ENST00000574501 DUX4L5P0CJ88 424 aa13.3□□□□□ -0.28
SMG6-215ENST00000574501 DUX4L6P0CJ89 424 aa13.3□□□□□ -0.28
SMG6-215ENST00000574501 DUX4L7P0CJ90 424 aa13.3□□□□□ -0.28
SMG6-215ENST00000574501 TMIGD3P0DMS9 266 aaPredicted RBP13.3□□□□□ -0.28
SMG6-215ENST00000574501 NTSP30990 170 aa13.3□□□□□ -0.28
SMG6-215ENST00000574501 PDX1P52945 283 aa13.3□□□□□ -0.28
SMG6-215ENST00000574501 UBE2IP63279 158 aaKnown RBP13.3□□□□□ -0.28
SMG6-215ENST00000574501 CRMP1Q14194 572 aa13.3□□□□□ -0.28
SMG6-215ENST00000574501 BEX5Q5H9J7 111 aa13.3□□□□□ -0.28
SMG6-215ENST00000574501 C9orf64Q5T6V5 341 aa13.3□□□□□ -0.28
SMG6-215ENST00000574501 WDR88Q6ZMY6 472 aa13.3□□□□□ -0.28
SMG6-215ENST00000574501 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.3□□□□□ -0.28
SMG6-215ENST00000574501 S100A16Q96FQ6 103 aaKnown RBP13.3□□□□□ -0.28
SMG6-215ENST00000574501 C10orf90Q96M02 699 aa13.3□□□□□ -0.28
SMG6-215ENST00000574501 HS6ST2Q96MM7 605 aa13.3□□□□□ -0.28
SMG6-215ENST00000574501 ZNF75AQ96N20 296 aa13.3□□□□□ -0.28
SMG6-215ENST00000574501 TMEM185BQ9H7F4 350 aa13.3□□□□□ -0.28
SMG6-215ENST00000574501 DUX4Q9UBX2 424 aa13.3□□□□□ -0.28
SMG6-215ENST00000574501 ASF1AQ9Y294 204 aa13.3□□□□□ -0.28
SMG6-215ENST00000574501 COL4A3Q01955 1670 aa13.3□□□□□ -0.28
SMG6-215ENST00000574501 PDE4DIPQ5VU43 2346 aa13.29□□□□□ -0.28
SMG6-215ENST00000574501 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.29□□□□□ -0.28
SMG6-215ENST00000574501 FAM86C2PA6NEL3 165 aa13.29□□□□□ -0.28
SMG6-215ENST00000574501 ZNF749O43361 778 aa13.29□□□□□ -0.28
SMG6-215ENST00000574501 LEFTY1O75610 366 aa13.29□□□□□ -0.28
SMG6-215ENST00000574501 F12P00748 615 aaPredicted RBP13.29□□□□□ -0.28
SMG6-215ENST00000574501 GALTP07902 379 aa13.29□□□□□ -0.28
SMG6-215ENST00000574501 SPP1P10451 314 aa13.29□□□□□ -0.28
SMG6-215ENST00000574501 CKBP12277 381 aa13.29□□□□□ -0.28
SMG6-215ENST00000574501 RPA2P15927 270 aa13.29□□□□□ -0.28
SMG6-215ENST00000574501 LUMP51884 338 aaPredicted RBP13.29□□□□□ -0.28
SMG6-215ENST00000574501 PPP2CBP62714 309 aa13.29□□□□□ -0.28
SMG6-215ENST00000574501 PPP2CAP67775 309 aa13.29□□□□□ -0.28
SMG6-215ENST00000574501 MLC1Q15049 377 aa13.29□□□□□ -0.28
SMG6-215ENST00000574501 CDK5R1Q15078 307 aa13.29□□□□□ -0.28
SMG6-215ENST00000574501 NUDT18Q6ZVK8 323 aa13.29□□□□□ -0.28
SMG6-215ENST00000574501 ZNF546Q86UE3 836 aa13.29□□□□□ -0.28
SMG6-215ENST00000574501 C17orf64Q86WR6 236 aa13.29□□□□□ -0.28
SMG6-215ENST00000574501 OR13C2Q8NGS9 318 aa13.29□□□□□ -0.28
SMG6-215ENST00000574501 ZMYND19Q96E35 227 aaPredicted RBP13.29□□□□□ -0.28
SMG6-215ENST00000574501 CASD1Q96PB1 797 aa13.29□□□□□ -0.28
SMG6-215ENST00000574501 UTP23Q9BRU9 249 aaKnown RBP13.29□□□□□ -0.28
SMG6-215ENST00000574501 CHST6Q9GZX3 395 aa13.29□□□□□ -0.28
SMG6-215ENST00000574501 SLC22A11Q9NSA0 550 aa13.29□□□□□ -0.28
SMG6-215ENST00000574501 HS3ST2Q9Y278 367 aa13.29□□□□□ -0.28
SMG6-215ENST00000574501 YIPF1Q9Y548 306 aa13.29□□□□□ -0.28
SMG6-215ENST00000574501 TRAV27A0A087WT01 109 aa13.29□□□□□ -0.28
SMG6-215ENST00000574501 PQLC2LA1A4F0 135 aa13.29□□□□□ -0.28
SMG6-215ENST00000574501 OR6C68A6NDL8 312 aa13.29□□□□□ -0.28
SMG6-215ENST00000574501 ANKRD61A6NGH8 418 aa13.29□□□□□ -0.28
SMG6-215ENST00000574501 PIN1P1O15428 100 aa13.29□□□□□ -0.28
SMG6-215ENST00000574501 OR1F1O43749 312 aa13.29□□□□□ -0.28
SMG6-215ENST00000574501 EIF4E2O60573 245 aaKnown RBP13.29□□□□□ -0.28
SMG6-215ENST00000574501 LATS1O95835 1130 aa13.29□□□□□ -0.28
SMG6-215ENST00000574501 EDNRAP25101 427 aa13.29□□□□□ -0.28
SMG6-215ENST00000574501 NAA10P41227 235 aaPredicted RBP13.29□□□□□ -0.28
SMG6-215ENST00000574501 SSR2P43308 183 aa13.29□□□□□ -0.28
SMG6-215ENST00000574501 STX4Q12846 297 aa13.29□□□□□ -0.28
SMG6-215ENST00000574501 SWI5Q1ZZU3 235 aa13.29□□□□□ -0.28
SMG6-215ENST00000574501 ZNF658BQ4V348 819 aaPredicted RBP13.29□□□□□ -0.28
SMG6-215ENST00000574501 ARSIQ5FYB1 569 aa13.29□□□□□ -0.28
SMG6-215ENST00000574501 MANEAQ5SRI9 462 aa13.29□□□□□ -0.28
SMG6-215ENST00000574501 SLC8B1Q6J4K2 584 aa13.29□□□□□ -0.28
SMG6-215ENST00000574501 MOB3CQ70IA8 216 aa13.29□□□□□ -0.28
SMG6-215ENST00000574501 HTR3DQ70Z44 454 aa13.29□□□□□ -0.28
SMG6-215ENST00000574501 LNX2Q8N448 690 aa13.29□□□□□ -0.28
SMG6-215ENST00000574501 ZNF784Q8NCA9 323 aaPredicted RBP13.29□□□□□ -0.28
SMG6-215ENST00000574501 OR2A12Q8NGT7 310 aa13.29□□□□□ -0.28
SMG6-215ENST00000574501 OR51A7Q8NH64 312 aa13.29□□□□□ -0.28
SMG6-215ENST00000574501 SETD7Q8WTS6 366 aaKnown RBP13.29□□□□□ -0.28
SMG6-215ENST00000574501 RHBGQ9H310 441 aa13.29□□□□□ -0.28
SMG6-215ENST00000574501 ZNF334Q9HCZ1 680 aaPredicted RBP13.29□□□□□ -0.28
SMG6-215ENST00000574501 CMC2Q9NRP2 79 aa13.29□□□□□ -0.28
SMG6-215ENST00000574501 CXXC1Q9P0U4 656 aaPredicted RBP13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms