RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 OR11A1Q9GZK7 315 aa18.51■□□□□ 0.55
VPS53-216ENST00000574029 TRAPPC4Q9Y296 219 aa18.51■□□□□ 0.55
VPS53-216ENST00000574029 PRSS51A0A1B0GVH4 220 aa18.5■□□□□ 0.55
VPS53-216ENST00000574029 H7C417 338 aa18.5■□□□□ 0.55
VPS53-216ENST00000574029 M0R1B8 84 aa18.5■□□□□ 0.55
VPS53-216ENST00000574029 PDLIM1O00151 329 aa18.5■□□□□ 0.55
VPS53-216ENST00000574029 ETV4P43268 484 aa18.5■□□□□ 0.55
VPS53-216ENST00000574029 MAGEA8P43361 318 aa18.5■□□□□ 0.55
VPS53-216ENST00000574029 FABP6P51161 128 aa18.5■□□□□ 0.55
VPS53-216ENST00000574029 PHC1P78364 1004 aa18.5■□□□□ 0.55
VPS53-216ENST00000574029 VLDLRP98155 873 aa18.5■□□□□ 0.55
VPS53-216ENST00000574029 RAB35Q15286 201 aa18.5■□□□□ 0.55
VPS53-216ENST00000574029 ZNF544Q6NX49 715 aa18.5■□□□□ 0.55
VPS53-216ENST00000574029 TNFAIP8L2Q6P589 184 aaPredicted RBP18.5■□□□□ 0.55
VPS53-216ENST00000574029 ANKRD46Q86W74 232 aa18.5■□□□□ 0.55
VPS53-216ENST00000574029 DEPDC4Q8N2C3 294 aa18.5■□□□□ 0.55
VPS53-216ENST00000574029 TMEM158Q8WZ71 300 aa18.5■□□□□ 0.55
VPS53-216ENST00000574029 INPP5KQ9BT40 448 aa18.5■□□□□ 0.55
VPS53-216ENST00000574029 AKTIPQ9H8T0 292 aa18.5■□□□□ 0.55
VPS53-216ENST00000574029 ST6GALNAC1Q9NSC7 600 aaPredicted RBP18.5■□□□□ 0.55
VPS53-216ENST00000574029 TMEM181Q9P2C4 612 aa18.5■□□□□ 0.55
VPS53-216ENST00000574029 MXRA5Q9NR99 2828 aa18.5■□□□□ 0.55
VPS53-216ENST00000574029 PRAMEF27A3QJZ7 478 aa18.49■□□□□ 0.55
VPS53-216ENST00000574029 CPSF4O95639 269 aaKnown RBP18.49■□□□□ 0.55
VPS53-216ENST00000574029 FAM157CP0CG43 387 aa18.49■□□□□ 0.55
VPS53-216ENST00000574029 SLC25A16P16260 332 aa18.49■□□□□ 0.55
VPS53-216ENST00000574029 OR2B6P58173 313 aa18.49■□□□□ 0.55
VPS53-216ENST00000574029 KCNJ10P78508 379 aa18.49■□□□□ 0.55
VPS53-216ENST00000574029 ANXA8L1Q5VT79 327 aa18.49■□□□□ 0.55
VPS53-216ENST00000574029 ARFGAP2Q8N6H7 521 aa18.49■□□□□ 0.55
VPS53-216ENST00000574029 ZNF525Q8N782 197 aa18.49■□□□□ 0.55
VPS53-216ENST00000574029 WDR31Q8NA23 367 aa18.49■□□□□ 0.55
VPS53-216ENST00000574029 OR52E4Q8NGH9 312 aa18.49■□□□□ 0.55
VPS53-216ENST00000574029 HTRA1Q92743 480 aa18.49■□□□□ 0.55
VPS53-216ENST00000574029 NEURL3Q96EH8 262 aa18.49■□□□□ 0.55
VPS53-216ENST00000574029 DPY30Q9C005 99 aa18.49■□□□□ 0.55
VPS53-216ENST00000574029 CLDN24A6NM45 220 aa18.48■□□□□ 0.55
VPS53-216ENST00000574029 ITM2AO43736 263 aa18.48■□□□□ 0.55
VPS53-216ENST00000574029 HTR3AP46098 478 aa18.48■□□□□ 0.55
VPS53-216ENST00000574029 IDH2P48735 452 aaKnown RBP18.48■□□□□ 0.55
VPS53-216ENST00000574029 KHKP50053 298 aa18.48■□□□□ 0.55
VPS53-216ENST00000574029 PDCD2Q16342 344 aaPredicted RBP18.48■□□□□ 0.55
VPS53-216ENST00000574029 HMGN2P46Q86SG4 172 aa18.48■□□□□ 0.55
VPS53-216ENST00000574029 NUDCD3Q8IVD9 361 aa18.48■□□□□ 0.55
VPS53-216ENST00000574029 C17orf78Q8N4C9 275 aa18.48■□□□□ 0.55
VPS53-216ENST00000574029 ZNF781Q8N8C0 355 aa18.48■□□□□ 0.55
VPS53-216ENST00000574029 C1orf162Q8NEQ5 155 aaPredicted RBP18.48■□□□□ 0.55
VPS53-216ENST00000574029 VPS37AQ8NEZ2 397 aa18.48■□□□□ 0.55
VPS53-216ENST00000574029 TESCQ96BS2 214 aa18.48■□□□□ 0.55
VPS53-216ENST00000574029 PPP1R36Q96LQ0 422 aa18.48■□□□□ 0.55
VPS53-216ENST00000574029 C1QTNF6Q9BXI9 259 aa18.48■□□□□ 0.55
VPS53-216ENST00000574029 PARPBPQ9NWS1 579 aa18.48■□□□□ 0.55
VPS53-216ENST00000574029 TMEM160Q9NX00 188 aa18.48■□□□□ 0.55
VPS53-216ENST00000574029 DCTN4Q9UJW0 460 aa18.48■□□□□ 0.55
VPS53-216ENST00000574029 CDC42EP3Q9UKI2 254 aa18.48■□□□□ 0.55
VPS53-216ENST00000574029 FLVCR1Q9Y5Y0 555 aa18.48■□□□□ 0.55
VPS53-216ENST00000574029 TMED7-TICAM2A0A0A6YYA0 188 aa18.47■□□□□ 0.55
VPS53-216ENST00000574029 AP3D1O14617 1153 aa18.47■□□□□ 0.55
VPS53-216ENST00000574029 ZNF208O43345 1280 aa18.47■□□□□ 0.55
VPS53-216ENST00000574029 EIF1BO60739 113 aaKnown RBP18.47■□□□□ 0.55
VPS53-216ENST00000574029 CCNA2P20248 432 aa18.47■□□□□ 0.55
VPS53-216ENST00000574029 SLC35A1P78382 337 aa18.47■□□□□ 0.55
VPS53-216ENST00000574029 CASP8Q14790 479 aa18.47■□□□□ 0.55
VPS53-216ENST00000574029 GPAT3Q53EU6 434 aa18.47■□□□□ 0.55
VPS53-216ENST00000574029 C1QTNF12Q5T7M4 302 aa18.47■□□□□ 0.55
VPS53-216ENST00000574029 CASP12Q6UXS9 341 aa18.47■□□□□ 0.55
VPS53-216ENST00000574029 C10orf105Q8TEF2 133 aa18.47■□□□□ 0.55
VPS53-216ENST00000574029 FAM168AQ92567 244 aa18.47■□□□□ 0.55
VPS53-216ENST00000574029 CNOT9Q92600 299 aaKnown RBP18.47■□□□□ 0.55
VPS53-216ENST00000574029 SLC17A5Q9NRA2 495 aa18.47■□□□□ 0.55
VPS53-216ENST00000574029 SLC7A10Q9NS82 523 aa18.47■□□□□ 0.55
VPS53-216ENST00000574029 MARCOQ9UEW3 520 aaPredicted RBP18.47■□□□□ 0.55
VPS53-216ENST00000574029 SLC9A8Q9Y2E8 581 aa18.47■□□□□ 0.55
VPS53-216ENST00000574029 AMDHD2Q9Y303 409 aa18.47■□□□□ 0.55
VPS53-216ENST00000574029 TMED7Q9Y3B3 224 aa18.47■□□□□ 0.55
VPS53-216ENST00000574029 PLCE1Q9P212 2302 aa18.47■□□□□ 0.55
VPS53-216ENST00000574029 TMEM72A0PK05 275 aa18.46■□□□□ 0.55
VPS53-216ENST00000574029 HMGN4O00479 90 aa18.46■□□□□ 0.55
VPS53-216ENST00000574029 IMPDH2P12268 514 aa18.46■□□□□ 0.55
VPS53-216ENST00000574029 POLR2HP52434 150 aaKnown RBP18.46■□□□□ 0.55
VPS53-216ENST00000574029 EFNA4P52798 201 aa18.46■□□□□ 0.55
VPS53-216ENST00000574029 HPCAP84074 193 aa18.46■□□□□ 0.55
VPS53-216ENST00000574029 SLC25A3Q00325 362 aa18.46■□□□□ 0.55
VPS53-216ENST00000574029 CMIPQ8IY22 773 aa18.46■□□□□ 0.55
VPS53-216ENST00000574029 PROX1Q92786 737 aa18.46■□□□□ 0.55
VPS53-216ENST00000574029 PMM1Q92871 262 aa18.46■□□□□ 0.55
VPS53-216ENST00000574029 DDIT4LQ96D03 193 aa18.46■□□□□ 0.55
VPS53-216ENST00000574029 KCNK17Q96T54 332 aa18.46■□□□□ 0.55
VPS53-216ENST00000574029 SLC35A5Q9BS91 424 aa18.46■□□□□ 0.55
VPS53-216ENST00000574029 NAA11Q9BSU3 229 aaPredicted RBP18.46■□□□□ 0.55
VPS53-216ENST00000574029 CENPHQ9H3R5 247 aa18.46■□□□□ 0.55
VPS53-216ENST00000574029 MANSC1Q9H8J5 431 aa18.46■□□□□ 0.55
VPS53-216ENST00000574029 FKRPQ9H9S5 495 aa18.46■□□□□ 0.55
VPS53-216ENST00000574029 UPB1Q9UBR1 384 aa18.46■□□□□ 0.55
VPS53-216ENST00000574029 OSGIN1Q9UJX0 560 aa18.46■□□□□ 0.55
VPS53-216ENST00000574029 ATP23Q9Y6H3 246 aa18.46■□□□□ 0.55
VPS53-216ENST00000574029 ALPK2Q86TB3 2170 aa18.46■□□□□ 0.55
VPS53-216ENST00000574029 FAAHO00519 579 aa18.45■□□□□ 0.54
VPS53-216ENST00000574029 TM9SF1O15321 606 aa18.45■□□□□ 0.54
VPS53-216ENST00000574029 PHF1O43189 567 aaPredicted RBP18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms