RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 IFT52Q9Y366 437 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 HDGFL3Q9Y3E1 203 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 TESMINQ9Y4I5 508 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 PCDHB14Q9Y5E9 798 aa7.23□□□□□ -1.25
VPS53-214ENST00000572607 ACANP16112 2415 aa7.22□□□□□ -1.25
VPS53-214ENST00000572607 PRRC2AP48634 2157 aaKnown RBP7.22□□□□□ -1.25
VPS53-214ENST00000572607 MAP1AP78559 2803 aaPredicted RBP7.22□□□□□ -1.25
VPS53-214ENST00000572607 IGHV3-15A0A0B4J1V0 119 aa7.22□□□□□ -1.25
VPS53-214ENST00000572607 CDHR4A6H8M9 788 aa7.22□□□□□ -1.25
VPS53-214ENST00000572607 ADARB2-AS1A8MUL3 147 aa7.22□□□□□ -1.25
VPS53-214ENST00000572607 FAAHO00519 579 aa7.22□□□□□ -1.25
VPS53-214ENST00000572607 DNPH1O43598 174 aa7.22□□□□□ -1.25
VPS53-214ENST00000572607 EFNA2O43921 213 aa7.22□□□□□ -1.25
VPS53-214ENST00000572607 FESP07332 822 aa7.22□□□□□ -1.25
VPS53-214ENST00000572607 YES1P07947 543 aa7.22□□□□□ -1.25
VPS53-214ENST00000572607 RPS4Y1P22090 263 aaKnown RBP7.22□□□□□ -1.25
VPS53-214ENST00000572607 DNAJA1P31689 397 aaKnown RBP7.22□□□□□ -1.25
VPS53-214ENST00000572607 SLC1A3P43003 542 aa7.22□□□□□ -1.25
VPS53-214ENST00000572607 DIO1P49895 249 aa7.22□□□□□ -1.25
VPS53-214ENST00000572607 MVDP53602 400 aa7.22□□□□□ -1.25
VPS53-214ENST00000572607 RASGEF1BQ0VAM2 473 aa7.22□□□□□ -1.25
VPS53-214ENST00000572607 POU4F3Q15319 338 aa7.22□□□□□ -1.25
VPS53-214ENST00000572607 RGNQ15493 299 aa7.22□□□□□ -1.25
VPS53-214ENST00000572607 ZNF311Q5JNZ3 666 aa7.22□□□□□ -1.25
VPS53-214ENST00000572607 RPS26P11Q5JNZ5 115 aaPredicted RBP7.22□□□□□ -1.25
VPS53-214ENST00000572607 LRIF1Q5T3J3 769 aa7.22□□□□□ -1.25
VPS53-214ENST00000572607 RNF220Q5VTB9 566 aa7.22□□□□□ -1.25
VPS53-214ENST00000572607 ZNF836Q6ZNA1 936 aa7.22□□□□□ -1.25
VPS53-214ENST00000572607 SYT9Q86SS6 491 aa7.22□□□□□ -1.25
VPS53-214ENST00000572607 VRK2Q86Y07 508 aa7.22□□□□□ -1.25
VPS53-214ENST00000572607 CDC20BQ86Y33 519 aa7.22□□□□□ -1.25
VPS53-214ENST00000572607 KRT73Q86Y46 540 aa7.22□□□□□ -1.25
VPS53-214ENST00000572607 FUNDC1Q8IVP5 155 aa7.22□□□□□ -1.25
VPS53-214ENST00000572607 TUSC5Q8IXB3 177 aa7.22□□□□□ -1.25
VPS53-214ENST00000572607 CADM2Q8N3J6 435 aa7.22□□□□□ -1.25
VPS53-214ENST00000572607 ZC3HAV1LQ96H79 300 aaKnown RBP7.22□□□□□ -1.25
VPS53-214ENST00000572607 NAA11Q9BSU3 229 aaPredicted RBP7.22□□□□□ -1.25
VPS53-214ENST00000572607 CCDC106Q9BWC9 280 aa7.22□□□□□ -1.25
VPS53-214ENST00000572607 SPATA9Q9BWV2 254 aa7.22□□□□□ -1.25
VPS53-214ENST00000572607 A4GALTQ9NPC4 353 aa7.22□□□□□ -1.25
VPS53-214ENST00000572607 SLC13A4Q9UKG4 626 aa7.22□□□□□ -1.25
VPS53-214ENST00000572607 ZNF443Q9Y2A4 671 aaPredicted RBP7.22□□□□□ -1.25
VPS53-214ENST00000572607 GPR52Q9Y2T5 361 aa7.22□□□□□ -1.25
VPS53-214ENST00000572607 NDUFAF1Q9Y375 327 aa7.22□□□□□ -1.25
VPS53-214ENST00000572607 FREM3P0C091 2139 aa7.22□□□□□ -1.25
VPS53-214ENST00000572607 DSPPQ9NZW4 1301 aa7.22□□□□□ -1.25
VPS53-214ENST00000572607 KIAA1549Q9HCM3 1950 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 INTS1Q8N201 2190 aaKnown RBP7.21□□□□□ -1.26
VPS53-214ENST00000572607 MED12Q93074 2177 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 TMED7-TICAM2A0A0A6YYA0 188 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 FAM221AA4D161 298 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 PRORSD1PA6NEY8 169 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 AP3D1O14617 1153 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 GPR171O14626 319 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 ZNF208O43345 1280 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 CYTIPO60759 359 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 BCAS1O75363 584 aaPredicted RBP7.21□□□□□ -1.26
VPS53-214ENST00000572607 PMS2P2O95744 297 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 HRGP04196 525 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 VIMP08670 466 aaKnown RBP7.21□□□□□ -1.26
VPS53-214ENST00000572607 SLC6A2P23975 617 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 IL32P24001 234 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 CXCR1P25024 350 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 TACR3P29371 465 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 ART1P52961 327 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 ARFIP2P53365 341 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 OR2B6P58173 313 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 SLC35A1P78382 337 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 CDK6Q00534 326 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 EPS8Q12929 822 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 KEAP1Q14145 624 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 PAGE3Q5JUK9 113 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 METTL21CQ5VZV1 264 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 WBP2NLQ6ICG8 309 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 GALNT5Q7Z7M9 940 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 DHDDSQ86SQ9 333 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 MTDHQ86UE4 582 aaKnown RBP7.21□□□□□ -1.26
VPS53-214ENST00000572607 STEAP2Q8NFT2 490 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 NFKBIDQ8NI38 313 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 PIGXQ8TBF5 258 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 TSPEARQ8WU66 669 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 MAL2Q969L2 176 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 PIK3IP1Q96FE7 263 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 WFIKKN1Q96NZ8 548 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 PSD2Q9BQI7 771 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 TMEM120AQ9BXJ8 343 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 HDHD5Q9BXW7 423 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 ACTR6Q9GZN1 396 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 OR10A4Q9H209 315 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 BCO1Q9HAY6 547 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 BCL2L10Q9HD36 194 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 MED4Q9NPJ6 270 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 RLIMQ9NVW2 624 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 TMEM181Q9P2C4 612 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 RPS6KB2Q9UBS0 482 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 ST6GALNAC2Q9UJ37 374 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 ANGPT4Q9Y264 503 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 TMED7Q9Y3B3 224 aa7.21□□□□□ -1.26
VPS53-214ENST00000572607 HRNRQ86YZ3 2850 aaPredicted RBP7.21□□□□□ -1.26
VPS53-214ENST00000572607 TMEM72A0PK05 275 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms