RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 ZNF304Q9HCX3 659 aa18.55■□□□□ 0.56
CLN3-230ENST00000568076 PPM1BO75688 479 aa18.55■□□□□ 0.56
CLN3-230ENST00000568076 OR7A10O76100 309 aa18.55■□□□□ 0.56
CLN3-230ENST00000568076 HPGDP15428 266 aa18.55■□□□□ 0.56
CLN3-230ENST00000568076 FBLP22087 321 aaKnown RBP18.55■□□□□ 0.56
CLN3-230ENST00000568076 GALP22466 123 aa18.55■□□□□ 0.56
CLN3-230ENST00000568076 ELAVL1Q15717 326 aaKnown RBP18.55■□□□□ 0.56
CLN3-230ENST00000568076 WDR45BQ5MNZ6 344 aa18.55■□□□□ 0.56
CLN3-230ENST00000568076 WBP2NLQ6ICG8 309 aa18.55■□□□□ 0.56
CLN3-230ENST00000568076 ATG4DQ86TL0 474 aaPredicted RBP18.55■□□□□ 0.56
CLN3-230ENST00000568076 SLITRK4Q8IW52 837 aa18.55■□□□□ 0.56
CLN3-230ENST00000568076 C9orf40Q8IXQ3 194 aa18.55■□□□□ 0.56
CLN3-230ENST00000568076 PRSS58Q8IYP2 241 aa18.55■□□□□ 0.56
CLN3-230ENST00000568076 GPR135Q8IZ08 494 aa18.55■□□□□ 0.56
CLN3-230ENST00000568076 RFLNBQ8N5W9 214 aa18.55■□□□□ 0.56
CLN3-230ENST00000568076 FAM98AQ8NCA5 519 aaKnown RBP18.55■□□□□ 0.56
CLN3-230ENST00000568076 OR5W2Q8NH69 310 aa18.55■□□□□ 0.56
CLN3-230ENST00000568076 ADOQ96SZ5 270 aa18.55■□□□□ 0.56
CLN3-230ENST00000568076 TRIM36Q9NQ86 728 aa18.55■□□□□ 0.56
CLN3-230ENST00000568076 ZNF337Q9Y3M9 751 aa18.55■□□□□ 0.56
CLN3-230ENST00000568076 SCDO00767 359 aa18.54■□□□□ 0.56
CLN3-230ENST00000568076 IMPA2O14732 288 aa18.54■□□□□ 0.56
CLN3-230ENST00000568076 TFP02787 698 aa18.54■□□□□ 0.56
CLN3-230ENST00000568076 MT-ND5P03915 603 aa18.54■□□□□ 0.56
CLN3-230ENST00000568076 CCR4P51679 360 aa18.54■□□□□ 0.56
CLN3-230ENST00000568076 OR12D2P58182 307 aa18.54■□□□□ 0.56
CLN3-230ENST00000568076 RPS4XP62701 263 aaKnown RBP18.54■□□□□ 0.56
CLN3-230ENST00000568076 E2F1Q01094 437 aa18.54■□□□□ 0.56
CLN3-230ENST00000568076 ZP2Q05996 745 aa18.54■□□□□ 0.56
CLN3-230ENST00000568076 DDI2Q5TDH0 399 aa18.54■□□□□ 0.56
CLN3-230ENST00000568076 PRSS42Q7Z5A4 293 aa18.54■□□□□ 0.56
CLN3-230ENST00000568076 ZNRF4Q8WWF5 429 aa18.54■□□□□ 0.56
CLN3-230ENST00000568076 AP3S1Q92572 193 aa18.54■□□□□ 0.56
CLN3-230ENST00000568076 ZNF501Q96CX3 271 aaPredicted RBP18.54■□□□□ 0.56
CLN3-230ENST00000568076 C4orf36Q96KX1 117 aa18.54■□□□□ 0.56
CLN3-230ENST00000568076 GAL3ST4Q96RP7 486 aa18.54■□□□□ 0.56
CLN3-230ENST00000568076 SLC19A3Q9BZV2 496 aa18.54■□□□□ 0.56
CLN3-230ENST00000568076 RNF32Q9H0A6 362 aa18.54■□□□□ 0.56
CLN3-230ENST00000568076 ERVMER34-1Q9H9K5 563 aa18.54■□□□□ 0.56
CLN3-230ENST00000568076 NRIP3Q9NQ35 241 aa18.54■□□□□ 0.56
CLN3-230ENST00000568076 EXOSC3Q9NQT5 275 aaKnown RBP18.54■□□□□ 0.56
CLN3-230ENST00000568076 CDC14CA4D256 554 aa18.53■□□□□ 0.56
CLN3-230ENST00000568076 DYRK3O43781 588 aa18.53■□□□□ 0.56
CLN3-230ENST00000568076 RGS9O75916 674 aaPredicted RBP18.53■□□□□ 0.56
CLN3-230ENST00000568076 HCCSP53701 268 aa18.53■□□□□ 0.56
CLN3-230ENST00000568076 DEFA1P59665 94 aa18.53■□□□□ 0.56
CLN3-230ENST00000568076 DEFA3P59666 94 aa18.53■□□□□ 0.56
CLN3-230ENST00000568076 EBPQ15125 230 aaKnown RBP18.53■□□□□ 0.56
CLN3-230ENST00000568076 CCBE1Q6UXH8 406 aaPredicted RBP18.53■□□□□ 0.56
CLN3-230ENST00000568076 DPY19L2P2Q6ZN68 376 aa18.53■□□□□ 0.56
CLN3-230ENST00000568076 OR51L1Q8NGJ5 315 aa18.53■□□□□ 0.56
CLN3-230ENST00000568076 ZPLD1Q8TCW7 415 aa18.53■□□□□ 0.56
CLN3-230ENST00000568076 OIT3Q8WWZ8 545 aa18.53■□□□□ 0.56
CLN3-230ENST00000568076 ZMYND19Q96E35 227 aaPredicted RBP18.53■□□□□ 0.56
CLN3-230ENST00000568076 DIRAS2Q96HU8 199 aa18.53■□□□□ 0.56
CLN3-230ENST00000568076 DDOQ99489 341 aa18.53■□□□□ 0.56
CLN3-230ENST00000568076 ATF6BQ99941 703 aa18.53■□□□□ 0.56
CLN3-230ENST00000568076 TIGARQ9NQ88 270 aa18.53■□□□□ 0.56
CLN3-230ENST00000568076 ELOA3DA6NLF2 546 aaPredicted RBP18.53■□□□□ 0.56
CLN3-230ENST00000568076 J3QLW9 94 aa18.53■□□□□ 0.56
CLN3-230ENST00000568076 ZNF264O43296 627 aa18.53■□□□□ 0.56
CLN3-230ENST00000568076 ICOSLGO75144 302 aa18.53■□□□□ 0.56
CLN3-230ENST00000568076 ZNF19P17023 458 aa18.53■□□□□ 0.56
CLN3-230ENST00000568076 RPL4P36578 427 aaKnown RBP18.53■□□□□ 0.56
CLN3-230ENST00000568076 NSDHLQ15738 373 aa18.53■□□□□ 0.56
CLN3-230ENST00000568076 ELOA3BQ3SY89 546 aa18.53■□□□□ 0.56
CLN3-230ENST00000568076 ARHGAP40Q5TG30 622 aa18.53■□□□□ 0.56
CLN3-230ENST00000568076 WDR74Q6RFH5 385 aaPredicted RBP18.53■□□□□ 0.56
CLN3-230ENST00000568076 FAM131AQ6UXB0 335 aa18.53■□□□□ 0.56
CLN3-230ENST00000568076 VASH1Q7L8A9 365 aaPredicted RBP18.53■□□□□ 0.56
CLN3-230ENST00000568076 NPEPL1Q8NDH3 523 aa18.53■□□□□ 0.56
CLN3-230ENST00000568076 C17orf47Q8NEP4 570 aa18.53■□□□□ 0.56
CLN3-230ENST00000568076 ELOA3Q8NG57 546 aa18.53■□□□□ 0.56
CLN3-230ENST00000568076 MOSPD2Q8NHP6 518 aa18.53■□□□□ 0.56
CLN3-230ENST00000568076 LRFN5Q96NI6 719 aa18.53■□□□□ 0.56
CLN3-230ENST00000568076 DPYSL5Q9BPU6 564 aa18.53■□□□□ 0.56
CLN3-230ENST00000568076 PPIL3Q9H2H8 161 aaKnown RBP18.53■□□□□ 0.56
CLN3-230ENST00000568076 MARCH7Q9H992 704 aa18.53■□□□□ 0.56
CLN3-230ENST00000568076 COMMD3Q9UBI1 195 aa18.53■□□□□ 0.56
CLN3-230ENST00000568076 KLHL21Q9UJP4 597 aa18.53■□□□□ 0.56
CLN3-230ENST00000568076 NUP210LQ5VU65 1888 aa18.53■□□□□ 0.56
CLN3-230ENST00000568076 SEC16AO15027 2179 aa18.52■□□□□ 0.56
CLN3-230ENST00000568076 UNC13CQ8NB66 2214 aa18.52■□□□□ 0.56
CLN3-230ENST00000568076 A0A1B0GX78 115 aa18.52■□□□□ 0.56
CLN3-230ENST00000568076 C17orf51A8MQB3 221 aa18.52■□□□□ 0.56
CLN3-230ENST00000568076 PLPP2O43688 288 aa18.52■□□□□ 0.56
CLN3-230ENST00000568076 IL7P13232 177 aa18.52■□□□□ 0.56
CLN3-230ENST00000568076 POU4F2Q12837 409 aa18.52■□□□□ 0.56
CLN3-230ENST00000568076 ARL9Q6T311 187 aa18.52■□□□□ 0.56
CLN3-230ENST00000568076 RPTNQ6XPR3 784 aa18.52■□□□□ 0.56
CLN3-230ENST00000568076 TMPRSS9Q7Z410 1059 aa18.52■□□□□ 0.56
CLN3-230ENST00000568076 NR2C2APQ86WQ0 139 aa18.52■□□□□ 0.56
CLN3-230ENST00000568076 GHDCQ8N2G8 530 aa18.52■□□□□ 0.56
CLN3-230ENST00000568076 CCNL2Q96S94 520 aaPredicted RBP18.52■□□□□ 0.56
CLN3-230ENST00000568076 NMNAT3Q96T66 252 aa18.52■□□□□ 0.56
CLN3-230ENST00000568076 ELF4Q99607 663 aaPredicted RBP18.52■□□□□ 0.56
CLN3-230ENST00000568076 VN1R1Q9GZP7 353 aa18.52■□□□□ 0.56
CLN3-230ENST00000568076 KLHL1Q9NR64 748 aa18.52■□□□□ 0.56
CLN3-230ENST00000568076 FGF21Q9NSA1 209 aa18.52■□□□□ 0.56
CLN3-230ENST00000568076 WDR70Q9NW82 654 aa18.52■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms