RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 GRNP28799 593 aaKnown RBP17.48■□□□□ 0.39
CLN3-225ENST00000566824 CHRNB4P30926 498 aa17.48■□□□□ 0.39
CLN3-225ENST00000566824 DIO1P49895 249 aa17.48■□□□□ 0.39
CLN3-225ENST00000566824 CDH12P55289 794 aa17.48■□□□□ 0.39
CLN3-225ENST00000566824 SELENOWP63302 87 aa17.48■□□□□ 0.39
CLN3-225ENST00000566824 EGR4Q05215 589 aa17.48■□□□□ 0.39
CLN3-225ENST00000566824 ENTPD8Q5MY95 495 aa17.48■□□□□ 0.39
CLN3-225ENST00000566824 XKRXQ6PP77 449 aa17.48■□□□□ 0.39
CLN3-225ENST00000566824 WDR88Q6ZMY6 472 aa17.48■□□□□ 0.39
CLN3-225ENST00000566824 TMPPEQ6ZT21 453 aa17.48■□□□□ 0.39
CLN3-225ENST00000566824 CBLL1Q75N03 491 aa17.48■□□□□ 0.39
CLN3-225ENST00000566824 P4HA3Q7Z4N8 544 aa17.48■□□□□ 0.39
CLN3-225ENST00000566824 RANBP3LQ86VV4 465 aaPredicted RBP17.48■□□□□ 0.39
CLN3-225ENST00000566824 RELL2Q8NC24 303 aaPredicted RBP17.48■□□□□ 0.39
CLN3-225ENST00000566824 LILRB4Q8NHJ6 448 aa17.48■□□□□ 0.39
CLN3-225ENST00000566824 SLC25A43Q8WUT9 341 aaPredicted RBP17.48■□□□□ 0.39
CLN3-225ENST00000566824 PROX1Q92786 737 aa17.48■□□□□ 0.39
CLN3-225ENST00000566824 FAM162AQ96A26 154 aa17.48■□□□□ 0.39
CLN3-225ENST00000566824 SLC7A6OSQ96CW6 309 aaPredicted RBP17.48■□□□□ 0.39
CLN3-225ENST00000566824 CLPTM1LQ96KA5 538 aa17.48■□□□□ 0.39
CLN3-225ENST00000566824 TM9SF2Q99805 663 aa17.48■□□□□ 0.39
CLN3-225ENST00000566824 RNF122Q9H9V4 155 aa17.48■□□□□ 0.39
CLN3-225ENST00000566824 RPS6KB2Q9UBS0 482 aa17.48■□□□□ 0.39
CLN3-225ENST00000566824 BAG5Q9UL15 447 aa17.48■□□□□ 0.39
CLN3-225ENST00000566824 SNX13Q9Y5W8 968 aa17.48■□□□□ 0.39
CLN3-225ENST00000566824 HSPB2A8KAH6 182 aa17.47■□□□□ 0.39
CLN3-225ENST00000566824 SMAD9O15198 467 aaKnown RBP17.47■□□□□ 0.39
CLN3-225ENST00000566824 ZNF208O43345 1280 aa17.47■□□□□ 0.39
CLN3-225ENST00000566824 NPIPB7O75200 414 aa17.47■□□□□ 0.39
CLN3-225ENST00000566824 PDE5AO76074 875 aa17.47■□□□□ 0.39
CLN3-225ENST00000566824 IFNA14P01570 189 aa17.47■□□□□ 0.39
CLN3-225ENST00000566824 AGAP20933 346 aa17.47■□□□□ 0.39
CLN3-225ENST00000566824 HSPB2Q16082 182 aa17.47■□□□□ 0.39
CLN3-225ENST00000566824 PDSS1Q5T2R2 415 aa17.47■□□□□ 0.39
CLN3-225ENST00000566824 HIST2H2BCQ6DN03 193 aa17.47■□□□□ 0.39
CLN3-225ENST00000566824 C6orf89Q6UWU4 347 aa17.47■□□□□ 0.39
CLN3-225ENST00000566824 RASSF5Q8WWW0 418 aa17.47■□□□□ 0.39
CLN3-225ENST00000566824 HSH2DQ96JZ2 352 aa17.47■□□□□ 0.39
CLN3-225ENST00000566824 TMEM27Q9HBJ8 222 aa17.47■□□□□ 0.39
CLN3-225ENST00000566824 NDE1Q9NXR1 346 aa17.47■□□□□ 0.39
CLN3-225ENST00000566824 COQ3Q9NZJ6 369 aa17.47■□□□□ 0.39
CLN3-225ENST00000566824 SPIN1Q9Y657 262 aaPredicted RBP17.47■□□□□ 0.39
CLN3-225ENST00000566824 A0A1W2PNV4 684 aa17.47■□□□□ 0.39
CLN3-225ENST00000566824 C19orf84I3L1E1 186 aa17.47■□□□□ 0.39
CLN3-225ENST00000566824 SULT2B1O00204 365 aa17.47■□□□□ 0.39
CLN3-225ENST00000566824 ARPC2O15144 300 aa17.47■□□□□ 0.39
CLN3-225ENST00000566824 FMO6PO60774 539 aa17.47■□□□□ 0.39
CLN3-225ENST00000566824 RAMP1O60894 148 aa17.47■□□□□ 0.39
CLN3-225ENST00000566824 TNFSF13O75888 250 aa17.47■□□□□ 0.39
CLN3-225ENST00000566824 SYNGR4O95473 234 aa17.47■□□□□ 0.39
CLN3-225ENST00000566824 CLDN14O95500 239 aa17.47■□□□□ 0.39
CLN3-225ENST00000566824 BMP5P22003 454 aa17.47■□□□□ 0.39
CLN3-225ENST00000566824 CTSSP25774 331 aa17.47■□□□□ 0.39
CLN3-225ENST00000566824 COL8A1P27658 744 aa17.47■□□□□ 0.39
CLN3-225ENST00000566824 RAC3P60763 192 aa17.47■□□□□ 0.39
CLN3-225ENST00000566824 NCALDP61601 193 aa17.47■□□□□ 0.39
CLN3-225ENST00000566824 SIRPAP78324 504 aa17.47■□□□□ 0.39
CLN3-225ENST00000566824 CBX1P83916 185 aa17.47■□□□□ 0.39
CLN3-225ENST00000566824 GUSBP1Q15486 140 aa17.47■□□□□ 0.39
CLN3-225ENST00000566824 ALG10BQ5I7T1 473 aa17.47■□□□□ 0.39
CLN3-225ENST00000566824 VWA1Q6PCB0 445 aa17.47■□□□□ 0.39
CLN3-225ENST00000566824 ULK3Q6PHR2 472 aa17.47■□□□□ 0.39
CLN3-225ENST00000566824 DEF8Q6ZN54 512 aa17.47■□□□□ 0.39
CLN3-225ENST00000566824 TSEN54Q7Z6J9 526 aaKnown RBP17.47■□□□□ 0.39
CLN3-225ENST00000566824 RNF217Q8TC41 542 aa17.47■□□□□ 0.39
CLN3-225ENST00000566824 ABHD3Q8WU67 409 aa17.47■□□□□ 0.39
CLN3-225ENST00000566824 ASB5Q8WWX0 329 aa17.47■□□□□ 0.39
CLN3-225ENST00000566824 SLC38A4Q969I6 547 aa17.47■□□□□ 0.39
CLN3-225ENST00000566824 DDIT4LQ96D03 193 aa17.47■□□□□ 0.39
CLN3-225ENST00000566824 KTI12Q96EK9 354 aaPredicted RBP17.47■□□□□ 0.39
CLN3-225ENST00000566824 PRRG4Q9BZD6 226 aa17.47■□□□□ 0.39
CLN3-225ENST00000566824 AMBRA1Q9C0C7 1298 aa17.47■□□□□ 0.39
CLN3-225ENST00000566824 EVA1AQ9H8M9 152 aa17.47■□□□□ 0.39
CLN3-225ENST00000566824 ING1Q9UK53 422 aaPredicted RBP17.47■□□□□ 0.39
CLN3-225ENST00000566824 PRDM4Q9UKN5 801 aa17.47■□□□□ 0.39
CLN3-225ENST00000566824 FREM1Q5H8C1 2179 aa17.46■□□□□ 0.39
CLN3-225ENST00000566824 ELOA3DA6NLF2 546 aaPredicted RBP17.46■□□□□ 0.38
CLN3-225ENST00000566824 A8MVM7 634 aa17.46■□□□□ 0.38
CLN3-225ENST00000566824 KIR2DL2P43627 348 aaPredicted RBP17.46■□□□□ 0.38
CLN3-225ENST00000566824 CLK1P49759 484 aaKnown RBP17.46■□□□□ 0.38
CLN3-225ENST00000566824 OR2B6P58173 313 aa17.46■□□□□ 0.38
CLN3-225ENST00000566824 BNIP1Q12981 228 aa17.46■□□□□ 0.38
CLN3-225ENST00000566824 ELOA3BQ3SY89 546 aa17.46■□□□□ 0.38
CLN3-225ENST00000566824 ELOA3Q8NG57 546 aa17.46■□□□□ 0.38
CLN3-225ENST00000566824 ADAMTS16Q8TE57 1224 aa17.46■□□□□ 0.38
CLN3-225ENST00000566824 RNF128Q8TEB7 428 aa17.46■□□□□ 0.38
CLN3-225ENST00000566824 CA5BP1Q8WTZ4 195 aa17.46■□□□□ 0.38
CLN3-225ENST00000566824 CPNE4Q96A23 557 aaPredicted RBP17.46■□□□□ 0.38
CLN3-225ENST00000566824 PTDSS2Q9BVG9 487 aa17.46■□□□□ 0.38
CLN3-225ENST00000566824 POTEKPQ9BYX7 375 aa17.46■□□□□ 0.38
CLN3-225ENST00000566824 DCAF13Q9NV06 445 aaKnown RBP17.46■□□□□ 0.38
CLN3-225ENST00000566824 ADPRHL2Q9NX46 363 aa17.46■□□□□ 0.38
CLN3-225ENST00000566824 PAQR5Q9NXK6 330 aaPredicted RBP17.46■□□□□ 0.38
CLN3-225ENST00000566824 MCTS1Q9ULC4 181 aaKnown RBP17.46■□□□□ 0.38
CLN3-225ENST00000566824 SLC9A8Q9Y2E8 581 aa17.46■□□□□ 0.38
CLN3-225ENST00000566824 HDGFL3Q9Y3E1 203 aa17.46■□□□□ 0.38
CLN3-225ENST00000566824 A0A087WUJ7 227 aa17.45■□□□□ 0.38
CLN3-225ENST00000566824 LIPT2A6NK58 231 aa17.45■□□□□ 0.38
CLN3-225ENST00000566824 PMS2P2O95744 297 aa17.45■□□□□ 0.38
CLN3-225ENST00000566824 ATP6V1B2P21281 511 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms