RNA–Protein interactions for RNA: ENST00000565023.1

VPS9D1-204, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 5

Gene VPS9D1, Length 775 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-204ENST00000565023 GRINAQ7Z429 371 aa12.12□□□□□ -0.47
VPS9D1-204ENST00000565023 PEX5LQ8IYB4 626 aa12.12□□□□□ -0.47
VPS9D1-204ENST00000565023 OR52P1PQ8NH57 321 aa12.12□□□□□ -0.47
VPS9D1-204ENST00000565023 TMEM19Q96HH6 336 aa12.12□□□□□ -0.47
VPS9D1-204ENST00000565023 ARL5BQ96KC2 179 aa12.12□□□□□ -0.47
VPS9D1-204ENST00000565023 HS3ST6Q96QI5 342 aa12.12□□□□□ -0.47
VPS9D1-204ENST00000565023 CCDC106Q9BWC9 280 aa12.12□□□□□ -0.47
VPS9D1-204ENST00000565023 BCL2L10Q9HD36 194 aa12.12□□□□□ -0.47
VPS9D1-204ENST00000565023 FANCFQ9NPI8 374 aa12.12□□□□□ -0.47
VPS9D1-204ENST00000565023 KLHL9Q9P2J3 617 aa12.12□□□□□ -0.47
VPS9D1-204ENST00000565023 PRSS50Q9UI38 385 aa12.12□□□□□ -0.47
VPS9D1-204ENST00000565023 HRNRQ86YZ3 2850 aaPredicted RBP12.12□□□□□ -0.47
VPS9D1-204ENST00000565023 DSCAMO60469 2012 aa12.11□□□□□ -0.47
VPS9D1-204ENST00000565023 TMED7-TICAM2A0A0A6YYA0 188 aa12.11□□□□□ -0.47
VPS9D1-204ENST00000565023 A0A0G2JPF8 293 aa12.11□□□□□ -0.47
VPS9D1-204ENST00000565023 TMEM72A0PK05 275 aa12.11□□□□□ -0.47
VPS9D1-204ENST00000565023 HNRNPCL2B2RXH8 293 aa12.11□□□□□ -0.47
VPS9D1-204ENST00000565023 HNRNPCL3B7ZW38 293 aa12.11□□□□□ -0.47
VPS9D1-204ENST00000565023 FXYD1O00168 92 aa12.11□□□□□ -0.47
VPS9D1-204ENST00000565023 ETV2O00321 342 aaPredicted RBP12.11□□□□□ -0.47
VPS9D1-204ENST00000565023 MRASO14807 208 aa12.11□□□□□ -0.47
VPS9D1-204ENST00000565023 HNRNPCL1O60812 293 aaKnown RBP12.11□□□□□ -0.47
VPS9D1-204ENST00000565023 DNAJA2O60884 412 aa12.11□□□□□ -0.47
VPS9D1-204ENST00000565023 GOSR1O95249 250 aa12.11□□□□□ -0.47
VPS9D1-204ENST00000565023 ADAP00813 363 aa12.11□□□□□ -0.47
VPS9D1-204ENST00000565023 THBDP07204 575 aa12.11□□□□□ -0.47
VPS9D1-204ENST00000565023 YES1P07947 543 aa12.11□□□□□ -0.47
VPS9D1-204ENST00000565023 HNRNPCL4P0DMR1 293 aa12.11□□□□□ -0.47
VPS9D1-204ENST00000565023 ARAFP10398 606 aa12.11□□□□□ -0.47
VPS9D1-204ENST00000565023 NID1P14543 1247 aa12.11□□□□□ -0.47
VPS9D1-204ENST00000565023 IL32P24001 234 aa12.11□□□□□ -0.47
VPS9D1-204ENST00000565023 TACR3P29371 465 aa12.11□□□□□ -0.47
VPS9D1-204ENST00000565023 CSNK2A1P68400 391 aaPredicted RBP12.11□□□□□ -0.47
VPS9D1-204ENST00000565023 MMEL1Q495T6 779 aa12.11□□□□□ -0.47
VPS9D1-204ENST00000565023 GCNT6Q5T4J0 391 aa12.11□□□□□ -0.47
VPS9D1-204ENST00000565023 REP15Q6BDI9 236 aa12.11□□□□□ -0.47
VPS9D1-204ENST00000565023 ADGRG3Q86Y34 549 aa12.11□□□□□ -0.47
VPS9D1-204ENST00000565023 TREML1Q86YW5 311 aa12.11□□□□□ -0.47
VPS9D1-204ENST00000565023 CMIPQ8IY22 773 aa12.11□□□□□ -0.47
VPS9D1-204ENST00000565023 SLC43A2Q8N370 569 aa12.11□□□□□ -0.47
VPS9D1-204ENST00000565023 CADM2Q8N3J6 435 aa12.11□□□□□ -0.47
VPS9D1-204ENST00000565023 RP9Q8TA86 221 aaKnown RBP12.11□□□□□ -0.47
VPS9D1-204ENST00000565023 SLC25A43Q8WUT9 341 aaPredicted RBP12.11□□□□□ -0.47
VPS9D1-204ENST00000565023 MAL2Q969L2 176 aa12.11□□□□□ -0.47
VPS9D1-204ENST00000565023 ZHX1-C8orf76Q96EF9 292 aa12.11□□□□□ -0.47
VPS9D1-204ENST00000565023 FOXC2Q99958 501 aa12.11□□□□□ -0.47
VPS9D1-204ENST00000565023 PSD2Q9BQI7 771 aa12.11□□□□□ -0.47
VPS9D1-204ENST00000565023 TMEM38AQ9H6F2 299 aa12.11□□□□□ -0.47
VPS9D1-204ENST00000565023 CACYBPQ9HB71 228 aaKnown RBP12.11□□□□□ -0.47
VPS9D1-204ENST00000565023 EXOSC3Q9NQT5 275 aaKnown RBP12.11□□□□□ -0.47
VPS9D1-204ENST00000565023 ZNF443Q9Y2A4 671 aaPredicted RBP12.11□□□□□ -0.47
VPS9D1-204ENST00000565023 TMED7Q9Y3B3 224 aa12.11□□□□□ -0.47
VPS9D1-204ENST00000565023 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.1□□□□□ -0.47
VPS9D1-204ENST00000565023 CFAP73A6NFT4 308 aa12.1□□□□□ -0.47
VPS9D1-204ENST00000565023 C5orf58C9J3I9 102 aa12.1□□□□□ -0.47
VPS9D1-204ENST00000565023 CYTIPO60759 359 aa12.1□□□□□ -0.47
VPS9D1-204ENST00000565023 SHOX2O60902 331 aaPredicted RBP12.1□□□□□ -0.47
VPS9D1-204ENST00000565023 PGM3O95394 542 aa12.1□□□□□ -0.47
VPS9D1-204ENST00000565023 IGHV3-9P01782 118 aa12.1□□□□□ -0.47
VPS9D1-204ENST00000565023 COX4I1P13073 169 aa12.1□□□□□ -0.47
VPS9D1-204ENST00000565023 UQCRBP14927 111 aa12.1□□□□□ -0.47
VPS9D1-204ENST00000565023 EDNRAP25101 427 aa12.1□□□□□ -0.47
VPS9D1-204ENST00000565023 POLR2HP52434 150 aaKnown RBP12.1□□□□□ -0.47
VPS9D1-204ENST00000565023 MTPNP58546 118 aa12.1□□□□□ -0.47
VPS9D1-204ENST00000565023 EPS8Q12929 822 aa12.1□□□□□ -0.47
VPS9D1-204ENST00000565023 SELPLGQ14242 412 aa12.1□□□□□ -0.47
VPS9D1-204ENST00000565023 CAPRIN1Q14444 709 aaKnown RBP12.1□□□□□ -0.47
VPS9D1-204ENST00000565023 ADRM1Q16186 407 aa12.1□□□□□ -0.47
VPS9D1-204ENST00000565023 DEFB113Q30KQ7 82 aa12.1□□□□□ -0.47
VPS9D1-204ENST00000565023 LIN52Q52LA3 116 aa12.1□□□□□ -0.47
VPS9D1-204ENST00000565023 NANOGP8Q6NSW7 305 aa12.1□□□□□ -0.47
VPS9D1-204ENST00000565023 ZNF100Q8IYN0 542 aa12.1□□□□□ -0.47
VPS9D1-204ENST00000565023 POU5F2Q8N7G0 328 aa12.1□□□□□ -0.47
VPS9D1-204ENST00000565023 PCYOX1LQ8NBM8 494 aa12.1□□□□□ -0.47
VPS9D1-204ENST00000565023 S100PBPQ96BU1 408 aa12.1□□□□□ -0.47
VPS9D1-204ENST00000565023 LRRC58Q96CX6 371 aa12.1□□□□□ -0.47
VPS9D1-204ENST00000565023 CCT8L2Q96SF2 557 aa12.1□□□□□ -0.47
VPS9D1-204ENST00000565023 KAT8Q9H7Z6 458 aaKnown RBP12.1□□□□□ -0.47
VPS9D1-204ENST00000565023 NANOGQ9H9S0 305 aa12.1□□□□□ -0.47
VPS9D1-204ENST00000565023 OSGIN1Q9UJX0 560 aa12.1□□□□□ -0.47
VPS9D1-204ENST00000565023 ING1Q9UK53 422 aaPredicted RBP12.1□□□□□ -0.47
VPS9D1-204ENST00000565023 ADAM21Q9UKJ8 722 aa12.1□□□□□ -0.47
VPS9D1-204ENST00000565023 GPR52Q9Y2T5 361 aa12.1□□□□□ -0.47
VPS9D1-204ENST00000565023 ARL2BPQ9Y2Y0 163 aa12.1□□□□□ -0.47
VPS9D1-204ENST00000565023 ZC3H12DA2A288 527 aaKnown RBP12.09□□□□□ -0.47
VPS9D1-204ENST00000565023 FRS3O43559 492 aa12.09□□□□□ -0.47
VPS9D1-204ENST00000565023 RAMP1O60894 148 aa12.09□□□□□ -0.47
VPS9D1-204ENST00000565023 GCM2O75603 506 aaPredicted RBP12.09□□□□□ -0.47
VPS9D1-204ENST00000565023 LYZL6O75951 148 aa12.09□□□□□ -0.47
VPS9D1-204ENST00000565023 PLAUP00749 431 aa12.09□□□□□ -0.47
VPS9D1-204ENST00000565023 THBS1P07996 1170 aa12.09□□□□□ -0.47
VPS9D1-204ENST00000565023 PRG2P13727 222 aa12.09□□□□□ -0.47
VPS9D1-204ENST00000565023 ETS2P15036 469 aa12.09□□□□□ -0.47
VPS9D1-204ENST00000565023 CD53P19397 219 aa12.09□□□□□ -0.47
VPS9D1-204ENST00000565023 PCYT1AP49585 367 aa12.09□□□□□ -0.47
VPS9D1-204ENST00000565023 CDK6Q00534 326 aa12.09□□□□□ -0.47
VPS9D1-204ENST00000565023 RBBP4Q09028 425 aa12.09□□□□□ -0.47
VPS9D1-204ENST00000565023 BNIP2Q12982 314 aa12.09□□□□□ -0.47
VPS9D1-204ENST00000565023 LARS2Q15031 903 aaKnown RBP12.09□□□□□ -0.47
VPS9D1-204ENST00000565023 STK11Q15831 433 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms