RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 SLC1A3P43003 542 aa9.56□□□□□ -0.88
VPS39-208ENST00000564994 CRATP43155 626 aa9.56□□□□□ -0.88
VPS39-208ENST00000564994 MAGEA8P43361 318 aa9.56□□□□□ -0.88
VPS39-208ENST00000564994 HTR3AP46098 478 aa9.56□□□□□ -0.88
VPS39-208ENST00000564994 CLK1P49759 484 aaKnown RBP9.56□□□□□ -0.88
VPS39-208ENST00000564994 POLR2HP52434 150 aaKnown RBP9.56□□□□□ -0.88
VPS39-208ENST00000564994 POLR2JP52435 117 aaKnown RBP9.56□□□□□ -0.88
VPS39-208ENST00000564994 SLC16A1P53985 500 aa9.56□□□□□ -0.88
VPS39-208ENST00000564994 OR2B6P58173 313 aa9.56□□□□□ -0.88
VPS39-208ENST00000564994 DSTNP60981 165 aa9.56□□□□□ -0.88
VPS39-208ENST00000564994 EPS8Q12929 822 aa9.56□□□□□ -0.88
VPS39-208ENST00000564994 CAPRIN1Q14444 709 aaKnown RBP9.56□□□□□ -0.88
VPS39-208ENST00000564994 KRTAP21-3Q3LHN1 58 aa9.56□□□□□ -0.88
VPS39-208ENST00000564994 RPS26P11Q5JNZ5 115 aaPredicted RBP9.56□□□□□ -0.88
VPS39-208ENST00000564994 AGBL2Q5U5Z8 902 aa9.56□□□□□ -0.88
VPS39-208ENST00000564994 ADAM5Q6NVV9 412 aa9.56□□□□□ -0.88
VPS39-208ENST00000564994 ZNF836Q6ZNA1 936 aa9.56□□□□□ -0.88
VPS39-208ENST00000564994 MSANTD1Q6ZTZ1 278 aa9.56□□□□□ -0.88
VPS39-208ENST00000564994 ZNF100Q8IYN0 542 aa9.56□□□□□ -0.88
VPS39-208ENST00000564994 SLC38A5Q8WUX1 472 aa9.56□□□□□ -0.88
VPS39-208ENST00000564994 GTF2H4Q92759 462 aa9.56□□□□□ -0.88
VPS39-208ENST00000564994 PMM1Q92871 262 aa9.56□□□□□ -0.88
VPS39-208ENST00000564994 ITCHQ96J02 903 aa9.56□□□□□ -0.88
VPS39-208ENST00000564994 COX4I2Q96KJ9 171 aa9.56□□□□□ -0.88
VPS39-208ENST00000564994 ADAM19Q9H013 955 aa9.56□□□□□ -0.88
VPS39-208ENST00000564994 PAIP1Q9H074 479 aaKnown RBP9.56□□□□□ -0.88
VPS39-208ENST00000564994 SLCO1B3Q9NPD5 702 aa9.56□□□□□ -0.88
VPS39-208ENST00000564994 ZNF701Q9NV72 531 aaPredicted RBP9.56□□□□□ -0.88
VPS39-208ENST00000564994 NPAP1Q9NZP6 1156 aa9.56□□□□□ -0.88
VPS39-208ENST00000564994 TMEM181Q9P2C4 612 aa9.56□□□□□ -0.88
VPS39-208ENST00000564994 P2RX2Q9UBL9 471 aa9.56□□□□□ -0.88
VPS39-208ENST00000564994 TRAPPC4Q9Y296 219 aa9.56□□□□□ -0.88
VPS39-208ENST00000564994 RNF115Q9Y4L5 304 aa9.56□□□□□ -0.88
VPS39-208ENST00000564994 ALPK2Q86TB3 2170 aa9.56□□□□□ -0.88
VPS39-208ENST00000564994 JMJD1CQ15652 2540 aa9.55□□□□□ -0.88
VPS39-208ENST00000564994 ABCA2Q9BZC7 2435 aa9.55□□□□□ -0.88
VPS39-208ENST00000564994 FAM234BA2RU67 622 aa9.55□□□□□ -0.88
VPS39-208ENST00000564994 CLOCKO15516 846 aa9.55□□□□□ -0.88
VPS39-208ENST00000564994 ZNF208O43345 1280 aa9.55□□□□□ -0.88
VPS39-208ENST00000564994 PGM3O95394 542 aa9.55□□□□□ -0.88
VPS39-208ENST00000564994 CNOT4O95628 575 aaKnown RBP9.55□□□□□ -0.88
VPS39-208ENST00000564994 CD3EP07766 207 aa9.55□□□□□ -0.88
VPS39-208ENST00000564994 SOD3P08294 240 aa9.55□□□□□ -0.88
VPS39-208ENST00000564994 NUDT7P0C024 238 aa9.55□□□□□ -0.88
VPS39-208ENST00000564994 DANCRP0C864 163 aa9.55□□□□□ -0.88
VPS39-208ENST00000564994 PRG2P13727 222 aa9.55□□□□□ -0.88
VPS39-208ENST00000564994 FKBP2P26885 142 aaKnown RBP9.55□□□□□ -0.88
VPS39-208ENST00000564994 FOXG1P55316 489 aaPredicted RBP9.55□□□□□ -0.88
VPS39-208ENST00000564994 LTBQ06643 244 aa9.55□□□□□ -0.88
VPS39-208ENST00000564994 BSPH1Q075Z2 132 aa9.55□□□□□ -0.88
VPS39-208ENST00000564994 GNA13Q14344 377 aa9.55□□□□□ -0.88
VPS39-208ENST00000564994 STK11Q15831 433 aa9.55□□□□□ -0.88
VPS39-208ENST00000564994 C6orf10Q5SRN2 563 aa9.55□□□□□ -0.88
VPS39-208ENST00000564994 FBXW9Q5XUX1 488 aa9.55□□□□□ -0.88
VPS39-208ENST00000564994 SLC2A7Q6PXP3 512 aa9.55□□□□□ -0.88
VPS39-208ENST00000564994 FUNDC1Q8IVP5 155 aa9.55□□□□□ -0.88
VPS39-208ENST00000564994 PEX5LQ8IYB4 626 aa9.55□□□□□ -0.88
VPS39-208ENST00000564994 MIER2Q8N344 545 aa9.55□□□□□ -0.88
VPS39-208ENST00000564994 CLIP4Q8N3C7 705 aa9.55□□□□□ -0.88
VPS39-208ENST00000564994 ZNF433Q8N7K0 673 aaPredicted RBP9.55□□□□□ -0.88
VPS39-208ENST00000564994 KBTBD8Q8NFY9 601 aa9.55□□□□□ -0.88
VPS39-208ENST00000564994 OR52P1PQ8NH57 321 aa9.55□□□□□ -0.88
VPS39-208ENST00000564994 PIGXQ8TBF5 258 aa9.55□□□□□ -0.88
VPS39-208ENST00000564994 TMEM171Q8WVE6 324 aa9.55□□□□□ -0.88
VPS39-208ENST00000564994 APH1AQ96BI3 265 aa9.55□□□□□ -0.88
VPS39-208ENST00000564994 ZHX1-C8orf76Q96EF9 292 aa9.55□□□□□ -0.88
VPS39-208ENST00000564994 TMEM19Q96HH6 336 aa9.55□□□□□ -0.88
VPS39-208ENST00000564994 C7orf26Q96N11 449 aa9.55□□□□□ -0.88
VPS39-208ENST00000564994 USB1Q9BQ65 265 aaKnown RBP9.55□□□□□ -0.88
VPS39-208ENST00000564994 EBF4Q9BQW3 602 aa9.55□□□□□ -0.88
VPS39-208ENST00000564994 RSPO3Q9BXY4 272 aaPredicted RBP9.55□□□□□ -0.88
VPS39-208ENST00000564994 ESRP2Q9H6T0 727 aaKnown RBP9.55□□□□□ -0.88
VPS39-208ENST00000564994 RMND5AQ9H871 391 aa9.55□□□□□ -0.88
VPS39-208ENST00000564994 NGBQ9NPG2 151 aa9.55□□□□□ -0.88
VPS39-208ENST00000564994 EMC3Q9P0I2 261 aa9.55□□□□□ -0.88
VPS39-208ENST00000564994 LAMP3Q9UQV4 416 aa9.55□□□□□ -0.88
VPS39-208ENST00000564994 ZNF443Q9Y2A4 671 aaPredicted RBP9.55□□□□□ -0.88
VPS39-208ENST00000564994 NOSIPQ9Y314 301 aaKnown RBP9.55□□□□□ -0.88
VPS39-208ENST00000564994 PCDHB14Q9Y5E9 798 aa9.55□□□□□ -0.88
VPS39-208ENST00000564994 DNHD1Q96M86 4753 aa9.55□□□□□ -0.88
VPS39-208ENST00000564994 OR5H1A6NKK0 313 aa9.54□□□□□ -0.88
VPS39-208ENST00000564994 GPR171O14626 319 aa9.54□□□□□ -0.88
VPS39-208ENST00000564994 RAD51DO75771 328 aa9.54□□□□□ -0.88
VPS39-208ENST00000564994 LY6G6DO95868 133 aa9.54□□□□□ -0.88
VPS39-208ENST00000564994 GGT1P19440 569 aa9.54□□□□□ -0.88
VPS39-208ENST00000564994 MRPL19P49406 292 aaKnown RBP9.54□□□□□ -0.88
VPS39-208ENST00000564994 IDH3AP50213 366 aa9.54□□□□□ -0.88
VPS39-208ENST00000564994 CRISP3P54108 245 aa9.54□□□□□ -0.88
VPS39-208ENST00000564994 SLC35A1P78382 337 aa9.54□□□□□ -0.88
VPS39-208ENST00000564994 BNIP2Q12982 314 aa9.54□□□□□ -0.88
VPS39-208ENST00000564994 SLC17A1Q14916 467 aa9.54□□□□□ -0.88
VPS39-208ENST00000564994 PPA1Q15181 289 aa9.54□□□□□ -0.88
VPS39-208ENST00000564994 ZNF672Q499Z4 452 aaPredicted RBP9.54□□□□□ -0.88
VPS39-208ENST00000564994 LIN52Q52LA3 116 aa9.54□□□□□ -0.88
VPS39-208ENST00000564994 TTMPQ5BVD1 217 aa9.54□□□□□ -0.88
VPS39-208ENST00000564994 TIMM23BQ5SRD1 257 aa9.54□□□□□ -0.88
VPS39-208ENST00000564994 RNF220Q5VTB9 566 aa9.54□□□□□ -0.88
VPS39-208ENST00000564994 CLEC9AQ6UXN8 241 aa9.54□□□□□ -0.88
VPS39-208ENST00000564994 MSRB3Q8IXL7 192 aa9.54□□□□□ -0.88
VPS39-208ENST00000564994 ZNF440Q8IYI8 595 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms