RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 PGRP06401 933 aa16.74■□□□□ 0.27
VPS35-202ENST00000561713 CDH11P55287 796 aa16.74■□□□□ 0.27
VPS35-202ENST00000561713 FOXG1P55316 489 aaPredicted RBP16.74■□□□□ 0.27
VPS35-202ENST00000561713 OR2B6P58173 313 aa16.74■□□□□ 0.27
VPS35-202ENST00000561713 KCNJ10P78508 379 aa16.74■□□□□ 0.27
VPS35-202ENST00000561713 CHRFAM7AQ494W8 412 aa16.74■□□□□ 0.27
VPS35-202ENST00000561713 ADGRG3Q86Y34 549 aa16.74■□□□□ 0.27
VPS35-202ENST00000561713 UBE2J2Q8N2K1 259 aa16.74■□□□□ 0.27
VPS35-202ENST00000561713 WDR60Q8WVS4 1066 aa16.74■□□□□ 0.27
VPS35-202ENST00000561713 OR52E6Q96RD3 313 aa16.74■□□□□ 0.27
VPS35-202ENST00000561713 ST6GALNAC1Q9NSC7 600 aaPredicted RBP16.74■□□□□ 0.27
VPS35-202ENST00000561713 EMC3Q9P0I2 261 aa16.74■□□□□ 0.27
VPS35-202ENST00000561713 GPR45Q9Y5Y3 372 aa16.74■□□□□ 0.27
VPS35-202ENST00000561713 SPIN1Q9Y657 262 aaPredicted RBP16.74■□□□□ 0.27
VPS35-202ENST00000561713 IGKV3D-15A0A087WSY6 115 aa16.73■□□□□ 0.27
VPS35-202ENST00000561713 TMEM72A0PK05 275 aa16.73■□□□□ 0.27
VPS35-202ENST00000561713 ZC3H12DA2A288 527 aaKnown RBP16.73■□□□□ 0.27
VPS35-202ENST00000561713 A8MV72 311 aaPredicted RBP16.73■□□□□ 0.27
VPS35-202ENST00000561713 GPRIN2O60269 458 aa16.73■□□□□ 0.27
VPS35-202ENST00000561713 CD8AP01732 235 aa16.73■□□□□ 0.27
VPS35-202ENST00000561713 NTF4P34130 210 aa16.73■□□□□ 0.27
VPS35-202ENST00000561713 APOBEC1P41238 236 aaKnown RBP16.73■□□□□ 0.27
VPS35-202ENST00000561713 GTDC1Q4AE62 458 aa16.73■□□□□ 0.27
VPS35-202ENST00000561713 MRPL2Q5T653 305 aaKnown RBP16.73■□□□□ 0.27
VPS35-202ENST00000561713 C9orf135Q5VTT2 229 aa16.73■□□□□ 0.27
VPS35-202ENST00000561713 NXNQ6DKJ4 435 aa16.73■□□□□ 0.27
VPS35-202ENST00000561713 ZNF621Q6ZSS3 439 aa16.73■□□□□ 0.27
VPS35-202ENST00000561713 MTDHQ86UE4 582 aaKnown RBP16.73■□□□□ 0.27
VPS35-202ENST00000561713 ZNF433Q8N7K0 673 aaPredicted RBP16.73■□□□□ 0.27
VPS35-202ENST00000561713 OR52N5Q8NH56 324 aa16.73■□□□□ 0.27
VPS35-202ENST00000561713 APH1AQ96BI3 265 aa16.73■□□□□ 0.27
VPS35-202ENST00000561713 ZHX1-C8orf76Q96EF9 292 aa16.73■□□□□ 0.27
VPS35-202ENST00000561713 TRIM2Q9C040 744 aa16.73■□□□□ 0.27
VPS35-202ENST00000561713 NGBQ9NPG2 151 aa16.73■□□□□ 0.27
VPS35-202ENST00000561713 EXOSC3Q9NQT5 275 aaKnown RBP16.73■□□□□ 0.27
VPS35-202ENST00000561713 NOSIPQ9Y314 301 aaKnown RBP16.73■□□□□ 0.27
VPS35-202ENST00000561713 TMED7-TICAM2A0A0A6YYA0 188 aa16.72■□□□□ 0.27
VPS35-202ENST00000561713 AGAP5A6NIR3 686 aa16.72■□□□□ 0.27
VPS35-202ENST00000561713 SHISA9B4DS77 424 aa16.72■□□□□ 0.27
VPS35-202ENST00000561713 ABCD4O14678 606 aa16.72■□□□□ 0.27
VPS35-202ENST00000561713 PHF1O43189 567 aaPredicted RBP16.72■□□□□ 0.27
VPS35-202ENST00000561713 SNUPNO95149 360 aaKnown RBP16.72■□□□□ 0.27
VPS35-202ENST00000561713 PMS2P2O95744 297 aa16.72■□□□□ 0.27
VPS35-202ENST00000561713 GGT1P19440 569 aa16.72■□□□□ 0.27
VPS35-202ENST00000561713 ZNF83P51522 516 aa16.72■□□□□ 0.27
VPS35-202ENST00000561713 MAPK11Q15759 364 aa16.72■□□□□ 0.27
VPS35-202ENST00000561713 RPS26P11Q5JNZ5 115 aaPredicted RBP16.72■□□□□ 0.27
VPS35-202ENST00000561713 CASP12Q6UXS9 341 aa16.72■□□□□ 0.27
VPS35-202ENST00000561713 MAVSQ7Z434 540 aa16.72■□□□□ 0.27
VPS35-202ENST00000561713 LRRC34Q8IZ02 419 aa16.72■□□□□ 0.27
VPS35-202ENST00000561713 OR52E4Q8NGH9 312 aa16.72■□□□□ 0.27
VPS35-202ENST00000561713 PIGXQ8TBF5 258 aa16.72■□□□□ 0.27
VPS35-202ENST00000561713 HS6ST2Q96MM7 605 aa16.72■□□□□ 0.27
VPS35-202ENST00000561713 TRNT1Q96Q11 434 aaKnown RBP16.72■□□□□ 0.27
VPS35-202ENST00000561713 TRAF4Q9BUZ4 470 aaPredicted RBP16.72■□□□□ 0.27
VPS35-202ENST00000561713 OSGIN1Q9UJX0 560 aa16.72■□□□□ 0.27
VPS35-202ENST00000561713 TMED7Q9Y3B3 224 aa16.72■□□□□ 0.27
VPS35-202ENST00000561713 OR5H1A6NKK0 313 aa16.71■□□□□ 0.27
VPS35-202ENST00000561713 HDAC3O15379 428 aa16.71■□□□□ 0.27
VPS35-202ENST00000561713 SNNO75324 88 aaPredicted RBP16.71■□□□□ 0.27
VPS35-202ENST00000561713 GUSBP08236 651 aa16.71■□□□□ 0.27
VPS35-202ENST00000561713 NR2F1P10589 423 aa16.71■□□□□ 0.27
VPS35-202ENST00000561713 IMPDH2P12268 514 aa16.71■□□□□ 0.27
VPS35-202ENST00000561713 RPS4Y1P22090 263 aaKnown RBP16.71■□□□□ 0.27
VPS35-202ENST00000561713 TACR3P29371 465 aa16.71■□□□□ 0.27
VPS35-202ENST00000561713 SLC9B1Q4ZJI4 515 aa16.71■□□□□ 0.27
VPS35-202ENST00000561713 FBXW9Q5XUX1 488 aa16.71■□□□□ 0.27
VPS35-202ENST00000561713 ZNF836Q6ZNA1 936 aa16.71■□□□□ 0.27
VPS35-202ENST00000561713 SPATA19Q7Z5L4 167 aa16.71■□□□□ 0.27
VPS35-202ENST00000561713 VRK2Q86Y07 508 aa16.71■□□□□ 0.27
VPS35-202ENST00000561713 KIRREL3Q8IZU9 778 aa16.71■□□□□ 0.27
VPS35-202ENST00000561713 TRIML2Q8N7C3 387 aa16.71■□□□□ 0.27
VPS35-202ENST00000561713 OR9I1Q8NGQ6 314 aa16.71■□□□□ 0.27
VPS35-202ENST00000561713 OIT3Q8WWZ8 545 aa16.71■□□□□ 0.27
VPS35-202ENST00000561713 AURKBQ96GD4 344 aaPredicted RBP16.71■□□□□ 0.27
VPS35-202ENST00000561713 ZBTB18Q99592 522 aa16.71■□□□□ 0.27
VPS35-202ENST00000561713 RLIMQ9NVW2 624 aa16.71■□□□□ 0.27
VPS35-202ENST00000561713 HDGFL3Q9Y3E1 203 aa16.71■□□□□ 0.27
VPS35-202ENST00000561713 IGHV4-30-2A0A087WSY4 118 aa16.7■□□□□ 0.26
VPS35-202ENST00000561713 CIB4A0PJX0 185 aa16.7■□□□□ 0.26
VPS35-202ENST00000561713 CCT8L1PA6NM43 557 aa16.7■□□□□ 0.26
VPS35-202ENST00000561713 RFXANKO14593 260 aa16.7■□□□□ 0.26
VPS35-202ENST00000561713 SSX4O60224 188 aa16.7■□□□□ 0.26
VPS35-202ENST00000561713 ITGA5P08648 1049 aa16.7■□□□□ 0.26
VPS35-202ENST00000561713 GKN3PP0CG01 181 aa16.7■□□□□ 0.26
VPS35-202ENST00000561713 ETFAP13804 333 aa16.7■□□□□ 0.26
VPS35-202ENST00000561713 POLR2HP52434 150 aaKnown RBP16.7■□□□□ 0.26
VPS35-202ENST00000561713 TIMM23BQ5SRD1 257 aa16.7■□□□□ 0.26
VPS35-202ENST00000561713 LRRC74BQ6ZQY2 392 aa16.7■□□□□ 0.26
VPS35-202ENST00000561713 PIAS4Q8N2W9 510 aaPredicted RBP16.7■□□□□ 0.26
VPS35-202ENST00000561713 MUCL1Q96DR8 90 aa16.7■□□□□ 0.26
VPS35-202ENST00000561713 ALG2Q9H553 416 aa16.7■□□□□ 0.26
VPS35-202ENST00000561713 CISD1Q9NZ45 108 aaKnown RBP16.7■□□□□ 0.26
VPS35-202ENST00000561713 TMEM181Q9P2C4 612 aa16.7■□□□□ 0.26
VPS35-202ENST00000561713 ZNF500O60304 480 aaPredicted RBP16.69■□□□□ 0.26
VPS35-202ENST00000561713 BCHEP06276 602 aa16.69■□□□□ 0.26
VPS35-202ENST00000561713 FAM157CP0CG43 387 aa16.69■□□□□ 0.26
VPS35-202ENST00000561713 IL7RP16871 459 aa16.69■□□□□ 0.26
VPS35-202ENST00000561713 MVDP53602 400 aa16.69■□□□□ 0.26
VPS35-202ENST00000561713 SLC16A1P53985 500 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms