RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 REXO5Q96IC2 774 aaKnown RBP8.38□□□□□ -1.07
LDLR-211ENST00000560173 SPOCK3Q9BQ16 436 aa8.38□□□□□ -1.07
LDLR-211ENST00000560173 ECSITQ9BQ95 431 aa8.38□□□□□ -1.07
LDLR-211ENST00000560173 ADAM19Q9H013 955 aa8.38□□□□□ -1.07
LDLR-211ENST00000560173 ENKD1Q9H0I2 346 aa8.38□□□□□ -1.07
LDLR-211ENST00000560173 TIGARQ9NQ88 270 aa8.38□□□□□ -1.07
LDLR-211ENST00000560173 SERINC1Q9NRX5 453 aa8.38□□□□□ -1.07
LDLR-211ENST00000560173 JKAMPQ9P055 326 aa8.38□□□□□ -1.07
LDLR-211ENST00000560173 OSGIN1Q9UJX0 560 aa8.38□□□□□ -1.07
LDLR-211ENST00000560173 MCTS1Q9ULC4 181 aaKnown RBP8.38□□□□□ -1.07
LDLR-211ENST00000560173 AP3M1Q9Y2T2 418 aa8.38□□□□□ -1.07
LDLR-211ENST00000560173 SPIN1Q9Y657 262 aaPredicted RBP8.38□□□□□ -1.07
LDLR-211ENST00000560173 TACC2O95359 2948 aa8.38□□□□□ -1.07
LDLR-211ENST00000560173 SETD2Q9BYW2 2564 aaPredicted RBP8.38□□□□□ -1.07
LDLR-211ENST00000560173 TMED7-TICAM2A0A0A6YYA0 188 aa8.37□□□□□ -1.07
LDLR-211ENST00000560173 EEF1E1-BLOC1S5C9J1V9 151 aa8.37□□□□□ -1.07
LDLR-211ENST00000560173 EEF1E1O43324 174 aaKnown RBP8.37□□□□□ -1.07
LDLR-211ENST00000560173 ZNF208O43345 1280 aa8.37□□□□□ -1.07
LDLR-211ENST00000560173 SS18L1O75177 396 aaPredicted RBP8.37□□□□□ -1.07
LDLR-211ENST00000560173 MFN2O95140 757 aa8.37□□□□□ -1.07
LDLR-211ENST00000560173 COX6B1P14854 86 aa8.37□□□□□ -1.07
LDLR-211ENST00000560173 FKBP2P26885 142 aaKnown RBP8.37□□□□□ -1.07
LDLR-211ENST00000560173 KIR2DL2P43627 348 aaPredicted RBP8.37□□□□□ -1.07
LDLR-211ENST00000560173 CRYBA2P53672 197 aa8.37□□□□□ -1.07
LDLR-211ENST00000560173 RAC3P60763 192 aa8.37□□□□□ -1.07
LDLR-211ENST00000560173 ACTR3P61158 418 aa8.37□□□□□ -1.07
LDLR-211ENST00000560173 COPZ1P61923 177 aa8.37□□□□□ -1.07
LDLR-211ENST00000560173 SLC25A3Q00325 362 aa8.37□□□□□ -1.07
LDLR-211ENST00000560173 HOXC5Q00444 222 aa8.37□□□□□ -1.07
LDLR-211ENST00000560173 SAMD4BQ5PRF9 694 aaKnown RBP8.37□□□□□ -1.07
LDLR-211ENST00000560173 INTS11Q5TA45 600 aaKnown RBP8.37□□□□□ -1.07
LDLR-211ENST00000560173 C1orf146Q5VVC0 180 aa8.37□□□□□ -1.07
LDLR-211ENST00000560173 WBP2NLQ6ICG8 309 aa8.37□□□□□ -1.07
LDLR-211ENST00000560173 PPP4R4Q6NUP7 873 aa8.37□□□□□ -1.07
LDLR-211ENST00000560173 C8orf82Q6P1X6 216 aaPredicted RBP8.37□□□□□ -1.07
LDLR-211ENST00000560173 ERICH5Q6P6B1 374 aa8.37□□□□□ -1.07
LDLR-211ENST00000560173 VWA1Q6PCB0 445 aa8.37□□□□□ -1.07
LDLR-211ENST00000560173 PGM2L1Q6PCE3 622 aa8.37□□□□□ -1.07
LDLR-211ENST00000560173 CCDC80Q76M96 950 aa8.37□□□□□ -1.07
LDLR-211ENST00000560173 PATL1Q86TB9 770 aaKnown RBP8.37□□□□□ -1.07
LDLR-211ENST00000560173 CADM2Q8N3J6 435 aa8.37□□□□□ -1.07
LDLR-211ENST00000560173 CNEP1R1Q8N9A8 125 aa8.37□□□□□ -1.07
LDLR-211ENST00000560173 BHLHE22Q8NFJ8 381 aaPredicted RBP8.37□□□□□ -1.07
LDLR-211ENST00000560173 RNF128Q8TEB7 428 aa8.37□□□□□ -1.07
LDLR-211ENST00000560173 RNASE6Q93091 150 aaKnown RBP8.37□□□□□ -1.07
LDLR-211ENST00000560173 CPNE4Q96A23 557 aaPredicted RBP8.37□□□□□ -1.07
LDLR-211ENST00000560173 C3orf49Q96BT1 292 aa8.37□□□□□ -1.07
LDLR-211ENST00000560173 TAMM41Q96BW9 452 aa8.37□□□□□ -1.07
LDLR-211ENST00000560173 STARD4Q96DR4 205 aa8.37□□□□□ -1.07
LDLR-211ENST00000560173 ZNF583Q96ND8 569 aa8.37□□□□□ -1.07
LDLR-211ENST00000560173 OR5B2Q96R09 309 aa8.37□□□□□ -1.07
LDLR-211ENST00000560173 PRRG4Q9BZD6 226 aa8.37□□□□□ -1.07
LDLR-211ENST00000560173 OR11A1Q9GZK7 315 aa8.37□□□□□ -1.07
LDLR-211ENST00000560173 PIGMQ9H3S5 423 aa8.37□□□□□ -1.07
LDLR-211ENST00000560173 PIF1Q9H611 641 aa8.37□□□□□ -1.07
LDLR-211ENST00000560173 RNPEPL1Q9HAU8 725 aa8.37□□□□□ -1.07
LDLR-211ENST00000560173 SPAG4Q9NPE6 437 aa8.37□□□□□ -1.07
LDLR-211ENST00000560173 CMTM6Q9NX76 183 aa8.37□□□□□ -1.07
LDLR-211ENST00000560173 PACSIN3Q9UKS6 424 aa8.37□□□□□ -1.07
LDLR-211ENST00000560173 USP22Q9UPT9 525 aa8.37□□□□□ -1.07
LDLR-211ENST00000560173 TMED7Q9Y3B3 224 aa8.37□□□□□ -1.07
LDLR-211ENST00000560173 HDGFL3Q9Y3E1 203 aa8.37□□□□□ -1.07
LDLR-211ENST00000560173 ZFHX3Q15911 3703 aa8.37□□□□□ -1.07
LDLR-211ENST00000560173 HCFC1P51610 2035 aa8.37□□□□□ -1.07
LDLR-211ENST00000560173 TMEM72A0PK05 275 aa8.36□□□□□ -1.07
LDLR-211ENST00000560173 ZC3H12DA2A288 527 aaKnown RBP8.36□□□□□ -1.07
LDLR-211ENST00000560173 FAM220BPB1ANY3 271 aa8.36□□□□□ -1.07
LDLR-211ENST00000560173 TMEM229AB2RXF0 380 aa8.36□□□□□ -1.07
LDLR-211ENST00000560173 M0QX08 132 aa8.36□□□□□ -1.07
LDLR-211ENST00000560173 SYT5O00445 386 aa8.36□□□□□ -1.07
LDLR-211ENST00000560173 SMAD9O15198 467 aaKnown RBP8.36□□□□□ -1.07
LDLR-211ENST00000560173 HNRNPRO43390 633 aaKnown RBP8.36□□□□□ -1.07
LDLR-211ENST00000560173 OPN1SWP03999 348 aa8.36□□□□□ -1.07
LDLR-211ENST00000560173 TFPIP10646 304 aa8.36□□□□□ -1.07
LDLR-211ENST00000560173 KLK2P20151 261 aa8.36□□□□□ -1.07
LDLR-211ENST00000560173 CCNA2P20248 432 aa8.36□□□□□ -1.07
LDLR-211ENST00000560173 CD247P20963 164 aa8.36□□□□□ -1.07
LDLR-211ENST00000560173 ENPP1P22413 925 aa8.36□□□□□ -1.07
LDLR-211ENST00000560173 HTR2AP28223 471 aa8.36□□□□□ -1.07
LDLR-211ENST00000560173 CLK1P49759 484 aaKnown RBP8.36□□□□□ -1.07
LDLR-211ENST00000560173 DIO1P49895 249 aa8.36□□□□□ -1.07
LDLR-211ENST00000560173 MAP2K6P52564 334 aa8.36□□□□□ -1.07
LDLR-211ENST00000560173 SLC7A2P52569 658 aa8.36□□□□□ -1.07
LDLR-211ENST00000560173 RGS8P57771 180 aaPredicted RBP8.36□□□□□ -1.07
LDLR-211ENST00000560173 SIRPAP78324 504 aa8.36□□□□□ -1.07
LDLR-211ENST00000560173 MYBPHQ13203 477 aa8.36□□□□□ -1.07
LDLR-211ENST00000560173 VEZF1Q14119 521 aa8.36□□□□□ -1.07
LDLR-211ENST00000560173 ZFP1Q6P2D0 407 aa8.36□□□□□ -1.07
LDLR-211ENST00000560173 MEX3BQ6ZN04 569 aaKnown RBP8.36□□□□□ -1.07
LDLR-211ENST00000560173 TMPPEQ6ZT21 453 aa8.36□□□□□ -1.07
LDLR-211ENST00000560173 FCRLAQ7L513 359 aa8.36□□□□□ -1.07
LDLR-211ENST00000560173 FAM214BQ7L5A3 538 aa8.36□□□□□ -1.07
LDLR-211ENST00000560173 BTLAQ7Z6A9 289 aa8.36□□□□□ -1.07
LDLR-211ENST00000560173 ATG4DQ86TL0 474 aaPredicted RBP8.36□□□□□ -1.07
LDLR-211ENST00000560173 SLC15A3Q8IY34 581 aa8.36□□□□□ -1.07
LDLR-211ENST00000560173 SMYD1Q8NB12 490 aa8.36□□□□□ -1.07
LDLR-211ENST00000560173 GPR32P1Q8NGA4 272 aa8.36□□□□□ -1.07
LDLR-211ENST00000560173 ABHD3Q8WU67 409 aa8.36□□□□□ -1.07
LDLR-211ENST00000560173 ROBO4Q8WZ75 1007 aa8.36□□□□□ -1.07
LDLR-211ENST00000560173 POP5Q969H6 163 aaKnown RBP8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 129.4 ms