RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 TRIP10Q15642 601 aa7.8□□□□□ -1.16
USP3-208ENST00000558285 TMEM44Q2T9K0 475 aa7.8□□□□□ -1.16
USP3-208ENST00000558285 DCST1Q5T197 706 aa7.8□□□□□ -1.16
USP3-208ENST00000558285 GRINAQ7Z429 371 aa7.8□□□□□ -1.16
USP3-208ENST00000558285 ADGRE4PQ86SQ3 457 aa7.8□□□□□ -1.16
USP3-208ENST00000558285 JAZF1Q86VZ6 243 aa7.8□□□□□ -1.16
USP3-208ENST00000558285 ANKRD13BQ86YJ7 626 aa7.8□□□□□ -1.16
USP3-208ENST00000558285 SLC30A8Q8IWU4 369 aa7.8□□□□□ -1.16
USP3-208ENST00000558285 RPRMLQ8N4K4 120 aa7.8□□□□□ -1.16
USP3-208ENST00000558285 PCYOX1LQ8NBM8 494 aa7.8□□□□□ -1.16
USP3-208ENST00000558285 RBM15BQ8NDT2 890 aaKnown RBP7.8□□□□□ -1.16
USP3-208ENST00000558285 OR6K3Q8NGY3 331 aa7.8□□□□□ -1.16
USP3-208ENST00000558285 BBS10Q8TAM1 723 aa7.8□□□□□ -1.16
USP3-208ENST00000558285 RAB8BQ92930 207 aa7.8□□□□□ -1.16
USP3-208ENST00000558285 OR52B2Q96RD2 323 aa7.8□□□□□ -1.16
USP3-208ENST00000558285 GRIP2Q9C0E4 1043 aa7.8□□□□□ -1.16
USP3-208ENST00000558285 KLHL28Q9NXS3 571 aa7.8□□□□□ -1.16
USP3-208ENST00000558285 EMC3Q9P0I2 261 aa7.8□□□□□ -1.16
USP3-208ENST00000558285 KLHL9Q9P2J3 617 aa7.8□□□□□ -1.16
USP3-208ENST00000558285 NIPSNAP3AQ9UFN0 247 aaPredicted RBP7.8□□□□□ -1.16
USP3-208ENST00000558285 LEF1Q9UJU2 399 aaPredicted RBP7.8□□□□□ -1.16
USP3-208ENST00000558285 ICAM5Q9UMF0 924 aa7.8□□□□□ -1.16
USP3-208ENST00000558285 DNAJC13O75165 2243 aa7.8□□□□□ -1.16
USP3-208ENST00000558285 ZNF407Q9C0G0 2248 aa7.8□□□□□ -1.16
USP3-208ENST00000558285 EXPH5Q8NEV8 1989 aa7.8□□□□□ -1.16
USP3-208ENST00000558285 A0A0G2JND7 137 aa7.79□□□□□ -1.16
USP3-208ENST00000558285 A0A1W2PNV4 684 aa7.79□□□□□ -1.16
USP3-208ENST00000558285 AGAP5A6NIR3 686 aa7.79□□□□□ -1.16
USP3-208ENST00000558285 CLIC1O00299 241 aa7.79□□□□□ -1.16
USP3-208ENST00000558285 HMGN4O00479 90 aa7.79□□□□□ -1.16
USP3-208ENST00000558285 DNAJA2O60884 412 aa7.79□□□□□ -1.16
USP3-208ENST00000558285 UGT2B17O75795 530 aa7.79□□□□□ -1.16
USP3-208ENST00000558285 GSNP06396 782 aa7.79□□□□□ -1.16
USP3-208ENST00000558285 THBS1P07996 1170 aa7.79□□□□□ -1.16
USP3-208ENST00000558285 CD8BP10966 210 aa7.79□□□□□ -1.16
USP3-208ENST00000558285 PCSK6P29122 969 aa7.79□□□□□ -1.16
USP3-208ENST00000558285 CPOXP36551 454 aa7.79□□□□□ -1.16
USP3-208ENST00000558285 ZNF136P52737 540 aa7.79□□□□□ -1.16
USP3-208ENST00000558285 MERTKQ12866 999 aa7.79□□□□□ -1.16
USP3-208ENST00000558285 QPRTQ15274 297 aa7.79□□□□□ -1.16
USP3-208ENST00000558285 CD226Q15762 336 aa7.79□□□□□ -1.16
USP3-208ENST00000558285 MOGQ16653 247 aa7.79□□□□□ -1.16
USP3-208ENST00000558285 RGS21Q2M5E4 152 aa7.79□□□□□ -1.16
USP3-208ENST00000558285 AGKQ53H12 422 aa7.79□□□□□ -1.16
USP3-208ENST00000558285 SMUG1Q53HV7 270 aa7.79□□□□□ -1.16
USP3-208ENST00000558285 SLC25A53Q5H9E4 307 aa7.79□□□□□ -1.16
USP3-208ENST00000558285 TYW3Q6IPR3 259 aaKnown RBP7.79□□□□□ -1.16
USP3-208ENST00000558285 PGM2L1Q6PCE3 622 aa7.79□□□□□ -1.16
USP3-208ENST00000558285 APOOLQ6UXV4 268 aa7.79□□□□□ -1.16
USP3-208ENST00000558285 LINC00299Q6ZSB3 139 aa7.79□□□□□ -1.16
USP3-208ENST00000558285 BEND4Q6ZU67 534 aa7.79□□□□□ -1.16
USP3-208ENST00000558285 FAM214BQ7L5A3 538 aa7.79□□□□□ -1.16
USP3-208ENST00000558285 C9orf106Q8NAJ2 232 aa7.79□□□□□ -1.16
USP3-208ENST00000558285 OR10D3Q8NH80 312 aa7.79□□□□□ -1.16
USP3-208ENST00000558285 FBXO27Q8NI29 283 aa7.79□□□□□ -1.16
USP3-208ENST00000558285 GPR119Q8TDV5 335 aa7.79□□□□□ -1.16
USP3-208ENST00000558285 ZFP90Q8TF47 636 aa7.79□□□□□ -1.16
USP3-208ENST00000558285 TRUB1Q8WWH5 349 aaKnown RBP7.79□□□□□ -1.16
USP3-208ENST00000558285 DDIT4LQ96D03 193 aa7.79□□□□□ -1.16
USP3-208ENST00000558285 PLEKHA8Q96JA3 519 aa7.79□□□□□ -1.16
USP3-208ENST00000558285 DACH2Q96NX9 599 aa7.79□□□□□ -1.16
USP3-208ENST00000558285 ZNF607Q96SK3 696 aa7.79□□□□□ -1.16
USP3-208ENST00000558285 TREX2Q9BQ50 279 aaPredicted RBP7.79□□□□□ -1.16
USP3-208ENST00000558285 THTPAQ9BU02 230 aa7.79□□□□□ -1.16
USP3-208ENST00000558285 THUMPD3Q9BV44 507 aaKnown RBP7.79□□□□□ -1.16
USP3-208ENST00000558285 NDEL1Q9GZM8 345 aa7.79□□□□□ -1.16
USP3-208ENST00000558285 RNF122Q9H9V4 155 aa7.79□□□□□ -1.16
USP3-208ENST00000558285 NGBQ9NPG2 151 aa7.79□□□□□ -1.16
USP3-208ENST00000558285 ACER3Q9NUN7 267 aa7.79□□□□□ -1.16
USP3-208ENST00000558285 CCDC167Q9P0B6 97 aa7.79□□□□□ -1.16
USP3-208ENST00000558285 NDUFAF1Q9Y375 327 aa7.79□□□□□ -1.16
USP3-208ENST00000558285 AP4S1Q9Y587 144 aa7.79□□□□□ -1.16
USP3-208ENST00000558285 PHF3Q92576 2039 aaKnown RBP7.79□□□□□ -1.16
USP3-208ENST00000558285 NCOA6Q14686 2063 aaPredicted RBP7.78□□□□□ -1.16
USP3-208ENST00000558285 A0A1W2PP18 115 aa7.78□□□□□ -1.16
USP3-208ENST00000558285 TRIM64CA6NLI5 447 aa7.78□□□□□ -1.16
USP3-208ENST00000558285 FAAHO00519 579 aa7.78□□□□□ -1.16
USP3-208ENST00000558285 RGS13O14921 159 aa7.78□□□□□ -1.16
USP3-208ENST00000558285 MTRF1O75570 445 aaKnown RBP7.78□□□□□ -1.16
USP3-208ENST00000558285 SULT1C4O75897 302 aa7.78□□□□□ -1.16
USP3-208ENST00000558285 PRKD3O94806 890 aa7.78□□□□□ -1.16
USP3-208ENST00000558285 TFPIP10646 304 aa7.78□□□□□ -1.16
USP3-208ENST00000558285 NID1P14543 1247 aa7.78□□□□□ -1.16
USP3-208ENST00000558285 PRKCAP17252 672 aa7.78□□□□□ -1.16
USP3-208ENST00000558285 IGFBP2P18065 325 aa7.78□□□□□ -1.16
USP3-208ENST00000558285 PEX2P28328 305 aa7.78□□□□□ -1.16
USP3-208ENST00000558285 SFTPDP35247 375 aa7.78□□□□□ -1.16
USP3-208ENST00000558285 ENTPD1P49961 510 aa7.78□□□□□ -1.16
USP3-208ENST00000558285 TFF3Q07654 80 aa7.78□□□□□ -1.16
USP3-208ENST00000558285 FOXF1Q12946 379 aa7.78□□□□□ -1.16
USP3-208ENST00000558285 SKP2Q13309 424 aa7.78□□□□□ -1.16
USP3-208ENST00000558285 TMEM176BQ3YBM2 270 aaPredicted RBP7.78□□□□□ -1.16
USP3-208ENST00000558285 GCNT6Q5T4J0 391 aa7.78□□□□□ -1.16
USP3-208ENST00000558285 GCNT2Q8N0V5 402 aa7.78□□□□□ -1.16
USP3-208ENST00000558285 CENPSQ8N2Z9 138 aa7.78□□□□□ -1.16
USP3-208ENST00000558285 ACBD4Q8NC06 268 aa7.78□□□□□ -1.16
USP3-208ENST00000558285 OSTF1Q92882 214 aa7.78□□□□□ -1.16
USP3-208ENST00000558285 MED30Q96HR3 178 aa7.78□□□□□ -1.16
USP3-208ENST00000558285 MARK4Q96L34 752 aa7.78□□□□□ -1.16
USP3-208ENST00000558285 NAA11Q9BSU3 229 aaPredicted RBP7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms