RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 NLGN4XQ8N0W4 816 aa11.62□□□□□ -0.55
SHMT2-229ENST00000557348 SLC34A3Q8N130 599 aa11.62□□□□□ -0.55
SHMT2-229ENST00000557348 OR8H2Q8N162 312 aa11.62□□□□□ -0.55
SHMT2-229ENST00000557348 AGBL5Q8NDL9 886 aa11.62□□□□□ -0.55
SHMT2-229ENST00000557348 FANK1Q8TC84 345 aa11.62□□□□□ -0.55
SHMT2-229ENST00000557348 STT3BQ8TCJ2 826 aa11.62□□□□□ -0.55
SHMT2-229ENST00000557348 AP3S1Q92572 193 aa11.62□□□□□ -0.55
SHMT2-229ENST00000557348 ADIPOR1Q96A54 375 aa11.62□□□□□ -0.55
SHMT2-229ENST00000557348 BPIFA2Q96DR5 249 aa11.62□□□□□ -0.55
SHMT2-229ENST00000557348 LRR1Q96L50 414 aa11.62□□□□□ -0.55
SHMT2-229ENST00000557348 GPA33Q99795 319 aa11.62□□□□□ -0.55
SHMT2-229ENST00000557348 MED18Q9BUE0 208 aa11.62□□□□□ -0.55
SHMT2-229ENST00000557348 PRR14Q9BWN1 585 aa11.62□□□□□ -0.55
SHMT2-229ENST00000557348 TAPBPLQ9BX59 468 aa11.62□□□□□ -0.55
SHMT2-229ENST00000557348 SRRQ9GZT4 340 aa11.62□□□□□ -0.55
SHMT2-229ENST00000557348 SLC26A1Q9H2B4 701 aa11.62□□□□□ -0.55
SHMT2-229ENST00000557348 RNF121Q9H920 327 aa11.62□□□□□ -0.55
SHMT2-229ENST00000557348 HHATLQ9HCP6 504 aa11.62□□□□□ -0.55
SHMT2-229ENST00000557348 RYDENQ9NUL5 291 aaKnown RBP11.62□□□□□ -0.55
SHMT2-229ENST00000557348 MRPS18AQ9NVS2 196 aaKnown RBP11.62□□□□□ -0.55
SHMT2-229ENST00000557348 NUP210LQ5VU65 1888 aa11.62□□□□□ -0.55
SHMT2-229ENST00000557348 KDM4EB2RXH2 506 aaPredicted RBP11.61□□□□□ -0.55
SHMT2-229ENST00000557348 NTN3O00634 580 aaPredicted RBP11.61□□□□□ -0.55
SHMT2-229ENST00000557348 TLX2O43763 284 aaPredicted RBP11.61□□□□□ -0.55
SHMT2-229ENST00000557348 NOS1APO75052 506 aaPredicted RBP11.61□□□□□ -0.55
SHMT2-229ENST00000557348 CPNE3O75131 537 aaKnown RBP11.61□□□□□ -0.55
SHMT2-229ENST00000557348 ZNF780AO75290 641 aaPredicted RBP11.61□□□□□ -0.55
SHMT2-229ENST00000557348 SCG5P05408 212 aa11.61□□□□□ -0.55
SHMT2-229ENST00000557348 IFI30P13284 250 aa11.61□□□□□ -0.55
SHMT2-229ENST00000557348 PSMA1P25786 263 aaKnown RBP11.61□□□□□ -0.55
SHMT2-229ENST00000557348 GPR4P46093 362 aa11.61□□□□□ -0.55
SHMT2-229ENST00000557348 SLC9A3P48764 834 aa11.61□□□□□ -0.55
SHMT2-229ENST00000557348 PNLIPRP2P54317 469 aa11.61□□□□□ -0.55
SHMT2-229ENST00000557348 NRG3P56975 720 aa11.61□□□□□ -0.55
SHMT2-229ENST00000557348 ZNF91Q05481 1191 aa11.61□□□□□ -0.55
SHMT2-229ENST00000557348 QPRTQ15274 297 aa11.61□□□□□ -0.55
SHMT2-229ENST00000557348 SYT14P1Q58G82 188 aa11.61□□□□□ -0.55
SHMT2-229ENST00000557348 CEP78Q5JTW2 689 aa11.61□□□□□ -0.55
SHMT2-229ENST00000557348 WBP2NLQ6ICG8 309 aa11.61□□□□□ -0.55
SHMT2-229ENST00000557348 ZC3H14Q6PJT7 736 aaKnown RBP11.61□□□□□ -0.55
SHMT2-229ENST00000557348 OVCH1Q7RTY7 1134 aa11.61□□□□□ -0.55
SHMT2-229ENST00000557348 TMPRSS9Q7Z410 1059 aa11.61□□□□□ -0.55
SHMT2-229ENST00000557348 CDH24Q86UP0 819 aa11.61□□□□□ -0.55
SHMT2-229ENST00000557348 GID4Q8IVV7 300 aa11.61□□□□□ -0.55
SHMT2-229ENST00000557348 DUSP18Q8NEJ0 188 aa11.61□□□□□ -0.55
SHMT2-229ENST00000557348 ASB15Q8WXK1 588 aa11.61□□□□□ -0.55
SHMT2-229ENST00000557348 HYLS1Q96M11 299 aa11.61□□□□□ -0.55
SHMT2-229ENST00000557348 MND1Q9BWT6 205 aa11.61□□□□□ -0.55
SHMT2-229ENST00000557348 NXF5Q9H1B4 397 aaKnown RBP11.61□□□□□ -0.55
SHMT2-229ENST00000557348 EGLN3Q9H6Z9 239 aa11.61□□□□□ -0.55
SHMT2-229ENST00000557348 AKAP7Q9P0M2 348 aaPredicted RBP11.61□□□□□ -0.55
SHMT2-229ENST00000557348 DIMT1Q9UNQ2 313 aaKnown RBP11.61□□□□□ -0.55
SHMT2-229ENST00000557348 NTNG1Q9Y2I2 539 aa11.61□□□□□ -0.55
SHMT2-229ENST00000557348 FAM86C2PA6NEL3 165 aa11.6□□□□□ -0.55
SHMT2-229ENST00000557348 ZNF670-ZNF695F2Z2N8 137 aa11.6□□□□□ -0.55
SHMT2-229ENST00000557348 KHNYNO15037 678 aaKnown RBP11.6□□□□□ -0.55
SHMT2-229ENST00000557348 FLRT2O43155 660 aa11.6□□□□□ -0.55
SHMT2-229ENST00000557348 PRKYO43930 277 aa11.6□□□□□ -0.55
SHMT2-229ENST00000557348 RAB36O95755 333 aa11.6□□□□□ -0.55
SHMT2-229ENST00000557348 SP9P0CG40 484 aa11.6□□□□□ -0.55
SHMT2-229ENST00000557348 MYL9P24844 172 aa11.6□□□□□ -0.55
SHMT2-229ENST00000557348 C21orf33P30042 268 aaPredicted RBP11.6□□□□□ -0.55
SHMT2-229ENST00000557348 RFX2P48378 723 aa11.6□□□□□ -0.55
SHMT2-229ENST00000557348 RIN1Q13671 783 aa11.6□□□□□ -0.55
SHMT2-229ENST00000557348 C3orf38Q5JPI3 329 aa11.6□□□□□ -0.55
SHMT2-229ENST00000557348 PHF19Q5T6S3 580 aa11.6□□□□□ -0.55
SHMT2-229ENST00000557348 FNDC7Q5VTL7 733 aa11.6□□□□□ -0.55
SHMT2-229ENST00000557348 ACSM5Q6NUN0 579 aa11.6□□□□□ -0.55
SHMT2-229ENST00000557348 NUP54Q7Z3B4 507 aa11.6□□□□□ -0.55
SHMT2-229ENST00000557348 MISPQ8IVT2 679 aa11.6□□□□□ -0.55
SHMT2-229ENST00000557348 IQCF1Q8N6M8 205 aa11.6□□□□□ -0.55
SHMT2-229ENST00000557348 OR8K3Q8NH51 312 aa11.6□□□□□ -0.55
SHMT2-229ENST00000557348 ZNF582Q96NG8 517 aaPredicted RBP11.6□□□□□ -0.55
SHMT2-229ENST00000557348 GAL3ST4Q96RP7 486 aa11.6□□□□□ -0.55
SHMT2-229ENST00000557348 MGLLQ99685 303 aa11.6□□□□□ -0.55
SHMT2-229ENST00000557348 RHNO1Q9BSD3 238 aa11.6□□□□□ -0.55
SHMT2-229ENST00000557348 PLA2G12AQ9BZM1 189 aa11.6□□□□□ -0.55
SHMT2-229ENST00000557348 WWTR1Q9GZV5 400 aa11.6□□□□□ -0.55
SHMT2-229ENST00000557348 OR52D1Q9H346 318 aa11.6□□□□□ -0.55
SHMT2-229ENST00000557348 WDR54Q9H977 334 aa11.6□□□□□ -0.55
SHMT2-229ENST00000557348 AMBNQ9NP70 447 aa11.6□□□□□ -0.55
SHMT2-229ENST00000557348 DNAJC27Q9NZQ0 273 aa11.6□□□□□ -0.55
SHMT2-229ENST00000557348 H2AFY2Q9P0M6 372 aaPredicted RBP11.6□□□□□ -0.55
SHMT2-229ENST00000557348 TNFRSF10DQ9UBN6 386 aa11.6□□□□□ -0.55
SHMT2-229ENST00000557348 CTSFQ9UBX1 484 aa11.6□□□□□ -0.55
SHMT2-229ENST00000557348 PPIEQ9UNP9 301 aaKnown RBP11.6□□□□□ -0.55
SHMT2-229ENST00000557348 CMAHPQ9Y471 501 aa11.6□□□□□ -0.55
SHMT2-229ENST00000557348 PCDHGB7Q9Y5F8 929 aa11.6□□□□□ -0.55
SHMT2-229ENST00000557348 A0A087WUJ7 227 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 LINC00862A6NCI5 91 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 OR2W5A6NFC9 320 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 VSTM2BA6NLU5 285 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 A8MUA0 341 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 M0R129 80 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 GTPBP1O00178 669 aaKnown RBP11.59□□□□□ -0.55
SHMT2-229ENST00000557348 SURF4O15260 269 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 ZNF264O43296 627 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 EIF4E2O60573 245 aaKnown RBP11.59□□□□□ -0.55
SHMT2-229ENST00000557348 ALOX12BO75342 701 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 UTS2O95399 124 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms