RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 MYBPHQ13203 477 aa11.51□□□□□ -0.57
SHMT2-227ENST00000557269 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.51□□□□□ -0.57
SHMT2-227ENST00000557269 EIF2S3LQ2VIR3 472 aaKnown RBP11.51□□□□□ -0.57
SHMT2-227ENST00000557269 SWT1Q5T5J6 900 aaKnown RBP11.51□□□□□ -0.57
SHMT2-227ENST00000557269 NCCRP1Q6ZVX7 275 aaPredicted RBP11.51□□□□□ -0.57
SHMT2-227ENST00000557269 OFCC1Q8IZS5 231 aa11.51□□□□□ -0.57
SHMT2-227ENST00000557269 PAPD5Q8NDF8 572 aaKnown RBP11.51□□□□□ -0.57
SHMT2-227ENST00000557269 OR10D3Q8NH80 312 aa11.51□□□□□ -0.57
SHMT2-227ENST00000557269 OR2V1Q8NHB1 315 aa11.51□□□□□ -0.57
SHMT2-227ENST00000557269 RAB3IPQ96QF0 476 aaPredicted RBP11.51□□□□□ -0.57
SHMT2-227ENST00000557269 ZNF426Q9BUY5 554 aa11.51□□□□□ -0.57
SHMT2-227ENST00000557269 PTDSS2Q9BVG9 487 aa11.51□□□□□ -0.57
SHMT2-227ENST00000557269 FNDC11Q9BVV2 318 aa11.51□□□□□ -0.57
SHMT2-227ENST00000557269 SRXN1Q9BYN0 137 aa11.51□□□□□ -0.57
SHMT2-227ENST00000557269 POLR2J2Q9GZM3 115 aaKnown RBP11.51□□□□□ -0.57
SHMT2-227ENST00000557269 POLR2J3Q9H1A7 115 aaKnown RBP11.51□□□□□ -0.57
SHMT2-227ENST00000557269 CCM2LQ9NUG4 571 aaPredicted RBP11.51□□□□□ -0.57
SHMT2-227ENST00000557269 VNN3Q9NY84 501 aa11.51□□□□□ -0.57
SHMT2-227ENST00000557269 SH3BGRL2Q9UJC5 107 aa11.51□□□□□ -0.57
SHMT2-227ENST00000557269 FAM32AQ9Y421 112 aaKnown RBP11.51□□□□□ -0.57
SHMT2-227ENST00000557269 TESMINQ9Y4I5 508 aa11.51□□□□□ -0.57
SHMT2-227ENST00000557269 FAM215AQ9Y5M1 114 aa11.51□□□□□ -0.57
SHMT2-227ENST00000557269 TRBV4-1A0A0J9YWV2 114 aa11.5□□□□□ -0.57
SHMT2-227ENST00000557269 CLCA1A8K7I4 914 aa11.5□□□□□ -0.57
SHMT2-227ENST00000557269 A8MVM7 634 aa11.5□□□□□ -0.57
SHMT2-227ENST00000557269 CXCL13O43927 109 aa11.5□□□□□ -0.57
SHMT2-227ENST00000557269 PIP5K1CO60331 668 aa11.5□□□□□ -0.57
SHMT2-227ENST00000557269 FKBP6O75344 327 aa11.5□□□□□ -0.57
SHMT2-227ENST00000557269 H1F0P07305 194 aaKnown RBP11.5□□□□□ -0.57
SHMT2-227ENST00000557269 THRBP10828 461 aa11.5□□□□□ -0.57
SHMT2-227ENST00000557269 EIF1AXP47813 144 aaKnown RBP11.5□□□□□ -0.57
SHMT2-227ENST00000557269 DIO1P49895 249 aa11.5□□□□□ -0.57
SHMT2-227ENST00000557269 UGT2B15P54855 530 aa11.5□□□□□ -0.57
SHMT2-227ENST00000557269 RBPJQ06330 500 aa11.5□□□□□ -0.57
SHMT2-227ENST00000557269 ST3GAL3Q11203 375 aa11.5□□□□□ -0.57
SHMT2-227ENST00000557269 SEC23BQ15437 767 aa11.5□□□□□ -0.57
SHMT2-227ENST00000557269 C1orf140Q5VVS0 124 aa11.5□□□□□ -0.57
SHMT2-227ENST00000557269 HBMQ6B0K9 141 aa11.5□□□□□ -0.57
SHMT2-227ENST00000557269 TBPL2Q6SJ96 375 aa11.5□□□□□ -0.57
SHMT2-227ENST00000557269 RPTNQ6XPR3 784 aa11.5□□□□□ -0.57
SHMT2-227ENST00000557269 ESPNLQ6ZVH7 1005 aa11.5□□□□□ -0.57
SHMT2-227ENST00000557269 SEM1Q6ZVN7 128 aa11.5□□□□□ -0.57
SHMT2-227ENST00000557269 ADGRE4PQ86SQ3 457 aa11.5□□□□□ -0.57
SHMT2-227ENST00000557269 CYP4Z1Q86W10 505 aa11.5□□□□□ -0.57
SHMT2-227ENST00000557269 MEIOBQ8N635 442 aa11.5□□□□□ -0.57
SHMT2-227ENST00000557269 OR52J3Q8NH60 311 aa11.5□□□□□ -0.57
SHMT2-227ENST00000557269 PFN4Q8NHR9 129 aa11.5□□□□□ -0.57
SHMT2-227ENST00000557269 SLC25A43Q8WUT9 341 aaPredicted RBP11.5□□□□□ -0.57
SHMT2-227ENST00000557269 OSTF1Q92882 214 aa11.5□□□□□ -0.57
SHMT2-227ENST00000557269 TAAR8Q969N4 342 aa11.5□□□□□ -0.57
SHMT2-227ENST00000557269 DDIT4LQ96D03 193 aa11.5□□□□□ -0.57
SHMT2-227ENST00000557269 DUS3LQ96G46 650 aaKnown RBP11.5□□□□□ -0.57
SHMT2-227ENST00000557269 RSRC1Q96IZ7 334 aaKnown RBP11.5□□□□□ -0.57
SHMT2-227ENST00000557269 DHRS1Q96LJ7 313 aa11.5□□□□□ -0.57
SHMT2-227ENST00000557269 FUZQ9BT04 418 aa11.5□□□□□ -0.57
SHMT2-227ENST00000557269 MEPEQ9NQ76 525 aaPredicted RBP11.5□□□□□ -0.57
SHMT2-227ENST00000557269 SELENONQ9NZV5 590 aa11.5□□□□□ -0.57
SHMT2-227ENST00000557269 KIAA1549Q9HCM3 1950 aa11.5□□□□□ -0.57
SHMT2-227ENST00000557269 A0A087WUU8 490 aa11.49□□□□□ -0.57
SHMT2-227ENST00000557269 TRGV8A0A0C4DH27 118 aa11.49□□□□□ -0.57
SHMT2-227ENST00000557269 GJE1A6NN92 205 aa11.49□□□□□ -0.57
SHMT2-227ENST00000557269 AHRRA9YTQ3 701 aa11.49□□□□□ -0.57
SHMT2-227ENST00000557269 ZNF814B7Z6K7 855 aa11.49□□□□□ -0.57
SHMT2-227ENST00000557269 LRRN3E7EW58 273 aa11.49□□□□□ -0.57
SHMT2-227ENST00000557269 KPNA4O00629 521 aaPredicted RBP11.49□□□□□ -0.57
SHMT2-227ENST00000557269 PRRG2O14669 202 aa11.49□□□□□ -0.57
SHMT2-227ENST00000557269 ENTPD5O75356 428 aa11.49□□□□□ -0.57
SHMT2-227ENST00000557269 TIPRLO75663 272 aa11.49□□□□□ -0.57
SHMT2-227ENST00000557269 TGM6O95932 706 aa11.49□□□□□ -0.57
SHMT2-227ENST00000557269 STSP08842 583 aa11.49□□□□□ -0.57
SHMT2-227ENST00000557269 ITGA2P17301 1181 aa11.49□□□□□ -0.57
SHMT2-227ENST00000557269 SLC7A1P30825 629 aa11.49□□□□□ -0.57
SHMT2-227ENST00000557269 RRM2P31350 389 aa11.49□□□□□ -0.57
SHMT2-227ENST00000557269 RPS5P46782 204 aaKnown RBP11.49□□□□□ -0.57
SHMT2-227ENST00000557269 MAP2K6P52564 334 aa11.49□□□□□ -0.57
SHMT2-227ENST00000557269 CARD18P57730 90 aa11.49□□□□□ -0.57
SHMT2-227ENST00000557269 SPIBQ01892 262 aa11.49□□□□□ -0.57
SHMT2-227ENST00000557269 LTBQ06643 244 aa11.49□□□□□ -0.57
SHMT2-227ENST00000557269 PPP1R8Q12972 351 aaKnown RBP11.49□□□□□ -0.57
SHMT2-227ENST00000557269 TRAM2Q15035 370 aa11.49□□□□□ -0.57
SHMT2-227ENST00000557269 ACSF3Q4G176 576 aaPredicted RBP11.49□□□□□ -0.57
SHMT2-227ENST00000557269 PODNL1Q6PEZ8 512 aa11.49□□□□□ -0.57
SHMT2-227ENST00000557269 TTC33Q6PID6 262 aaPredicted RBP11.49□□□□□ -0.57
SHMT2-227ENST00000557269 TMPPEQ6ZT21 453 aa11.49□□□□□ -0.57
SHMT2-227ENST00000557269 MEX3DQ86XN8 651 aaKnown RBP11.49□□□□□ -0.57
SHMT2-227ENST00000557269 PM20D2Q8IYS1 436 aa11.49□□□□□ -0.57
SHMT2-227ENST00000557269 MARVELD2Q8N4S9 558 aa11.49□□□□□ -0.57
SHMT2-227ENST00000557269 PRR7Q8TB68 274 aa11.49□□□□□ -0.57
SHMT2-227ENST00000557269 ZPLD1Q8TCW7 415 aa11.49□□□□□ -0.57
SHMT2-227ENST00000557269 STK35Q8TDR2 534 aa11.49□□□□□ -0.57
SHMT2-227ENST00000557269 PYDC1Q8WXC3 89 aa11.49□□□□□ -0.57
SHMT2-227ENST00000557269 POP5Q969H6 163 aaKnown RBP11.49□□□□□ -0.57
SHMT2-227ENST00000557269 MPP4Q96JB8 637 aa11.49□□□□□ -0.57
SHMT2-227ENST00000557269 TRIB1Q96RU8 372 aa11.49□□□□□ -0.57
SHMT2-227ENST00000557269 ZNF347Q96SE7 839 aa11.49□□□□□ -0.57
SHMT2-227ENST00000557269 TMEM43Q9BTV4 400 aa11.49□□□□□ -0.57
SHMT2-227ENST00000557269 POTEKPQ9BYX7 375 aa11.49□□□□□ -0.57
SHMT2-227ENST00000557269 C20orf141Q9NUB4 165 aa11.49□□□□□ -0.57
SHMT2-227ENST00000557269 SPIN1Q9Y657 262 aaPredicted RBP11.49□□□□□ -0.57
SHMT2-227ENST00000557269 GTF3C1Q12789 2109 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms