RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	KATNBL1	Q9H079	304 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	CWH43	Q9H720	699 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	GLTPD2	A6NH11	291 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	SOX1	O00570	391 aa	Predicted RBP	4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	RGS13	O14921	159 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	NXPH3	O95157	252 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	ADH1B	P00325	375 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	KNG1	P01042	644 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	WNT1	P04628	370 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	ACSM4	P0C7M7	580 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	RD3L	P0DJH9	198 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	S100A11	P31949	105 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	SLC6A12	P48065	614 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	GIPR	P48546	466 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	IRF4	Q15306	451 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	C12orf73	Q69YU5	71 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	C1orf94	Q6P1W5	598 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	CNKSR3	Q6P9H4	555 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	ZNF679	Q8IYX0	411 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	CMTM4	Q8IZR5	234 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	ZNF740	Q8NDX6	193 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	ZNF680	Q8NEM1	530 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	METTL21A	Q8WXB1	218 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	PEX11G	Q96HA9	241 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	HHIPL1	Q96JK4	782 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	CMKLR1	Q99788	373 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	ARHGAP9	Q9BRR9	750 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	UQCC2	Q9BRT2	126 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	HCAR1	Q9BXC0	346 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	MIXL1	Q9H2W2	232 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	STEAP1	Q9UHE8	339 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	GPN3	Q9UHW5	284 aa	Predicted RBP	4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	COL4A5	P29400	1685 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	SCN9A	Q15858	1988 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	PTPRF	P10586	1907 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	CIB4	A0PJX0	185 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	DCDC2B	A2VCK2	349 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	KRBOX1	C9JBD0	128 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	PTBP1	P26599	531 aa	Known RBP eCLIP	4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	S100G	P29377	79 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	OPRD1	P41143	372 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	RFX2	P48378	723 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	EIF5A	P63241	154 aa	Known RBP	4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	EBP	Q15125	230 aa	Known RBP	4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	RBMS2	Q15434	407 aa	Known RBP	4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	RPE65	Q16518	533 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	MPP7	Q5T2T1	576 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	LRFN4	Q6PJG9	635 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	LINC00299	Q6ZSB3	139 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	SVBP	Q8N300	66 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	PNLDC1	Q8NA58	520 aa	Known RBP	4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	FOXRED1	Q96CU9	486 aa	Predicted RBP	4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	FAM83C	Q9BQN1	747 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	PRTFDC1	Q9NRG1	225 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	EPHA6	Q9UF33	1036 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	CAMK2A	Q9UQM7	478 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	ZNF736	B4DX44	427 aa	Predicted RBP	4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	WRB	O00258	174 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	CHP2	O43745	196 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	UBL3	O95164	117 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	LALBA	P00709	142 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	KLKB1	P03952	638 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	RHO	P08100	348 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	CPM	P14384	443 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	S1PR1	P21453	382 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	NME2	P22392	152 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	PRPH2	P23942	346 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	PRSS3	P35030	304 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	CBX5	P45973	191 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	EVX1	P49640	407 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	RAB5C	P51148	216 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	YOD1	Q5VVQ6	348 aa	Predicted RBP	4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	RPL22L1	Q6P5R6	122 aa	Known RBP	4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	TMEM65	Q6PI78	240 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	C9orf62	Q8N4C0	152 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	OR11H7	Q8NGC8	314 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	OR5H2	Q8NGV7	314 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	NPRL2	Q8WTW4	380 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	ACOT11	Q8WXI4	607 aa	Predicted RBP	4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	C3orf49	Q96BT1	292 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	NMNAT3	Q96T66	252 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	ELF4	Q99607	663 aa	Predicted RBP	4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	PTDSS2	Q9BVG9	487 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	ZNF223	Q9UK11	482 aa	Predicted RBP	4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	RBM7	Q9Y580	266 aa	Known RBP	4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	TRIP11	Q15643	1979 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	SI	P14410	1827 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	CARNS1	A5YM72	827 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	PLPP1	O14494	284 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	ZNF623	O75123	536 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	ZNF254	O75437	659 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	CRTAP	O75718	401 aa	Predicted RBP	4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	CAPZA1	P52907	286 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	B4GALNT1	Q00973	533 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	TEK	Q02763	1124 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	AGER	Q15109	404 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	DHCR24	Q15392	516 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	C2orf27A	Q580R0	203 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	YIF1B	Q5BJH7	314 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	MFSD9	Q8NBP5	474 aa		4.63	□□□□□ -1.67

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