RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 NPIPB7O75200 414 aa11□□□□□ -0.65
SHMT2-209ENST00000553949 FKBP6O75344 327 aa11□□□□□ -0.65
SHMT2-209ENST00000553949 H1F0P07305 194 aaKnown RBP11□□□□□ -0.65
SHMT2-209ENST00000553949 RBM34P42696 430 aaKnown RBP11□□□□□ -0.65
SHMT2-209ENST00000553949 EIF1AXP47813 144 aaKnown RBP11□□□□□ -0.65
SHMT2-209ENST00000553949 RPS3AP61247 264 aaKnown RBP11□□□□□ -0.65
SHMT2-209ENST00000553949 EGR4Q05215 589 aa11□□□□□ -0.65
SHMT2-209ENST00000553949 MYBPHQ13203 477 aa11□□□□□ -0.65
SHMT2-209ENST00000553949 MRPL49Q13405 166 aaKnown RBP11□□□□□ -0.65
SHMT2-209ENST00000553949 TRAM2Q15035 370 aa11□□□□□ -0.65
SHMT2-209ENST00000553949 C1QL3Q5VWW1 255 aa11□□□□□ -0.65
SHMT2-209ENST00000553949 ZNF585AQ6P3V2 769 aa11□□□□□ -0.65
SHMT2-209ENST00000553949 TTC33Q6PID6 262 aaPredicted RBP11□□□□□ -0.65
SHMT2-209ENST00000553949 ATCAYQ86WG3 371 aa11□□□□□ -0.65
SHMT2-209ENST00000553949 P3H2Q8IVL5 708 aa11□□□□□ -0.65
SHMT2-209ENST00000553949 NKAIN4Q8IVV8 208 aa11□□□□□ -0.65
SHMT2-209ENST00000553949 PAPD5Q8NDF8 572 aaKnown RBP11□□□□□ -0.65
SHMT2-209ENST00000553949 ZPLD1Q8TCW7 415 aa11□□□□□ -0.65
SHMT2-209ENST00000553949 STK35Q8TDR2 534 aa11□□□□□ -0.65
SHMT2-209ENST00000553949 TMEM255BQ8WV15 326 aa11□□□□□ -0.65
SHMT2-209ENST00000553949 DUS3LQ96G46 650 aaKnown RBP11□□□□□ -0.65
SHMT2-209ENST00000553949 ARL5BQ96KC2 179 aa11□□□□□ -0.65
SHMT2-209ENST00000553949 DHRS1Q96LJ7 313 aa11□□□□□ -0.65
SHMT2-209ENST00000553949 OR5B2Q96R09 309 aa11□□□□□ -0.65
SHMT2-209ENST00000553949 TUBA1CQ9BQE3 449 aa11□□□□□ -0.65
SHMT2-209ENST00000553949 TMEM43Q9BTV4 400 aa11□□□□□ -0.65
SHMT2-209ENST00000553949 ZNF426Q9BUY5 554 aa11□□□□□ -0.65
SHMT2-209ENST00000553949 POTEKPQ9BYX7 375 aa11□□□□□ -0.65
SHMT2-209ENST00000553949 ANKRD19PQ9H560 264 aa11□□□□□ -0.65
SHMT2-209ENST00000553949 YY1AP1Q9H869 796 aa11□□□□□ -0.65
SHMT2-209ENST00000553949 COQ10BQ9H8M1 238 aa11□□□□□ -0.65
SHMT2-209ENST00000553949 ALKBH4Q9NXW9 302 aa11□□□□□ -0.65
SHMT2-209ENST00000553949 HDGFL3Q9Y3E1 203 aa11□□□□□ -0.65
SHMT2-209ENST00000553949 TESMINQ9Y4I5 508 aa11□□□□□ -0.65
SHMT2-209ENST00000553949 A0A1W2PRQ8 180 aa10.99□□□□□ -0.65
SHMT2-209ENST00000553949 FIGNL2A6NMB9 653 aa10.99□□□□□ -0.65
SHMT2-209ENST00000553949 AHRRA9YTQ3 701 aa10.99□□□□□ -0.65
SHMT2-209ENST00000553949 WDR1O75083 606 aa10.99□□□□□ -0.65
SHMT2-209ENST00000553949 AHSA1O95433 338 aa10.99□□□□□ -0.65
SHMT2-209ENST00000553949 GABRA1P14867 456 aa10.99□□□□□ -0.65
SHMT2-209ENST00000553949 PTNP21246 168 aa10.99□□□□□ -0.65
SHMT2-209ENST00000553949 GNLYP22749 145 aa10.99□□□□□ -0.65
SHMT2-209ENST00000553949 RRM2P31350 389 aa10.99□□□□□ -0.65
SHMT2-209ENST00000553949 PTGER4P35408 488 aa10.99□□□□□ -0.65
SHMT2-209ENST00000553949 CARD18P57730 90 aa10.99□□□□□ -0.65
SHMT2-209ENST00000553949 SMIM11AP58511 58 aa10.99□□□□□ -0.65
SHMT2-209ENST00000553949 SPIBQ01892 262 aa10.99□□□□□ -0.65
SHMT2-209ENST00000553949 DGCR6Q14129 220 aa10.99□□□□□ -0.65
SHMT2-209ENST00000553949 PDSS1Q5T2R2 415 aa10.99□□□□□ -0.65
SHMT2-209ENST00000553949 C1orf140Q5VVS0 124 aa10.99□□□□□ -0.65
SHMT2-209ENST00000553949 HBMQ6B0K9 141 aa10.99□□□□□ -0.65
SHMT2-209ENST00000553949 C5orf46Q6UWT4 87 aa10.99□□□□□ -0.65
SHMT2-209ENST00000553949 TMPPEQ6ZT21 453 aa10.99□□□□□ -0.65
SHMT2-209ENST00000553949 ZNF771Q7L3S4 317 aaPredicted RBP10.99□□□□□ -0.65
SHMT2-209ENST00000553949 CHMP1BQ7LBR1 199 aa10.99□□□□□ -0.65
SHMT2-209ENST00000553949 DOLPP1Q86YN1 238 aa10.99□□□□□ -0.65
SHMT2-209ENST00000553949 OR52J3Q8NH60 311 aa10.99□□□□□ -0.65
SHMT2-209ENST00000553949 OR10D3Q8NH80 312 aa10.99□□□□□ -0.65
SHMT2-209ENST00000553949 TMEM239Q8WW34 195 aa10.99□□□□□ -0.65
SHMT2-209ENST00000553949 OSTF1Q92882 214 aa10.99□□□□□ -0.65
SHMT2-209ENST00000553949 KTI12Q96EK9 354 aaPredicted RBP10.99□□□□□ -0.65
SHMT2-209ENST00000553949 DNAJA3Q96EY1 480 aa10.99□□□□□ -0.65
SHMT2-209ENST00000553949 ZNF845Q96IR2 970 aaPredicted RBP10.99□□□□□ -0.65
SHMT2-209ENST00000553949 HS6ST2Q96MM7 605 aa10.99□□□□□ -0.65
SHMT2-209ENST00000553949 EPYCQ99645 322 aa10.99□□□□□ -0.65
SHMT2-209ENST00000553949 SLC19A3Q9BZV2 496 aa10.99□□□□□ -0.65
SHMT2-209ENST00000553949 TP63Q9H3D4 680 aaPredicted RBP10.99□□□□□ -0.65
SHMT2-209ENST00000553949 TINAGQ9UJW2 476 aa10.99□□□□□ -0.65
SHMT2-209ENST00000553949 OSGIN2Q9Y236 505 aa10.99□□□□□ -0.65
SHMT2-209ENST00000553949 AP4S1Q9Y587 144 aa10.99□□□□□ -0.65
SHMT2-209ENST00000553949 ZNF407Q9C0G0 2248 aa10.99□□□□□ -0.65
SHMT2-209ENST00000553949 TRAV36DV7A0A075B6V5 113 aa10.98□□□□□ -0.65
SHMT2-209ENST00000553949 CLCA1A8K7I4 914 aa10.98□□□□□ -0.65
SHMT2-209ENST00000553949 SULT2B1O00204 365 aa10.98□□□□□ -0.65
SHMT2-209ENST00000553949 KPNA4O00629 521 aaPredicted RBP10.98□□□□□ -0.65
SHMT2-209ENST00000553949 CXCL13O43927 109 aa10.98□□□□□ -0.65
SHMT2-209ENST00000553949 ENTPD5O75356 428 aa10.98□□□□□ -0.65
SHMT2-209ENST00000553949 KRT36O76013 467 aa10.98□□□□□ -0.65
SHMT2-209ENST00000553949 GADD45GO95257 159 aa10.98□□□□□ -0.65
SHMT2-209ENST00000553949 PMS2P2O95744 297 aa10.98□□□□□ -0.65
SHMT2-209ENST00000553949 IMPDH2P12268 514 aa10.98□□□□□ -0.65
SHMT2-209ENST00000553949 ACVR2AP27037 513 aa10.98□□□□□ -0.65
SHMT2-209ENST00000553949 IDUAP35475 653 aa10.98□□□□□ -0.65
SHMT2-209ENST00000553949 RPS5P46782 204 aaKnown RBP10.98□□□□□ -0.65
SHMT2-209ENST00000553949 UQCRFS1P47985 274 aa10.98□□□□□ -0.65
SHMT2-209ENST00000553949 DIO1P49895 249 aa10.98□□□□□ -0.65
SHMT2-209ENST00000553949 UGT2B15P54855 530 aa10.98□□□□□ -0.65
SHMT2-209ENST00000553949 CASP6P55212 293 aa10.98□□□□□ -0.65
SHMT2-209ENST00000553949 CSNK2A1P68400 391 aaPredicted RBP10.98□□□□□ -0.65
SHMT2-209ENST00000553949 SF3B4Q15427 424 aaKnown RBP eCLIP10.98□□□□□ -0.658e-12■■■■■ 35.4
SHMT2-209ENST00000553949 SGCBQ16585 318 aa10.98□□□□□ -0.65
SHMT2-209ENST00000553949 ACSF3Q4G176 576 aaPredicted RBP10.98□□□□□ -0.65
SHMT2-209ENST00000553949 FGD3Q5JSP0 725 aa10.98□□□□□ -0.65
SHMT2-209ENST00000553949 OR2T5Q6IEZ7 315 aa10.98□□□□□ -0.65
SHMT2-209ENST00000553949 PODNL1Q6PEZ8 512 aa10.98□□□□□ -0.65
SHMT2-209ENST00000553949 C10orf67Q8IYJ2 551 aa10.98□□□□□ -0.65
SHMT2-209ENST00000553949 OR2T29Q8NH02 315 aa10.98□□□□□ -0.65
SHMT2-209ENST00000553949 SLC7A13Q8TCU3 470 aa10.98□□□□□ -0.65
SHMT2-209ENST00000553949 PYDC1Q8WXC3 89 aa10.98□□□□□ -0.65
SHMT2-209ENST00000553949 ACOT11Q8WXI4 607 aaPredicted RBP10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms