RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 NCALDP61601 193 aa12.62□□□□□ -0.39
PTCH1-226ENST00000553011 NPTX1Q15818 432 aa12.62□□□□□ -0.39
PTCH1-226ENST00000553011 VWA1Q6PCB0 445 aa12.62□□□□□ -0.39
PTCH1-226ENST00000553011 ATG4DQ86TL0 474 aaPredicted RBP12.62□□□□□ -0.39
PTCH1-226ENST00000553011 RBM45Q8IUH3 476 aaKnown RBP12.62□□□□□ -0.39
PTCH1-226ENST00000553011 RNF148Q8N7C7 305 aa12.62□□□□□ -0.39
PTCH1-226ENST00000553011 OR6T1Q8NGN1 323 aa12.62□□□□□ -0.39
PTCH1-226ENST00000553011 VANGL1Q8TAA9 524 aaPredicted RBP12.62□□□□□ -0.39
PTCH1-226ENST00000553011 KCTD14Q9BQ13 255 aaPredicted RBP12.62□□□□□ -0.39
PTCH1-226ENST00000553011 ZNF559Q9BR84 538 aa12.62□□□□□ -0.39
PTCH1-226ENST00000553011 SFXN3Q9BWM7 321 aa12.62□□□□□ -0.39
PTCH1-226ENST00000553011 TRIM2Q9C040 744 aa12.62□□□□□ -0.39
PTCH1-226ENST00000553011 SPAG4Q9NPE6 437 aa12.62□□□□□ -0.39
PTCH1-226ENST00000553011 NPDC1Q9NQX5 325 aaPredicted RBP12.62□□□□□ -0.39
PTCH1-226ENST00000553011 RPS6KB2Q9UBS0 482 aa12.62□□□□□ -0.39
PTCH1-226ENST00000553011 TESQ9UGI8 421 aaKnown RBP12.62□□□□□ -0.39
PTCH1-226ENST00000553011 PRDM4Q9UKN5 801 aa12.62□□□□□ -0.39
PTCH1-226ENST00000553011 ALPK2Q86TB3 2170 aa12.62□□□□□ -0.39
PTCH1-226ENST00000553011 EEF1E1-BLOC1S5C9J1V9 151 aa12.61□□□□□ -0.39
PTCH1-226ENST00000553011 CXCR6O00574 342 aa12.61□□□□□ -0.39
PTCH1-226ENST00000553011 SMAD9O15198 467 aaKnown RBP12.61□□□□□ -0.39
PTCH1-226ENST00000553011 GSTA4O15217 222 aa12.61□□□□□ -0.39
PTCH1-226ENST00000553011 EEF1E1O43324 174 aaKnown RBP12.61□□□□□ -0.39
PTCH1-226ENST00000553011 CRHP06850 196 aa12.61□□□□□ -0.39
PTCH1-226ENST00000553011 IMPDH2P12268 514 aa12.61□□□□□ -0.39
PTCH1-226ENST00000553011 TNFRSF1BP20333 461 aa12.61□□□□□ -0.39
PTCH1-226ENST00000553011 FKBP2P26885 142 aaKnown RBP12.61□□□□□ -0.39
PTCH1-226ENST00000553011 CLK1P49759 484 aaKnown RBP12.61□□□□□ -0.39
PTCH1-226ENST00000553011 MXRA7P84157 204 aa12.61□□□□□ -0.39
PTCH1-226ENST00000553011 GUSBP1Q15486 140 aa12.61□□□□□ -0.39
PTCH1-226ENST00000553011 OR1Q1Q15612 314 aa12.61□□□□□ -0.39
PTCH1-226ENST00000553011 CYBRD1Q53TN4 286 aa12.61□□□□□ -0.39
PTCH1-226ENST00000553011 SP5Q6BEB4 398 aaPredicted RBP12.61□□□□□ -0.39
PTCH1-226ENST00000553011 FCRLAQ7L513 359 aa12.61□□□□□ -0.39
PTCH1-226ENST00000553011 RANBP3LQ86VV4 465 aaPredicted RBP12.61□□□□□ -0.39
PTCH1-226ENST00000553011 PGAM4Q8N0Y7 254 aa12.61□□□□□ -0.39
PTCH1-226ENST00000553011 LSMEM1Q8N8F7 131 aa12.61□□□□□ -0.39
PTCH1-226ENST00000553011 RNF128Q8TEB7 428 aa12.61□□□□□ -0.39
PTCH1-226ENST00000553011 ABHD3Q8WU67 409 aa12.61□□□□□ -0.39
PTCH1-226ENST00000553011 RASSF5Q8WWW0 418 aa12.61□□□□□ -0.39
PTCH1-226ENST00000553011 DDIT4LQ96D03 193 aa12.61□□□□□ -0.39
PTCH1-226ENST00000553011 STARD4Q96DR4 205 aa12.61□□□□□ -0.39
PTCH1-226ENST00000553011 NSL1Q96IY1 281 aa12.61□□□□□ -0.39
PTCH1-226ENST00000553011 MCHR1Q99705 422 aa12.61□□□□□ -0.39
PTCH1-226ENST00000553011 EVA1AQ9H8M9 152 aa12.61□□□□□ -0.39
PTCH1-226ENST00000553011 HDGFL3Q9Y3E1 203 aa12.61□□□□□ -0.39
PTCH1-226ENST00000553011 ITPR2Q14571 2701 aa12.61□□□□□ -0.39
PTCH1-226ENST00000553011 NOTCH2Q04721 2471 aa12.61□□□□□ -0.39
PTCH1-226ENST00000553011 ABCA4P78363 2273 aa12.6□□□□□ -0.39
PTCH1-226ENST00000553011 CELSR2Q9HCU4 2923 aa12.6□□□□□ -0.39
PTCH1-226ENST00000553011 A0A0B4J2E0 115 aa12.6□□□□□ -0.39
PTCH1-226ENST00000553011 A0A1B0GX12 115 aa12.6□□□□□ -0.39
PTCH1-226ENST00000553011 ELOA3DA6NLF2 546 aaPredicted RBP12.6□□□□□ -0.39
PTCH1-226ENST00000553011 PMS2P2O95744 297 aa12.6□□□□□ -0.39
PTCH1-226ENST00000553011 PLGP00747 810 aaPredicted RBP12.6□□□□□ -0.39
PTCH1-226ENST00000553011 IFNA14P01570 189 aa12.6□□□□□ -0.39
PTCH1-226ENST00000553011 T-ENOLP0DO92 83 aa12.6□□□□□ -0.39
PTCH1-226ENST00000553011 NCK1P16333 377 aa12.6□□□□□ -0.39
PTCH1-226ENST00000553011 ASCL1P50553 236 aa12.6□□□□□ -0.39
PTCH1-226ENST00000553011 MAP2K6P52564 334 aa12.6□□□□□ -0.39
PTCH1-226ENST00000553011 OR2B6P58173 313 aa12.6□□□□□ -0.39
PTCH1-226ENST00000553011 CSNK2A1P68400 391 aaPredicted RBP12.6□□□□□ -0.39
PTCH1-226ENST00000553011 ELOA3BQ3SY89 546 aa12.6□□□□□ -0.39
PTCH1-226ENST00000553011 C6orf89Q6UWU4 347 aa12.6□□□□□ -0.39
PTCH1-226ENST00000553011 BTLAQ7Z6A9 289 aa12.6□□□□□ -0.39
PTCH1-226ENST00000553011 TSPYL5Q86VY4 417 aaPredicted RBP12.6□□□□□ -0.39
PTCH1-226ENST00000553011 CARM1Q86X55 608 aa12.6□□□□□ -0.39
PTCH1-226ENST00000553011 MCEMP1Q8IX19 187 aa12.6□□□□□ -0.39
PTCH1-226ENST00000553011 DEFB107AQ8IZN7 70 aa12.6□□□□□ -0.39
PTCH1-226ENST00000553011 FAM156AQ8NDB6 213 aa12.6□□□□□ -0.39
PTCH1-226ENST00000553011 ELOA3Q8NG57 546 aa12.6□□□□□ -0.39
PTCH1-226ENST00000553011 RNF217Q8TC41 542 aa12.6□□□□□ -0.39
PTCH1-226ENST00000553011 PROX1Q92786 737 aa12.6□□□□□ -0.39
PTCH1-226ENST00000553011 GMPPAQ96IJ6 420 aaPredicted RBP12.6□□□□□ -0.39
PTCH1-226ENST00000553011 POTEKPQ9BYX7 375 aa12.6□□□□□ -0.39
PTCH1-226ENST00000553011 TMEM27Q9HBJ8 222 aa12.6□□□□□ -0.39
PTCH1-226ENST00000553011 CHST11Q9NPF2 352 aa12.6□□□□□ -0.39
PTCH1-226ENST00000553011 JKAMPQ9P055 326 aa12.6□□□□□ -0.39
PTCH1-226ENST00000553011 EGFL7Q9UHF1 273 aa12.6□□□□□ -0.39
PTCH1-226ENST00000553011 BAG5Q9UL15 447 aa12.6□□□□□ -0.39
PTCH1-226ENST00000553011 SH3GLB1Q9Y371 365 aa12.6□□□□□ -0.39
PTCH1-226ENST00000553011 CPSF4LA6NMK7 179 aaKnown RBP12.59□□□□□ -0.39
PTCH1-226ENST00000553011 A8MVM7 634 aa12.59□□□□□ -0.39
PTCH1-226ENST00000553011 B2RBV5 119 aa12.59□□□□□ -0.39
PTCH1-226ENST00000553011 ZNF814B7Z6K7 855 aa12.59□□□□□ -0.39
PTCH1-226ENST00000553011 FMO6PO60774 539 aa12.59□□□□□ -0.39
PTCH1-226ENST00000553011 SS18L1O75177 396 aaPredicted RBP12.59□□□□□ -0.39
PTCH1-226ENST00000553011 NPIPB7O75200 414 aa12.59□□□□□ -0.39
PTCH1-226ENST00000553011 SMNDC1O75940 238 aaKnown RBP eCLIP12.59□□□□□ -0.39
PTCH1-226ENST00000553011 GGT1P19440 569 aa12.59□□□□□ -0.39
PTCH1-226ENST00000553011 PTNP21246 168 aa12.59□□□□□ -0.39
PTCH1-226ENST00000553011 IDUAP35475 653 aa12.59□□□□□ -0.39
PTCH1-226ENST00000553011 CPOXP36551 454 aa12.59□□□□□ -0.39
PTCH1-226ENST00000553011 CTBP2P56545 445 aa12.59□□□□□ -0.39
PTCH1-226ENST00000553011 EGR4Q05215 589 aa12.59□□□□□ -0.39
PTCH1-226ENST00000553011 ALG10BQ5I7T1 473 aa12.59□□□□□ -0.39
PTCH1-226ENST00000553011 ENTPD8Q5MY95 495 aa12.59□□□□□ -0.39
PTCH1-226ENST00000553011 C1orf140Q5VVS0 124 aa12.59□□□□□ -0.39
PTCH1-226ENST00000553011 ZNF787Q6DD87 383 aa12.59□□□□□ -0.39
PTCH1-226ENST00000553011 ULK3Q6PHR2 472 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms