RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 DDIT4LQ96D03 193 aa14.44□□□□□ -0.1
VPS29-207ENST00000549970 ITCHQ96J02 903 aa14.44□□□□□ -0.1
VPS29-207ENST00000549970 USB1Q9BQ65 265 aaKnown RBP14.44□□□□□ -0.1
VPS29-207ENST00000549970 GSX2Q9BZM3 304 aa14.44□□□□□ -0.1
VPS29-207ENST00000549970 CXorf56Q9H5V9 222 aa14.44□□□□□ -0.1
VPS29-207ENST00000549970 TMEM181Q9P2C4 612 aa14.44□□□□□ -0.1
VPS29-207ENST00000549970 LAMP3Q9UQV4 416 aa14.44□□□□□ -0.1
VPS29-207ENST00000549970 CADP27708 2225 aa14.43□□□□□ -0.1
VPS29-207ENST00000549970 ZC3H12DA2A288 527 aaKnown RBP14.43□□□□□ -0.1
VPS29-207ENST00000549970 TRIM64A6NGJ6 449 aa14.43□□□□□ -0.1
VPS29-207ENST00000549970 TRIM64BA6NI03 449 aa14.43□□□□□ -0.1
VPS29-207ENST00000549970 SMAD7O15105 426 aaKnown RBP14.43□□□□□ -0.1
VPS29-207ENST00000549970 DNPH1O43598 174 aa14.43□□□□□ -0.1
VPS29-207ENST00000549970 GKN3PP0CG01 181 aa14.43□□□□□ -0.1
VPS29-207ENST00000549970 ZCCHC18P0CG32 403 aa14.43□□□□□ -0.1
VPS29-207ENST00000549970 HOXB4P17483 251 aaPredicted RBP14.43□□□□□ -0.1
VPS29-207ENST00000549970 GGT1P19440 569 aa14.43□□□□□ -0.1
VPS29-207ENST00000549970 COX5AP20674 150 aa14.43□□□□□ -0.1
VPS29-207ENST00000549970 SLC1A3P43003 542 aa14.43□□□□□ -0.1
VPS29-207ENST00000549970 CRISP3P54108 245 aa14.43□□□□□ -0.1
VPS29-207ENST00000549970 BSPH1Q075Z2 132 aa14.43□□□□□ -0.1
VPS29-207ENST00000549970 LIN52Q52LA3 116 aa14.43□□□□□ -0.1
VPS29-207ENST00000549970 AGBL2Q5U5Z8 902 aa14.43□□□□□ -0.1
VPS29-207ENST00000549970 FBXW9Q5XUX1 488 aa14.43□□□□□ -0.1
VPS29-207ENST00000549970 SEZ6L2Q6UXD5 910 aa14.43□□□□□ -0.1
VPS29-207ENST00000549970 CLEC9AQ6UXN8 241 aa14.43□□□□□ -0.1
VPS29-207ENST00000549970 ZNF836Q6ZNA1 936 aa14.43□□□□□ -0.1
VPS29-207ENST00000549970 KBTBD8Q8NFY9 601 aa14.43□□□□□ -0.1
VPS29-207ENST00000549970 LILRB1Q8NHL6 650 aaPredicted RBP14.43□□□□□ -0.1
VPS29-207ENST00000549970 SLC38A5Q8WUX1 472 aa14.43□□□□□ -0.1
VPS29-207ENST00000549970 NEUROG1Q92886 237 aa14.43□□□□□ -0.1
VPS29-207ENST00000549970 COX4I2Q96KJ9 171 aa14.43□□□□□ -0.1
VPS29-207ENST00000549970 CALML5Q9NZT1 146 aa14.43□□□□□ -0.1
VPS29-207ENST00000549970 TRAPPC4Q9Y296 219 aa14.43□□□□□ -0.1
VPS29-207ENST00000549970 NAV3Q8IVL0 2385 aa14.42□□□□□ -0.1
VPS29-207ENST00000549970 DSPPQ9NZW4 1301 aa14.42□□□□□ -0.1
VPS29-207ENST00000549970 FAM234BA2RU67 622 aa14.42□□□□□ -0.1
VPS29-207ENST00000549970 CDHR4A6H8M9 788 aa14.42□□□□□ -0.1
VPS29-207ENST00000549970 DPRXA6NFQ7 191 aa14.42□□□□□ -0.1
VPS29-207ENST00000549970 FAAHO00519 579 aa14.42□□□□□ -0.1
VPS29-207ENST00000549970 GPR171O14626 319 aa14.42□□□□□ -0.1
VPS29-207ENST00000549970 ZNF208O43345 1280 aa14.42□□□□□ -0.1
VPS29-207ENST00000549970 RAD51DO75771 328 aa14.42□□□□□ -0.1
VPS29-207ENST00000549970 CNOT4O95628 575 aaKnown RBP14.42□□□□□ -0.1
VPS29-207ENST00000549970 TFPTP0C1Z6 253 aa14.42□□□□□ -0.1
VPS29-207ENST00000549970 IMPDH2P12268 514 aa14.42□□□□□ -0.1
VPS29-207ENST00000549970 NTF4P34130 210 aa14.42□□□□□ -0.1
VPS29-207ENST00000549970 MAGEA8P43361 318 aa14.42□□□□□ -0.1
VPS29-207ENST00000549970 SLC16A1P53985 500 aa14.42□□□□□ -0.1
VPS29-207ENST00000549970 SLC35A1P78382 337 aa14.42□□□□□ -0.1
VPS29-207ENST00000549970 LTBQ06643 244 aa14.42□□□□□ -0.1
VPS29-207ENST00000549970 TIMM23BQ5SRD1 257 aa14.42□□□□□ -0.1
VPS29-207ENST00000549970 ADAM5Q6NVV9 412 aa14.42□□□□□ -0.1
VPS29-207ENST00000549970 EPGNQ6UW88 154 aa14.42□□□□□ -0.1
VPS29-207ENST00000549970 ZNF440Q8IYI8 595 aa14.42□□□□□ -0.1
VPS29-207ENST00000549970 CADM2Q8N3J6 435 aa14.42□□□□□ -0.1
VPS29-207ENST00000549970 ZNF433Q8N7K0 673 aaPredicted RBP14.42□□□□□ -0.1
VPS29-207ENST00000549970 FBXW5Q969U6 566 aa14.42□□□□□ -0.1
VPS29-207ENST00000549970 MUCL1Q96DR8 90 aa14.42□□□□□ -0.1
VPS29-207ENST00000549970 TMEM19Q96HH6 336 aa14.42□□□□□ -0.1
VPS29-207ENST00000549970 BDH2Q9BUT1 245 aa14.42□□□□□ -0.1
VPS29-207ENST00000549970 ZNF443Q9Y2A4 671 aaPredicted RBP14.42□□□□□ -0.1
VPS29-207ENST00000549970 PCDHB14Q9Y5E9 798 aa14.42□□□□□ -0.1
VPS29-207ENST00000549970 CIB4A0PJX0 185 aa14.41□□□□□ -0.1
VPS29-207ENST00000549970 TMEM247A6NEH6 219 aa14.41□□□□□ -0.1
VPS29-207ENST00000549970 POLR3GO15318 223 aaPredicted RBP14.41□□□□□ -0.1
VPS29-207ENST00000549970 EIF1BO60739 113 aaKnown RBP14.41□□□□□ -0.1
VPS29-207ENST00000549970 MRPL33O75394 65 aaKnown RBP14.41□□□□□ -0.1
VPS29-207ENST00000549970 CXCR1P25024 350 aa14.41□□□□□ -0.1
VPS29-207ENST00000549970 ATP5J2P56134 94 aa14.41□□□□□ -0.1
VPS29-207ENST00000549970 STX1BP61266 288 aa14.41□□□□□ -0.1
VPS29-207ENST00000549970 RPS4XP62701 263 aaKnown RBP14.41□□□□□ -0.1
VPS29-207ENST00000549970 H3F3AP84243 136 aa14.41□□□□□ -0.1
VPS29-207ENST00000549970 LARS2Q15031 903 aaKnown RBP14.41□□□□□ -0.1
VPS29-207ENST00000549970 SLC2A7Q6PXP3 512 aa14.41□□□□□ -0.1
VPS29-207ENST00000549970 CASP12Q6UXS9 341 aa14.41□□□□□ -0.1
VPS29-207ENST00000549970 LRRC8CQ8TDW0 803 aa14.41□□□□□ -0.1
VPS29-207ENST00000549970 GTF2H4Q92759 462 aa14.41□□□□□ -0.1
VPS29-207ENST00000549970 C7orf26Q96N11 449 aa14.41□□□□□ -0.1
VPS29-207ENST00000549970 NAA11Q9BSU3 229 aaPredicted RBP14.41□□□□□ -0.1
VPS29-207ENST00000549970 ADAM19Q9H013 955 aa14.41□□□□□ -0.1
VPS29-207ENST00000549970 CACYBPQ9HB71 228 aaKnown RBP14.41□□□□□ -0.1
VPS29-207ENST00000549970 SLCO1B3Q9NPD5 702 aa14.41□□□□□ -0.1
VPS29-207ENST00000549970 TCF7L2Q9NQB0 619 aa14.41□□□□□ -0.1
VPS29-207ENST00000549970 ZNF701Q9NV72 531 aaPredicted RBP14.41□□□□□ -0.1
VPS29-207ENST00000549970 ASB6Q9NWX5 421 aa14.41□□□□□ -0.1
VPS29-207ENST00000549970 CCT8L1PA6NM43 557 aa14.4□□□□□ -0.1
VPS29-207ENST00000549970 TMCC2O75069 709 aa14.4□□□□□ -0.1
VPS29-207ENST00000549970 PGM3O95394 542 aa14.4□□□□□ -0.1
VPS29-207ENST00000549970 SOD3P08294 240 aa14.4□□□□□ -0.1
VPS29-207ENST00000549970 NUDT7P0C024 238 aa14.4□□□□□ -0.1
VPS29-207ENST00000549970 PAX1P15863 534 aa14.4□□□□□ -0.1
VPS29-207ENST00000549970 ACAA2P42765 397 aaKnown RBP14.4□□□□□ -0.1
VPS29-207ENST00000549970 MAP2K6P52564 334 aa14.4□□□□□ -0.1
VPS29-207ENST00000549970 COPZ1P61923 177 aa14.4□□□□□ -0.1
VPS29-207ENST00000549970 FAPQ12884 760 aa14.4□□□□□ -0.1
VPS29-207ENST00000549970 KRTAP21-3Q3LHN1 58 aa14.4□□□□□ -0.1
VPS29-207ENST00000549970 ZNF672Q499Z4 452 aaPredicted RBP14.4□□□□□ -0.1
VPS29-207ENST00000549970 CLIP4Q8N3C7 705 aa14.4□□□□□ -0.1
VPS29-207ENST00000549970 OR52E4Q8NGH9 312 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms