RNA–Protein interactions for RNA: ENST00000544669.5

CPSF7-223, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 1,800 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-223	ENST00000544669	UNQ9370/PRO34162	Q6UXP9	181 aa		12	□□□□□ -0.49
CPSF7-223	ENST00000544669	SLC35F3	Q8IY50	421 aa		12	□□□□□ -0.49
CPSF7-223	ENST00000544669	NLGN4Y	Q8NFZ3	816 aa	Predicted RBP	12	□□□□□ -0.49
CPSF7-223	ENST00000544669	OR7G1	Q8NGA0	311 aa		12	□□□□□ -0.49
CPSF7-223	ENST00000544669	LIPH	Q8WWY8	451 aa		12	□□□□□ -0.49
CPSF7-223	ENST00000544669	TCTN2	Q96GX1	697 aa		12	□□□□□ -0.49
CPSF7-223	ENST00000544669	MSANTD3	Q96H12	275 aa		12	□□□□□ -0.49
CPSF7-223	ENST00000544669	RADIL	Q96JH8	1075 aa		12	□□□□□ -0.49
CPSF7-223	ENST00000544669	VSTM2L	Q96N03	204 aa		12	□□□□□ -0.49
CPSF7-223	ENST00000544669	HCAR1	Q9BXC0	346 aa		12	□□□□□ -0.49
CPSF7-223	ENST00000544669	UCKL1	Q9NWZ5	548 aa		12	□□□□□ -0.49
CPSF7-223	ENST00000544669	FLRT3	Q9NZU0	649 aa		12	□□□□□ -0.49
CPSF7-223	ENST00000544669	MSRA	Q9UJ68	235 aa		12	□□□□□ -0.49
CPSF7-223	ENST00000544669	POMT2	Q9UKY4	750 aa		12	□□□□□ -0.49
CPSF7-223	ENST00000544669	ZMIZ1	Q9ULJ6	1067 aa		12	□□□□□ -0.49
CPSF7-223	ENST00000544669	TRBV2	A0A0J9YWF9	115 aa		11.99	□□□□□ -0.49
CPSF7-223	ENST00000544669	ANKRD34B	A5PLL1	514 aa		11.99	□□□□□ -0.49
CPSF7-223	ENST00000544669	SERINC4	A6NH21	518 aa		11.99	□□□□□ -0.49
CPSF7-223	ENST00000544669	NPIPB9	F8W1W9	429 aa		11.99	□□□□□ -0.49
CPSF7-223	ENST00000544669	HYAL3	O43820	417 aa	Predicted RBP	11.99	□□□□□ -0.49
CPSF7-223	ENST00000544669	SEMA4F	O95754	770 aa		11.99	□□□□□ -0.49
CPSF7-223	ENST00000544669	CSTA	P01040	98 aa		11.99	□□□□□ -0.49
CPSF7-223	ENST00000544669	EIF4E	P06730	217 aa	Known RBP	11.99	□□□□□ -0.49
CPSF7-223	ENST00000544669	GLUL	P15104	373 aa		11.99	□□□□□ -0.49
CPSF7-223	ENST00000544669	FUT1	P19526	365 aa		11.99	□□□□□ -0.49
CPSF7-223	ENST00000544669	S1PR1	P21453	382 aa		11.99	□□□□□ -0.49
CPSF7-223	ENST00000544669	EMD	P50402	254 aa		11.99	□□□□□ -0.49
CPSF7-223	ENST00000544669	SLC25A1	P53007	311 aa		11.99	□□□□□ -0.49
CPSF7-223	ENST00000544669	RAB30	Q15771	203 aa		11.99	□□□□□ -0.49
CPSF7-223	ENST00000544669	KRT74	Q7RTS7	529 aa		11.99	□□□□□ -0.49
CPSF7-223	ENST00000544669	NANOGNB	Q7Z5D8	188 aa		11.99	□□□□□ -0.49
CPSF7-223	ENST00000544669	FGD2	Q7Z6J4	655 aa		11.99	□□□□□ -0.49
CPSF7-223	ENST00000544669	ZNF671	Q8TAW3	534 aa		11.99	□□□□□ -0.49
CPSF7-223	ENST00000544669	TTC9	Q92623	222 aa		11.99	□□□□□ -0.49
CPSF7-223	ENST00000544669	SCMH1	Q96GD3	660 aa		11.99	□□□□□ -0.49
CPSF7-223	ENST00000544669	NECTIN4	Q96NY8	510 aa		11.99	□□□□□ -0.49
CPSF7-223	ENST00000544669	LDHAL6B	Q9BYZ2	381 aa	Predicted RBP	11.99	□□□□□ -0.49
CPSF7-223	ENST00000544669	ENKD1	Q9H0I2	346 aa		11.99	□□□□□ -0.49
CPSF7-223	ENST00000544669	SLC6A17	Q9H1V8	727 aa		11.99	□□□□□ -0.49
CPSF7-223	ENST00000544669	UCK1	Q9HA47	277 aa		11.99	□□□□□ -0.49
CPSF7-223	ENST00000544669	C12orf10	Q9HB07	376 aa		11.99	□□□□□ -0.49
CPSF7-223	ENST00000544669	EXOSC3	Q9NQT5	275 aa	Known RBP	11.99	□□□□□ -0.49
CPSF7-223	ENST00000544669	PRTFDC1	Q9NRG1	225 aa		11.99	□□□□□ -0.49
CPSF7-223	ENST00000544669	FBXO34	Q9NWN3	711 aa		11.99	□□□□□ -0.49
CPSF7-223	ENST00000544669	MCUB	Q9NWR8	336 aa		11.99	□□□□□ -0.49
CPSF7-223	ENST00000544669		A0A0G2JK05	382 aa		11.98	□□□□□ -0.49
CPSF7-223	ENST00000544669	GRXCR1	A8MXD5	290 aa		11.98	□□□□□ -0.49
CPSF7-223	ENST00000544669	EEF1E1	O43324	174 aa	Known RBP	11.98	□□□□□ -0.49
CPSF7-223	ENST00000544669	OR7A10	O76100	309 aa		11.98	□□□□□ -0.49
CPSF7-223	ENST00000544669	GLCE	O94923	617 aa		11.98	□□□□□ -0.49
CPSF7-223	ENST00000544669	NSA2	O95478	260 aa	Known RBP	11.98	□□□□□ -0.49
CPSF7-223	ENST00000544669	MRPL3	P09001	348 aa	Known RBP	11.98	□□□□□ -0.49
CPSF7-223	ENST00000544669	RAB40AL	P0C0E4	278 aa		11.98	□□□□□ -0.49
CPSF7-223	ENST00000544669	CT62	P0C5K7	136 aa		11.98	□□□□□ -0.49
CPSF7-223	ENST00000544669	ANXA3	P12429	323 aa		11.98	□□□□□ -0.49
CPSF7-223	ENST00000544669	ACVR1B	P36896	505 aa		11.98	□□□□□ -0.49
CPSF7-223	ENST00000544669	CENPA	P49450	140 aa		11.98	□□□□□ -0.49
CPSF7-223	ENST00000544669	E2F1	Q01094	437 aa		11.98	□□□□□ -0.49
CPSF7-223	ENST00000544669	HHEX	Q03014	270 aa		11.98	□□□□□ -0.49
CPSF7-223	ENST00000544669	PRTG	Q2VWP7	1150 aa		11.98	□□□□□ -0.49
CPSF7-223	ENST00000544669	WBP2NL	Q6ICG8	309 aa		11.98	□□□□□ -0.49
CPSF7-223	ENST00000544669	FAM220A	Q7Z4H9	259 aa		11.98	□□□□□ -0.49
CPSF7-223	ENST00000544669	TAF8	Q7Z7C8	310 aa		11.98	□□□□□ -0.49
CPSF7-223	ENST00000544669	MCAT	Q8IVS2	390 aa	Known RBP	11.98	□□□□□ -0.49
CPSF7-223	ENST00000544669	GPR135	Q8IZ08	494 aa		11.98	□□□□□ -0.49
CPSF7-223	ENST00000544669	CADM2	Q8N3J6	435 aa		11.98	□□□□□ -0.49
CPSF7-223	ENST00000544669	OR56B4	Q8NH76	319 aa		11.98	□□□□□ -0.49
CPSF7-223	ENST00000544669	RAB40A	Q8WXH6	277 aa		11.98	□□□□□ -0.49
CPSF7-223	ENST00000544669	WDR70	Q9NW82	654 aa		11.98	□□□□□ -0.49
CPSF7-223	ENST00000544669	USP36	Q9P275	1121 aa	Known RBP	11.98	□□□□□ -0.49
CPSF7-223	ENST00000544669	ZNF281	Q9Y2X9	895 aa		11.98	□□□□□ -0.49
CPSF7-223	ENST00000544669	MRPS2	Q9Y399	296 aa	Known RBP	11.98	□□□□□ -0.49
CPSF7-223	ENST00000544669	OR10H1	Q9Y4A9	318 aa		11.98	□□□□□ -0.49
CPSF7-223	ENST00000544669	IER3IP1	Q9Y5U9	82 aa		11.98	□□□□□ -0.49
CPSF7-223	ENST00000544669	NPIPA5	A0A0B4J1W7	369 aa		11.97	□□□□□ -0.49
CPSF7-223	ENST00000544669		E9PI62	339 aa		11.97	□□□□□ -0.49
CPSF7-223	ENST00000544669	NPIPA7	E9PJI5	369 aa		11.97	□□□□□ -0.49
CPSF7-223	ENST00000544669		H0Y8X5	98 aa		11.97	□□□□□ -0.49
CPSF7-223	ENST00000544669	PHYH	O14832	338 aa		11.97	□□□□□ -0.49
CPSF7-223	ENST00000544669	ZNF780A	O75290	641 aa	Predicted RBP	11.97	□□□□□ -0.49
CPSF7-223	ENST00000544669	RDH16	O75452	317 aa		11.97	□□□□□ -0.49
CPSF7-223	ENST00000544669	LDOC1	O95751	146 aa	Predicted RBP	11.97	□□□□□ -0.49
CPSF7-223	ENST00000544669	TCRB	P04435	133 aa		11.97	□□□□□ -0.49
CPSF7-223	ENST00000544669	NPIPA8	P0DM63	369 aa		11.97	□□□□□ -0.49
CPSF7-223	ENST00000544669	EDNRA	P25101	427 aa		11.97	□□□□□ -0.49
CPSF7-223	ENST00000544669	SNTB2	Q13425	540 aa	Known RBP	11.97	□□□□□ -0.49
CPSF7-223	ENST00000544669	INSL4	Q14641	139 aa		11.97	□□□□□ -0.49
CPSF7-223	ENST00000544669	TCTE1	Q5JU00	501 aa		11.97	□□□□□ -0.49
CPSF7-223	ENST00000544669	B3GLCT	Q6Y288	498 aa		11.97	□□□□□ -0.49
CPSF7-223	ENST00000544669	ASB18	Q6ZVZ8	466 aa		11.97	□□□□□ -0.49
CPSF7-223	ENST00000544669	DGLUCY	Q7Z3D6	616 aa		11.97	□□□□□ -0.49
CPSF7-223	ENST00000544669	NR2C2AP	Q86WQ0	139 aa		11.97	□□□□□ -0.49
CPSF7-223	ENST00000544669	C19orf47	Q8N9M1	422 aa	Known RBP	11.97	□□□□□ -0.49
CPSF7-223	ENST00000544669	TMEM52	Q8NDY8	209 aa		11.97	□□□□□ -0.49
CPSF7-223	ENST00000544669	OR5T3	Q8NGG3	340 aa		11.97	□□□□□ -0.49
CPSF7-223	ENST00000544669	PELI1	Q96FA3	418 aa		11.97	□□□□□ -0.49
CPSF7-223	ENST00000544669	CERS4	Q9HA82	394 aa		11.97	□□□□□ -0.49
CPSF7-223	ENST00000544669	PLEKHA1	Q9HB21	404 aa		11.97	□□□□□ -0.49
CPSF7-223	ENST00000544669	BRD7	Q9NPI1	651 aa		11.97	□□□□□ -0.49
CPSF7-223	ENST00000544669	EPHA6	Q9UF33	1036 aa		11.97	□□□□□ -0.49

Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms