RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 GRIP2Q9C0E4 1043 aa11.59□□□□□ -0.55
RTN3-213ENST00000543552 SLC38A1Q9H2H9 487 aa11.59□□□□□ -0.55
RTN3-213ENST00000543552 THUMPD1Q9NXG2 353 aaKnown RBP11.59□□□□□ -0.55
RTN3-213ENST00000543552 CISD1Q9NZ45 108 aaKnown RBP11.59□□□□□ -0.55
RTN3-213ENST00000543552 P2RX2Q9UBL9 471 aa11.59□□□□□ -0.55
RTN3-213ENST00000543552 MALT1Q9UDY8 824 aa11.59□□□□□ -0.55
RTN3-213ENST00000543552 TMED7Q9Y3B3 224 aa11.59□□□□□ -0.55
RTN3-213ENST00000543552 MAGED1Q9Y5V3 778 aaPredicted RBP11.59□□□□□ -0.55
RTN3-213ENST00000543552 TMEM120BA0PK00 339 aa11.58□□□□□ -0.56
RTN3-213ENST00000543552 DPRXA6NFQ7 191 aa11.58□□□□□ -0.56
RTN3-213ENST00000543552 ABCD4O14678 606 aa11.58□□□□□ -0.56
RTN3-213ENST00000543552 RAD51DO75771 328 aa11.58□□□□□ -0.56
RTN3-213ENST00000543552 CHRM4P08173 479 aa11.58□□□□□ -0.56
RTN3-213ENST00000543552 SOD3P08294 240 aa11.58□□□□□ -0.56
RTN3-213ENST00000543552 RPS4Y1P22090 263 aaKnown RBP11.58□□□□□ -0.56
RTN3-213ENST00000543552 PTAFRP25105 342 aa11.58□□□□□ -0.56
RTN3-213ENST00000543552 PCSK6P29122 969 aa11.58□□□□□ -0.56
RTN3-213ENST00000543552 EPHA3P29320 983 aa11.58□□□□□ -0.56
RTN3-213ENST00000543552 COPZ1P61923 177 aa11.58□□□□□ -0.56
RTN3-213ENST00000543552 TGFBR3Q03167 851 aa11.58□□□□□ -0.56
RTN3-213ENST00000543552 TNK1Q13470 666 aa11.58□□□□□ -0.56
RTN3-213ENST00000543552 MPP2Q14168 576 aa11.58□□□□□ -0.56
RTN3-213ENST00000543552 SYPL1Q16563 259 aa11.58□□□□□ -0.56
RTN3-213ENST00000543552 NRF1Q16656 503 aa11.58□□□□□ -0.56
RTN3-213ENST00000543552 GSTA3Q16772 222 aa11.58□□□□□ -0.56
RTN3-213ENST00000543552 LIN52Q52LA3 116 aa11.58□□□□□ -0.56
RTN3-213ENST00000543552 AGAP6Q5VW22 663 aa11.58□□□□□ -0.56
RTN3-213ENST00000543552 NXNQ6DKJ4 435 aa11.58□□□□□ -0.56
RTN3-213ENST00000543552 CASP12Q6UXS9 341 aa11.58□□□□□ -0.56
RTN3-213ENST00000543552 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.58□□□□□ -0.56
RTN3-213ENST00000543552 ADGRG3Q86Y34 549 aa11.58□□□□□ -0.56
RTN3-213ENST00000543552 ANKFN1Q8N957 763 aa11.58□□□□□ -0.56
RTN3-213ENST00000543552 ZG16BQ96DA0 208 aa11.58□□□□□ -0.56
RTN3-213ENST00000543552 ARL5BQ96KC2 179 aa11.58□□□□□ -0.56
RTN3-213ENST00000543552 TEX37Q96LM6 180 aa11.58□□□□□ -0.56
RTN3-213ENST00000543552 OR11A1Q9GZK7 315 aa11.58□□□□□ -0.56
RTN3-213ENST00000543552 ARMC7Q9H6L4 198 aa11.58□□□□□ -0.56
RTN3-213ENST00000543552 RMND5AQ9H871 391 aa11.58□□□□□ -0.56
RTN3-213ENST00000543552 NKIRAS1Q9NYS0 192 aa11.58□□□□□ -0.56
RTN3-213ENST00000543552 POU2F3Q9UKI9 436 aa11.58□□□□□ -0.56
RTN3-213ENST00000543552 GPR45Q9Y5Y3 372 aa11.58□□□□□ -0.56
RTN3-213ENST00000543552 CSPG4Q6UVK1 2322 aa11.58□□□□□ -0.56
RTN3-213ENST00000543552 PRR14LQ5THK1 2151 aa11.57□□□□□ -0.56
RTN3-213ENST00000543552 GOLGA8QA0A0J9YX86 632 aa11.57□□□□□ -0.56
RTN3-213ENST00000543552 PRAMEF27A3QJZ7 478 aa11.57□□□□□ -0.56
RTN3-213ENST00000543552 GOLGA8OA6NCC3 632 aa11.57□□□□□ -0.56
RTN3-213ENST00000543552 CLDN24A6NM45 220 aa11.57□□□□□ -0.56
RTN3-213ENST00000543552 GOLGA8NF8WBI6 632 aa11.57□□□□□ -0.56
RTN3-213ENST00000543552 AP3D1O14617 1153 aa11.57□□□□□ -0.56
RTN3-213ENST00000543552 ZNF500O60304 480 aaPredicted RBP11.57□□□□□ -0.56
RTN3-213ENST00000543552 SNNO75324 88 aaPredicted RBP11.57□□□□□ -0.56
RTN3-213ENST00000543552 BCAS1O75363 584 aaPredicted RBP11.57□□□□□ -0.56
RTN3-213ENST00000543552 SLC22A3O75751 556 aa11.57□□□□□ -0.56
RTN3-213ENST00000543552 ANP32DO95626 131 aa11.57□□□□□ -0.56
RTN3-213ENST00000543552 IGHV3-9P01782 118 aa11.57□□□□□ -0.56
RTN3-213ENST00000543552 TP53P04637 393 aaPredicted RBP11.57□□□□□ -0.56
RTN3-213ENST00000543552 GPIP06744 558 aa11.57□□□□□ -0.56
RTN3-213ENST00000543552 CCNA2P20248 432 aa11.57□□□□□ -0.56
RTN3-213ENST00000543552 CXCR1P25024 350 aa11.57□□□□□ -0.56
RTN3-213ENST00000543552 TACR3P29371 465 aa11.57□□□□□ -0.56
RTN3-213ENST00000543552 CRISP3P54108 245 aa11.57□□□□□ -0.56
RTN3-213ENST00000543552 SLC18A1P54219 525 aa11.57□□□□□ -0.56
RTN3-213ENST00000543552 H3F3AP84243 136 aa11.57□□□□□ -0.56
RTN3-213ENST00000543552 DMTNQ08495 405 aa11.57□□□□□ -0.56
RTN3-213ENST00000543552 FAPQ12884 760 aa11.57□□□□□ -0.56
RTN3-213ENST00000543552 PDCD4Q53EL6 469 aaKnown RBP11.57□□□□□ -0.56
RTN3-213ENST00000543552 MRPL2Q5T653 305 aaKnown RBP11.57□□□□□ -0.56
RTN3-213ENST00000543552 SLC22A25Q6T423 547 aa11.57□□□□□ -0.56
RTN3-213ENST00000543552 PAQR6Q6TCH4 344 aa11.57□□□□□ -0.56
RTN3-213ENST00000543552 MSANTD1Q6ZTZ1 278 aa11.57□□□□□ -0.56
RTN3-213ENST00000543552 HMGN2P46Q86SG4 172 aa11.57□□□□□ -0.56
RTN3-213ENST00000543552 DTX2Q86UW9 622 aa11.57□□□□□ -0.56
RTN3-213ENST00000543552 PIAS4Q8N2W9 510 aaPredicted RBP11.57□□□□□ -0.56
RTN3-213ENST00000543552 C17orf78Q8N4C9 275 aa11.57□□□□□ -0.56
RTN3-213ENST00000543552 C1orf162Q8NEQ5 155 aaPredicted RBP11.57□□□□□ -0.56
RTN3-213ENST00000543552 PNPT1Q8TCS8 783 aaKnown RBP11.57□□□□□ -0.56
RTN3-213ENST00000543552 ADAD1Q96M93 576 aaKnown RBP11.57□□□□□ -0.56
RTN3-213ENST00000543552 INPP5KQ9BT40 448 aa11.57□□□□□ -0.56
RTN3-213ENST00000543552 TRAF4Q9BUZ4 470 aaPredicted RBP11.57□□□□□ -0.56
RTN3-213ENST00000543552 WDR55Q9H6Y2 383 aaPredicted RBP11.57□□□□□ -0.56
RTN3-213ENST00000543552 UPB1Q9UBR1 384 aa11.57□□□□□ -0.56
RTN3-213ENST00000543552 DCTN4Q9UJW0 460 aa11.57□□□□□ -0.56
RTN3-213ENST00000543552 OSGIN1Q9UJX0 560 aa11.57□□□□□ -0.56
RTN3-213ENST00000543552 FAM234BA2RU67 622 aa11.56□□□□□ -0.56
RTN3-213ENST00000543552 SHISA9B4DS77 424 aa11.56□□□□□ -0.56
RTN3-213ENST00000543552 INAFM1C9JVW0 142 aa11.56□□□□□ -0.56
RTN3-213ENST00000543552 GSNP06396 782 aa11.56□□□□□ -0.56
RTN3-213ENST00000543552 KITP10721 976 aa11.56□□□□□ -0.56
RTN3-213ENST00000543552 BMP4P12644 408 aa11.56□□□□□ -0.56
RTN3-213ENST00000543552 EDNRAP25101 427 aa11.56□□□□□ -0.56
RTN3-213ENST00000543552 IL12AP29459 219 aa11.56□□□□□ -0.56
RTN3-213ENST00000543552 CDKN1AP38936 164 aa11.56□□□□□ -0.56
RTN3-213ENST00000543552 CDKN2CP42773 168 aa11.56□□□□□ -0.56
RTN3-213ENST00000543552 CRATP43155 626 aa11.56□□□□□ -0.56
RTN3-213ENST00000543552 EPS8Q12929 822 aa11.56□□□□□ -0.56
RTN3-213ENST00000543552 LARS2Q15031 903 aaKnown RBP11.56□□□□□ -0.56
RTN3-213ENST00000543552 PGGHGQ32M88 737 aa11.56□□□□□ -0.56
RTN3-213ENST00000543552 RNF220Q5VTB9 566 aa11.56□□□□□ -0.56
RTN3-213ENST00000543552 KLHL24Q6TFL4 600 aa11.56□□□□□ -0.56
RTN3-213ENST00000543552 ABHD12BQ7Z5M8 362 aaPredicted RBP11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms