RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 SLC35C1Q96A29 364 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 PDXPQ96GD0 296 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 ELMO2Q96JJ3 720 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 C2orf48Q96LS8 159 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 SAMD8Q96LT4 415 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 FAM218AQ96MZ4 157 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 SIGLEC12Q96PQ1 595 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 KCNK16Q96T55 309 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 SSX3Q99909 188 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 CCM2Q9BSQ5 444 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 CLEC7AQ9BXN2 247 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 NLNQ9BYT8 704 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 DDX47Q9H0S4 455 aaKnown RBP3.14□□□□□ -1.91
CD44-235ENST00000532339 FNDC4Q9H6D8 234 aaPredicted RBP3.14□□□□□ -1.91
CD44-235ENST00000532339 NMUR1Q9HB89 426 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 DMAP1Q9NPF5 467 aaPredicted RBP3.14□□□□□ -1.91
CD44-235ENST00000532339 ACTR3BQ9P1U1 418 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 POMT2Q9UKY4 750 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 EXOC7Q9UPT5 735 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 SCML2Q9UQR0 700 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 ERVK-19Q9WJR5 959 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 FADS3Q9Y5Q0 445 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 ATP8B3O60423 1300 aa3.14□□□□□ -1.91
CD44-235ENST00000532339 TCHHQ07283 1943 aa3.13□□□□□ -1.91
CD44-235ENST00000532339 A0A1W2PR80 420 aa3.13□□□□□ -1.91
CD44-235ENST00000532339 ARHGEF35A5YM69 484 aa3.13□□□□□ -1.91
CD44-235ENST00000532339 CFAP73A6NFT4 308 aa3.13□□□□□ -1.91
CD44-235ENST00000532339 IGLON5A6NGN9 336 aa3.13□□□□□ -1.91
CD44-235ENST00000532339 ARHGAP42A6NI28 874 aa3.13□□□□□ -1.91
CD44-235ENST00000532339 PP2D1A8MPX8 630 aa3.13□□□□□ -1.91
CD44-235ENST00000532339 TOX3O15405 576 aaPredicted RBP3.13□□□□□ -1.91
CD44-235ENST00000532339 P2RX6O15547 441 aa3.13□□□□□ -1.91
CD44-235ENST00000532339 TXNL1O43396 289 aa3.13□□□□□ -1.91
CD44-235ENST00000532339 TBL1XO60907 577 aa3.13□□□□□ -1.91
CD44-235ENST00000532339 HSF2BPO75031 334 aa3.13□□□□□ -1.91
CD44-235ENST00000532339 RALAP11233 206 aa3.13□□□□□ -1.91
CD44-235ENST00000532339 PVRP15151 417 aa3.13□□□□□ -1.91
CD44-235ENST00000532339 ABOP16442 354 aa3.13□□□□□ -1.91
CD44-235ENST00000532339 AADACP22760 399 aa3.13□□□□□ -1.91
CD44-235ENST00000532339 WARSP23381 471 aaKnown RBP3.13□□□□□ -1.91
CD44-235ENST00000532339 CTNNA2P26232 953 aa3.13□□□□□ -1.91
CD44-235ENST00000532339 SOX3P41225 446 aa3.13□□□□□ -1.91
CD44-235ENST00000532339 STK19P49842 368 aaPredicted RBP3.13□□□□□ -1.91
CD44-235ENST00000532339 BTG1P62324 171 aa3.13□□□□□ -1.91
CD44-235ENST00000532339 ACTG1P63261 375 aa3.13□□□□□ -1.91
CD44-235ENST00000532339 MFGE8Q08431 387 aaPredicted RBP3.13□□□□□ -1.91
CD44-235ENST00000532339 NFATC2Q13469 925 aa3.13□□□□□ -1.91
CD44-235ENST00000532339 PEX6Q13608 980 aa3.13□□□□□ -1.91
CD44-235ENST00000532339 IHHQ14623 411 aa3.13□□□□□ -1.91
CD44-235ENST00000532339 EFTUD2Q15029 972 aaKnown RBP eCLIP3.13□□□□□ -1.91
CD44-235ENST00000532339 KRT31Q15323 416 aa3.13□□□□□ -1.91
CD44-235ENST00000532339 DNAJC21Q5F1R6 531 aaKnown RBP3.13□□□□□ -1.91
CD44-235ENST00000532339 TMEM64Q6YI46 380 aa3.13□□□□□ -1.91
CD44-235ENST00000532339 C3P1Q6ZMU1 363 aa3.13□□□□□ -1.91
CD44-235ENST00000532339 WDR88Q6ZMY6 472 aa3.13□□□□□ -1.91
CD44-235ENST00000532339 LRRTM1Q86UE6 522 aa3.13□□□□□ -1.91
CD44-235ENST00000532339 DND1Q8IYX4 353 aaKnown RBP3.13□□□□□ -1.91
CD44-235ENST00000532339 SLC43A2Q8N370 569 aa3.13□□□□□ -1.91
CD44-235ENST00000532339 CCDC185Q8N715 623 aa3.13□□□□□ -1.91
CD44-235ENST00000532339 CCDC148Q8NFR7 591 aa3.13□□□□□ -1.91
CD44-235ENST00000532339 OR13C5Q8NGS8 318 aa3.13□□□□□ -1.91
CD44-235ENST00000532339 SMAP2Q8WU79 429 aaPredicted RBP3.13□□□□□ -1.91
CD44-235ENST00000532339 UBTD2Q8WUN7 234 aa3.13□□□□□ -1.91
CD44-235ENST00000532339 SMPDL3AQ92484 453 aa3.13□□□□□ -1.91
CD44-235ENST00000532339 ZBED6CLQ96FA7 236 aaPredicted RBP3.13□□□□□ -1.91
CD44-235ENST00000532339 PPP1R16AQ96I34 528 aa3.13□□□□□ -1.91
CD44-235ENST00000532339 GPR137Q96N19 417 aa3.13□□□□□ -1.91
CD44-235ENST00000532339 PCDHB18PQ96TA0 734 aa3.13□□□□□ -1.91
CD44-235ENST00000532339 NKX3-1Q99801 234 aaPredicted RBP3.13□□□□□ -1.91
CD44-235ENST00000532339 ZNF665Q9H7R5 613 aa3.13□□□□□ -1.91
CD44-235ENST00000532339 DCLRE1BQ9H816 532 aa3.13□□□□□ -1.91
CD44-235ENST00000532339 GPN1Q9HCN4 374 aaPredicted RBP3.13□□□□□ -1.91
CD44-235ENST00000532339 CLCA3PQ9Y6N3 262 aa3.13□□□□□ -1.91
CD44-235ENST00000532339 NYNRINQ9P2P1 1898 aaKnown RBP3.12□□□□□ -1.91
CD44-235ENST00000532339 A0A0U1RRA0 63 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 TRIM49BA6NDI0 452 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 NKX6-3A6NJ46 265 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 E7EWF7 191 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 SLC1A7O00341 560 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 CLDN5O00501 218 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 ZNF195O14628 629 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 ATP6V1G1O75348 118 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 GMNNO75496 209 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 MT-ATP6P00846 226 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 EPOP01588 193 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 KLK3P07288 261 aaPredicted RBP3.12□□□□□ -1.91
CD44-235ENST00000532339 CTSLP07711 333 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 CT45A8P0DMV1 189 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 CT45A9P0DMV2 189 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 ADRB3P13945 408 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 ACADSP16219 412 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 GCFC2P16383 781 aaKnown RBP3.12□□□□□ -1.91
CD44-235ENST00000532339 MX1P20591 662 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 GATA2P23769 480 aaPredicted RBP3.12□□□□□ -1.91
CD44-235ENST00000532339 OTX2P32243 289 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 CHRNA3P32297 505 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 NSFP46459 744 aaKnown RBP3.12□□□□□ -1.91
CD44-235ENST00000532339 SGSHP51688 502 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 NDST1P52848 882 aa3.12□□□□□ -1.91
CD44-235ENST00000532339 XGP55808 180 aa3.12□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms