RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 GUSBP1Q15486 140 aa12.97□□□□□ -0.33
CPSF1-206ENST00000531480 MTX3Q5HYI7 312 aa12.97□□□□□ -0.33
CPSF1-206ENST00000531480 PDSS1Q5T2R2 415 aa12.97□□□□□ -0.33
CPSF1-206ENST00000531480 HBMQ6B0K9 141 aa12.97□□□□□ -0.33
CPSF1-206ENST00000531480 POMZP3Q6PJE2 187 aa12.97□□□□□ -0.33
CPSF1-206ENST00000531480 TMPPEQ6ZT21 453 aa12.97□□□□□ -0.33
CPSF1-206ENST00000531480 NCCRP1Q6ZVX7 275 aaPredicted RBP12.97□□□□□ -0.33
CPSF1-206ENST00000531480 VTCN1Q7Z7D3 282 aa12.97□□□□□ -0.33
CPSF1-206ENST00000531480 CARM1Q86X55 608 aa12.97□□□□□ -0.33
CPSF1-206ENST00000531480 CADM2Q8N3J6 435 aa12.97□□□□□ -0.33
CPSF1-206ENST00000531480 STK35Q8TDR2 534 aa12.97□□□□□ -0.33
CPSF1-206ENST00000531480 ITLN2Q8WWU7 325 aaPredicted RBP12.97□□□□□ -0.33
CPSF1-206ENST00000531480 SMPDL3BQ92485 455 aa12.97□□□□□ -0.33
CPSF1-206ENST00000531480 OSTF1Q92882 214 aa12.97□□□□□ -0.33
CPSF1-206ENST00000531480 CPNE4Q96A23 557 aaPredicted RBP12.97□□□□□ -0.33
CPSF1-206ENST00000531480 ZNF845Q96IR2 970 aaPredicted RBP12.97□□□□□ -0.33
CPSF1-206ENST00000531480 ARL5BQ96KC2 179 aa12.97□□□□□ -0.33
CPSF1-206ENST00000531480 MCHR1Q99705 422 aa12.97□□□□□ -0.33
CPSF1-206ENST00000531480 TM9SF2Q99805 663 aa12.97□□□□□ -0.33
CPSF1-206ENST00000531480 ZNF426Q9BUY5 554 aa12.97□□□□□ -0.33
CPSF1-206ENST00000531480 PRR14Q9BWN1 585 aa12.97□□□□□ -0.33
CPSF1-206ENST00000531480 RNF122Q9H9V4 155 aa12.97□□□□□ -0.33
CPSF1-206ENST00000531480 ALKBH4Q9NXW9 302 aa12.97□□□□□ -0.33
CPSF1-206ENST00000531480 ACTR3BQ9P1U1 418 aa12.97□□□□□ -0.33
CPSF1-206ENST00000531480 RPS6KA6Q9UK32 745 aa12.97□□□□□ -0.33
CPSF1-206ENST00000531480 SH3GLB1Q9Y371 365 aa12.97□□□□□ -0.33
CPSF1-206ENST00000531480 SPTBN1Q01082 2364 aaKnown RBP12.96□□□□□ -0.33
CPSF1-206ENST00000531480 USP9YO00507 2555 aaPredicted RBP12.96□□□□□ -0.33
CPSF1-206ENST00000531480 A0A087WUJ7 227 aa12.96□□□□□ -0.33
CPSF1-206ENST00000531480 A8MVM7 634 aa12.96□□□□□ -0.33
CPSF1-206ENST00000531480 TGM6O95932 706 aa12.96□□□□□ -0.33
CPSF1-206ENST00000531480 OPN1LWP04000 364 aa12.96□□□□□ -0.33
CPSF1-206ENST00000531480 SEMG1P04279 462 aa12.96□□□□□ -0.33
CPSF1-206ENST00000531480 RNF224P0DH78 156 aa12.96□□□□□ -0.33
CPSF1-206ENST00000531480 PNMTP11086 282 aa12.96□□□□□ -0.33
CPSF1-206ENST00000531480 TCN1P20061 433 aaPredicted RBP12.96□□□□□ -0.33
CPSF1-206ENST00000531480 CXCR1P25024 350 aa12.96□□□□□ -0.33
CPSF1-206ENST00000531480 MSX2P35548 267 aaPredicted RBP12.96□□□□□ -0.33
CPSF1-206ENST00000531480 CARD18P57730 90 aa12.96□□□□□ -0.33
CPSF1-206ENST00000531480 H3F3AP84243 136 aa12.96□□□□□ -0.33
CPSF1-206ENST00000531480 EGR4Q05215 589 aa12.96□□□□□ -0.33
CPSF1-206ENST00000531480 PON3Q15166 354 aa12.96□□□□□ -0.33
CPSF1-206ENST00000531480 ZNF239Q16600 458 aaKnown RBP12.96□□□□□ -0.33
CPSF1-206ENST00000531480 ENTPD8Q5MY95 495 aa12.96□□□□□ -0.33
CPSF1-206ENST00000531480 TSEN54Q7Z6J9 526 aaKnown RBP12.96□□□□□ -0.33
CPSF1-206ENST00000531480 ZNF808Q8N4W9 903 aaPredicted RBP12.96□□□□□ -0.33
CPSF1-206ENST00000531480 C9orf106Q8NAJ2 232 aa12.96□□□□□ -0.33
CPSF1-206ENST00000531480 ADAMTS16Q8TE57 1224 aa12.96□□□□□ -0.33
CPSF1-206ENST00000531480 SSC4DQ8WTU2 575 aa12.96□□□□□ -0.33
CPSF1-206ENST00000531480 GEMIN6Q8WXD5 167 aaKnown RBP12.96□□□□□ -0.33
CPSF1-206ENST00000531480 RND1Q92730 232 aa12.96□□□□□ -0.33
CPSF1-206ENST00000531480 FAM162AQ96A26 154 aa12.96□□□□□ -0.33
CPSF1-206ENST00000531480 ASB9Q96DX5 294 aa12.96□□□□□ -0.33
CPSF1-206ENST00000531480 SLC47A1Q96FL8 570 aa12.96□□□□□ -0.33
CPSF1-206ENST00000531480 TRIB1Q96RU8 372 aa12.96□□□□□ -0.33
CPSF1-206ENST00000531480 SRXN1Q9BYN0 137 aa12.96□□□□□ -0.33
CPSF1-206ENST00000531480 OR11A1Q9GZK7 315 aa12.96□□□□□ -0.33
CPSF1-206ENST00000531480 TMEM27Q9HBJ8 222 aa12.96□□□□□ -0.33
CPSF1-206ENST00000531480 SAMD4AQ9UPU9 718 aaKnown RBP12.96□□□□□ -0.33
CPSF1-206ENST00000531480 CACNA1CQ13936 2221 aa12.95□□□□□ -0.34
CPSF1-206ENST00000531480 IGKV1D-42A0A075B6H8 117 aa12.95□□□□□ -0.34
CPSF1-206ENST00000531480 A0A0G2JNJ9 132 aa12.95□□□□□ -0.34
CPSF1-206ENST00000531480 ZC3H12DA2A288 527 aaKnown RBP12.95□□□□□ -0.34
CPSF1-206ENST00000531480 TRAPPC13A5PLN9 417 aa12.95□□□□□ -0.34
CPSF1-206ENST00000531480 SLC22A20A6NK97 555 aa12.95□□□□□ -0.34
CPSF1-206ENST00000531480 ACOT8O14734 319 aa12.95□□□□□ -0.34
CPSF1-206ENST00000531480 CHP2O43745 196 aa12.95□□□□□ -0.34
CPSF1-206ENST00000531480 CXCL13O43927 109 aa12.95□□□□□ -0.34
CPSF1-206ENST00000531480 ZG16O60844 167 aa12.95□□□□□ -0.34
CPSF1-206ENST00000531480 FKBP6O75344 327 aa12.95□□□□□ -0.34
CPSF1-206ENST00000531480 AGFG2O95081 481 aa12.95□□□□□ -0.34
CPSF1-206ENST00000531480 CRHP06850 196 aa12.95□□□□□ -0.34
CPSF1-206ENST00000531480 THRBP10828 461 aa12.95□□□□□ -0.34
CPSF1-206ENST00000531480 FCGR2AP12318 317 aa12.95□□□□□ -0.34
CPSF1-206ENST00000531480 TNFRSF1BP20333 461 aa12.95□□□□□ -0.34
CPSF1-206ENST00000531480 SLC7A1P30825 629 aa12.95□□□□□ -0.34
CPSF1-206ENST00000531480 EIF1AXP47813 144 aaKnown RBP12.95□□□□□ -0.34
CPSF1-206ENST00000531480 OR1E2P47887 323 aa12.95□□□□□ -0.34
CPSF1-206ENST00000531480 DIO1P49895 249 aa12.95□□□□□ -0.34
CPSF1-206ENST00000531480 AGFG1P52594 562 aaKnown RBP12.95□□□□□ -0.34
CPSF1-206ENST00000531480 CDH12P55289 794 aa12.95□□□□□ -0.34
CPSF1-206ENST00000531480 MS4A2Q01362 244 aa12.95□□□□□ -0.34
CPSF1-206ENST00000531480 MYBPHQ13203 477 aa12.95□□□□□ -0.34
CPSF1-206ENST00000531480 RIPK1Q13546 671 aa12.95□□□□□ -0.34
CPSF1-206ENST00000531480 IQCCQ4KMZ1 466 aa12.95□□□□□ -0.34
CPSF1-206ENST00000531480 IFI44LQ53G44 452 aa12.95□□□□□ -0.34
CPSF1-206ENST00000531480 ALG10BQ5I7T1 473 aa12.95□□□□□ -0.34
CPSF1-206ENST00000531480 LCN8Q6JVE9 175 aa12.95□□□□□ -0.34
CPSF1-206ENST00000531480 ZFP1Q6P2D0 407 aa12.95□□□□□ -0.34
CPSF1-206ENST00000531480 XKRXQ6PP77 449 aa12.95□□□□□ -0.34
CPSF1-206ENST00000531480 C5orf46Q6UWT4 87 aa12.95□□□□□ -0.34
CPSF1-206ENST00000531480 CHMP1BQ7LBR1 199 aa12.95□□□□□ -0.34
CPSF1-206ENST00000531480 DHFR2Q86XF0 187 aa12.95□□□□□ -0.34
CPSF1-206ENST00000531480 NAXEQ8NCW5 288 aa12.95□□□□□ -0.34
CPSF1-206ENST00000531480 OR10Q1Q8NGQ4 319 aa12.95□□□□□ -0.34
CPSF1-206ENST00000531480 OR6S1Q8NH40 331 aa12.95□□□□□ -0.34
CPSF1-206ENST00000531480 VANGL1Q8TAA9 524 aaPredicted RBP12.95□□□□□ -0.34
CPSF1-206ENST00000531480 FNDC9Q8TBE3 224 aa12.95□□□□□ -0.34
CPSF1-206ENST00000531480 RNF128Q8TEB7 428 aa12.95□□□□□ -0.34
CPSF1-206ENST00000531480 DDIT4LQ96D03 193 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms