RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 OR2L3Q8NG85 312 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 OR5W2Q8NH69 310 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 SAMD8Q96LT4 415 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 LPAR4Q99677 370 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 B3GAT2Q9NPZ5 323 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.24□□□□□ -0.45
TCOF1-213ENST00000514442 ASPDHA6ND91 283 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 H3BNC9 293 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 IGLV3-27P01718 113 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 GABRB1P18505 474 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 EPHA2P29317 976 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 CSNK1EP49674 416 aaKnown RBP12.24□□□□□ -0.45
TCOF1-213ENST00000514442 SNRPGP62308 76 aaKnown RBP12.24□□□□□ -0.45
TCOF1-213ENST00000514442 ACTC1P68032 377 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 ACTA1P68133 377 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 PDSS1Q5T2R2 415 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 LYSMD4Q5XG99 296 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 KIAA0895LQ68EN5 471 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 CDRT4Q8N9R6 151 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 PNLDC1Q8NA58 520 aaKnown RBP12.24□□□□□ -0.45
TCOF1-213ENST00000514442 THAP4Q8WY91 577 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 HLA-CQ95604 372 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 HS6ST2Q96MM7 605 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 TMEM121BQ9BXQ6 578 aaPredicted RBP12.24□□□□□ -0.45
TCOF1-213ENST00000514442 PDFQ9HBH1 243 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 FBXL2Q9UKC9 423 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 RCE1Q9Y256 329 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 GXYLT2A0PJZ3 443 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 PRKRAO75569 313 aaKnown RBP12.24□□□□□ -0.45
TCOF1-213ENST00000514442 IFNA4P05014 189 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 ITGA5P08648 1049 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 CD34P28906 385 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 OR3A2P47893 321 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 SYPL1Q16563 259 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 TPRA1Q86W33 373 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 ZFP82Q8N141 532 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 OR7G2Q8NG99 324 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 OR4M1Q8NGD0 313 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 OR52R1Q8NGF1 315 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 SNIP1Q8TAD8 396 aaKnown RBP12.24□□□□□ -0.45
TCOF1-213ENST00000514442 NUDT8Q8WV74 236 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 PNPLA2Q96AD5 504 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 POTEKPQ9BYX7 375 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 LRIT1Q9P2V4 623 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 FARSAQ9Y285 508 aaKnown RBP12.24□□□□□ -0.45
TCOF1-213ENST00000514442 COL4A5P29400 1685 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 SEC14L5O43304 696 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 MAP2K6P52564 334 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 ARHGDIBP52566 201 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 ART1P52961 327 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 HORMAD2Q8N7B1 307 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 BRIX1Q8TDN6 353 aaKnown RBP12.24□□□□□ -0.45
TCOF1-213ENST00000514442 ADAMTS18Q8TE60 1221 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 ALG8Q9BVK2 526 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 MBNL1Q9NR56 388 aaKnown RBP12.24□□□□□ -0.45
TCOF1-213ENST00000514442 SHANK3Q9BYB0 1731 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 C17orf113A0A1B0GUU1 675 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 PPP1R3DO95685 299 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 UCHL1P09936 223 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 MTHFD2P13995 350 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 MTNR1BP49286 362 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 MRPS10P82664 201 aaKnown RBP12.24□□□□□ -0.45
TCOF1-213ENST00000514442 LEXMQ3ZCV2 418 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 GPR139Q6DWJ6 353 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 FBXO42Q6P3S6 717 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 ZNF283Q8N7M2 679 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 OR52I1Q8NGK6 324 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 SLC7A13Q8TCU3 470 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 CASTOR1Q8WTX7 329 aa12.24□□□□□ -0.45
TCOF1-213ENST00000514442 USP36Q9P275 1121 aaKnown RBP12.24□□□□□ -0.45
TCOF1-213ENST00000514442 FAM171A2A8MVW0 826 aa12.23□□□□□ -0.45
TCOF1-213ENST00000514442 NPIPA2E9PIF3 369 aa12.23□□□□□ -0.45
TCOF1-213ENST00000514442 NPIPA3F8WFD2 350 aa12.23□□□□□ -0.45
TCOF1-213ENST00000514442 UPK1AO00322 258 aa12.23□□□□□ -0.45
TCOF1-213ENST00000514442 FABP1P07148 127 aa12.23□□□□□ -0.45
TCOF1-213ENST00000514442 POU3F3P20264 500 aaPredicted RBP12.23□□□□□ -0.45
TCOF1-213ENST00000514442 SRP9P49458 86 aaKnown RBP12.23□□□□□ -0.45
TCOF1-213ENST00000514442 SORDQ00796 357 aa12.23□□□□□ -0.45
TCOF1-213ENST00000514442 APOOLQ6UXV4 268 aa12.23□□□□□ -0.45
TCOF1-213ENST00000514442 SLCO4C1Q6ZQN7 724 aa12.23□□□□□ -0.45
TCOF1-213ENST00000514442 CYB561A3Q8NBI2 242 aa12.23□□□□□ -0.45
TCOF1-213ENST00000514442 NLGN4YQ8NFZ3 816 aaPredicted RBP12.23□□□□□ -0.45
TCOF1-213ENST00000514442 PAQR8Q8TEZ7 354 aa12.23□□□□□ -0.45
TCOF1-213ENST00000514442 I6L893 689 aaPredicted RBP12.23□□□□□ -0.45
TCOF1-213ENST00000514442 AIFM1O95831 613 aa12.23□□□□□ -0.45
TCOF1-213ENST00000514442 RRASP10301 218 aa12.23□□□□□ -0.45
TCOF1-213ENST00000514442 ZNF35P13682 527 aa12.23□□□□□ -0.45
TCOF1-213ENST00000514442 PGAM2P15259 253 aa12.23□□□□□ -0.45
TCOF1-213ENST00000514442 ITGB8P26012 769 aa12.23□□□□□ -0.45
TCOF1-213ENST00000514442 HOXA9P31269 272 aa12.23□□□□□ -0.45
TCOF1-213ENST00000514442 PTH2RP49190 550 aa12.23□□□□□ -0.45
TCOF1-213ENST00000514442 MAT1AQ00266 395 aaKnown RBP12.23□□□□□ -0.45
TCOF1-213ENST00000514442 LRIF1Q5T3J3 769 aa12.23□□□□□ -0.45
TCOF1-213ENST00000514442 C9orf62Q8N4C0 152 aa12.23□□□□□ -0.45
TCOF1-213ENST00000514442 HDAC8Q9BY41 377 aa12.23□□□□□ -0.45
TCOF1-213ENST00000514442 METTL8Q9H825 291 aaKnown RBP12.23□□□□□ -0.45
TCOF1-213ENST00000514442 POT1Q9NUX5 634 aa12.23□□□□□ -0.45
TCOF1-213ENST00000514442 SLC25A37Q9NYZ2 338 aa12.23□□□□□ -0.45
TCOF1-213ENST00000514442 ABRACLQ9P1F3 81 aa12.23□□□□□ -0.45
TCOF1-213ENST00000514442 XIRP1Q702N8 1843 aaKnown RBP12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms