RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 NOX4Q9NPH5 578 aa8.53□□□□□ -1.04
LIMCH1-215ENST00000512632 ZNF224Q9NZL3 707 aa8.53□□□□□ -1.04
LIMCH1-215ENST00000512632 KLK11Q9UBX7 282 aa8.53□□□□□ -1.04
LIMCH1-215ENST00000512632 SLC17A4Q9Y2C5 497 aa8.53□□□□□ -1.04
LIMCH1-215ENST00000512632 TSFMP43897 325 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-215ENST00000512632 VEGFCP49767 419 aa8.53□□□□□ -1.04
LIMCH1-215ENST00000512632 NDUFAF6Q330K2 333 aa8.53□□□□□ -1.04
LIMCH1-215ENST00000512632 ALG10BQ5I7T1 473 aa8.53□□□□□ -1.04
LIMCH1-215ENST00000512632 USP53Q70EK8 1073 aa8.53□□□□□ -1.04
LIMCH1-215ENST00000512632 BTN2A1Q7KYR7 527 aa8.53□□□□□ -1.04
LIMCH1-215ENST00000512632 FCRLAQ7L513 359 aa8.53□□□□□ -1.04
LIMCH1-215ENST00000512632 OR2A5Q96R48 311 aa8.53□□□□□ -1.04
LIMCH1-215ENST00000512632 DHRS9Q9BPW9 319 aa8.53□□□□□ -1.04
LIMCH1-215ENST00000512632 SEC22CQ9BRL7 303 aa8.53□□□□□ -1.04
LIMCH1-215ENST00000512632 CFHR5Q9BXR6 569 aa8.53□□□□□ -1.04
LIMCH1-215ENST00000512632 INPP5EQ9NRR6 644 aa8.53□□□□□ -1.04
LIMCH1-215ENST00000512632 ZNF346Q9UL40 294 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-215ENST00000512632 A0A1B0GVT2 93 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 ARL6IP5O75915 188 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 ZP1P60852 638 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 RPS15AP62244 130 aaKnown RBP8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 PITPNAQ00169 270 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 HSF2Q03933 536 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 RUNX3Q13761 415 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 CDK5R1Q15078 307 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 TRAM1Q15629 374 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 HSD17B12Q53GQ0 312 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 PRRT3Q5FWE3 981 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 SLC25A25Q6KCM7 469 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 OR52I2Q8NH67 350 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 NMNAT3Q96T66 252 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 DDOQ99489 341 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 SARGQ9BW04 601 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 CERS4Q9HA82 394 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 SELENOFO60613 162 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 RPP14O95059 124 aaKnown RBP8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 EMDP50402 254 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 POU6F2P78424 691 aaPredicted RBP8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 CHMP1BQ7LBR1 199 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 CDRT4Q8N9R6 151 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 OR2T4Q8NH00 348 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 OR1E3Q8WZA6 343 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 DIABLOQ9NR28 239 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 POT1Q9NUX5 634 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 ABRACLQ9P1F3 81 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 COPS3Q9UNS2 423 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 CAMK2AQ9UQM7 478 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 MEIKINA0A087WXM9 373 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 GPR89AB7ZAQ6 455 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 IFNGP01579 166 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 GPR89BP0CG08 455 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 SULT1A3P0DMM9 295 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 SULT1A4P0DMN0 295 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 CD53P19397 219 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 SLC2A5P22732 501 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 SLC6A6P31641 620 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 BLVRAP53004 296 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 RPS21P63220 83 aaKnown RBP8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 COMMD7Q86VX2 200 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 OR56B4Q8NH76 319 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 PATE1Q8WXA2 126 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 WDR89Q96FK6 387 aaPredicted RBP8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 SERINC2Q96SA4 455 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 MCCC2Q9HCC0 563 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 MRPL39Q9NYK5 338 aaKnown RBP8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 NTMQ9P121 344 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 SLC22A7Q9Y694 548 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 CHD9Q3L8U1 2897 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 LINC00862A6NCI5 91 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 GRXCR1A8MXD5 290 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 MCIDASD6RGH6 385 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 ARPC1BO15143 372 aaKnown RBP8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 PRKNO60260 465 aaPredicted RBP8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 GATBO75879 557 aaKnown RBP8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 SOX2P48431 317 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 TSPAN5P62079 268 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 RPS11P62280 158 aaKnown RBP eCLIP8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 KLF9Q13886 244 aaPredicted RBP8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 FIGLAQ6QHK4 219 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 DGAT2L6Q6ZPD8 337 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 SFTPA2Q8IWL1 248 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 SAMD14Q8IZD0 417 aaPredicted RBP8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 HAVCR2Q8TDQ0 301 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 NXPE2Q96DL1 559 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 SMIM19Q96E16 107 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 HSPA12BQ96MM6 686 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 C20orf85Q9H1P6 137 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 RSPH9Q9H1X1 276 aaPredicted RBP8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 FKRPQ9H9S5 495 aa8.52□□□□□ -1.05
LIMCH1-215ENST00000512632 LOC105371267A0A1B0GV96 52 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 OR6C74A6NCV1 312 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 OR2W5A6NFC9 320 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 C4orf47A7E2U8 309 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 A8MUA0 341 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 PIN1P1O15428 100 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 C5AR1P21730 350 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 CCR9P51686 369 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 PON3Q15166 354 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 TMEM31Q5JXX7 168 aa8.51□□□□□ -1.05
LIMCH1-215ENST00000512632 NLRC3Q7RTR2 1065 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms