RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 C12orf10Q9HB07 376 aa11□□□□□ -0.65
NUP54-202ENST00000502850 ZNF221Q9UK13 617 aa11□□□□□ -0.65
NUP54-202ENST00000502850 ELOA3DA6NLF2 546 aaPredicted RBP10.99□□□□□ -0.65
NUP54-202ENST00000502850 C17orf105B2RV13 164 aa10.99□□□□□ -0.65
NUP54-202ENST00000502850 TMEM127O75204 238 aa10.99□□□□□ -0.65
NUP54-202ENST00000502850 REM1O75628 298 aa10.99□□□□□ -0.65
NUP54-202ENST00000502850 CCNKO75909 580 aa10.99□□□□□ -0.65
NUP54-202ENST00000502850 OR7A10O76100 309 aa10.99□□□□□ -0.65
NUP54-202ENST00000502850 IL33O95760 270 aa10.99□□□□□ -0.65
NUP54-202ENST00000502850 UBL4AP11441 157 aa10.99□□□□□ -0.65
NUP54-202ENST00000502850 APEHP13798 732 aaKnown RBP10.99□□□□□ -0.65
NUP54-202ENST00000502850 MAOAP21397 527 aa10.99□□□□□ -0.65
NUP54-202ENST00000502850 CD1CP29017 333 aa10.99□□□□□ -0.65
NUP54-202ENST00000502850 RPL4P36578 427 aaKnown RBP10.99□□□□□ -0.65
NUP54-202ENST00000502850 GRK6P43250 576 aa10.99□□□□□ -0.65
NUP54-202ENST00000502850 PPICP45877 212 aa10.99□□□□□ -0.65
NUP54-202ENST00000502850 HTR3AP46098 478 aa10.99□□□□□ -0.65
NUP54-202ENST00000502850 SLC6A8P48029 635 aa10.99□□□□□ -0.65
NUP54-202ENST00000502850 RFX2P48378 723 aa10.99□□□□□ -0.65
NUP54-202ENST00000502850 ARL4DP49703 201 aa10.99□□□□□ -0.65
NUP54-202ENST00000502850 MAT1AQ00266 395 aaKnown RBP10.99□□□□□ -0.65
NUP54-202ENST00000502850 FZD5Q13467 585 aa10.99□□□□□ -0.65
NUP54-202ENST00000502850 IL18Q14116 193 aa10.99□□□□□ -0.65
NUP54-202ENST00000502850 PON3Q15166 354 aa10.99□□□□□ -0.65
NUP54-202ENST00000502850 QPRTQ15274 297 aa10.99□□□□□ -0.65
NUP54-202ENST00000502850 ELOA3BQ3SY89 546 aa10.99□□□□□ -0.65
NUP54-202ENST00000502850 KLHL26Q53HC5 615 aa10.99□□□□□ -0.65
NUP54-202ENST00000502850 YOD1Q5VVQ6 348 aaPredicted RBP10.99□□□□□ -0.65
NUP54-202ENST00000502850 HACD4Q5VWC8 232 aa10.99□□□□□ -0.65
NUP54-202ENST00000502850 RSBN1Q5VWQ0 802 aaPredicted RBP10.99□□□□□ -0.65
NUP54-202ENST00000502850 ARL9Q6T311 187 aa10.99□□□□□ -0.65
NUP54-202ENST00000502850 Q8N402 240 aa10.99□□□□□ -0.65
NUP54-202ENST00000502850 CELF2-AS1Q8N7Q2 184 aa10.99□□□□□ -0.65
NUP54-202ENST00000502850 FRMD1Q8N878 549 aa10.99□□□□□ -0.65
NUP54-202ENST00000502850 ELOA3Q8NG57 546 aa10.99□□□□□ -0.65
NUP54-202ENST00000502850 OR52E2Q8NGJ4 325 aa10.99□□□□□ -0.65
NUP54-202ENST00000502850 PHYHIPQ92561 330 aa10.99□□□□□ -0.65
NUP54-202ENST00000502850 C4orf36Q96KX1 117 aa10.99□□□□□ -0.65
NUP54-202ENST00000502850 TBX5Q99593 518 aa10.99□□□□□ -0.65
NUP54-202ENST00000502850 HCAR1Q9BXC0 346 aa10.99□□□□□ -0.65
NUP54-202ENST00000502850 TPSD1Q9BZJ3 242 aa10.99□□□□□ -0.65
NUP54-202ENST00000502850 ENKD1Q9H0I2 346 aa10.99□□□□□ -0.65
NUP54-202ENST00000502850 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP10.99□□□□□ -0.657e-10■■■■■ 34.7
NUP54-202ENST00000502850 ERVMER34-1Q9H9K5 563 aa10.99□□□□□ -0.65
NUP54-202ENST00000502850 SACM1LQ9NTJ5 587 aa10.99□□□□□ -0.65
NUP54-202ENST00000502850 DTX4Q9Y2E6 619 aa10.99□□□□□ -0.65
NUP54-202ENST00000502850 CLDN16Q9Y5I7 305 aa10.99□□□□□ -0.65
NUP54-202ENST00000502850 THADAQ6YHU6 1953 aa10.99□□□□□ -0.65
NUP54-202ENST00000502850 ANKRD61A6NGH8 418 aa10.98□□□□□ -0.65
NUP54-202ENST00000502850 FRG2CA6NGY1 282 aa10.98□□□□□ -0.65
NUP54-202ENST00000502850 IMPA2O14732 288 aa10.98□□□□□ -0.65
NUP54-202ENST00000502850 HPGDSO60760 199 aa10.98□□□□□ -0.65
NUP54-202ENST00000502850 ATP6V1G1O75348 118 aa10.98□□□□□ -0.65
NUP54-202ENST00000502850 GATBO75879 557 aaKnown RBP10.98□□□□□ -0.65
NUP54-202ENST00000502850 ARL6IP5O75915 188 aa10.98□□□□□ -0.65
NUP54-202ENST00000502850 WNT1P04628 370 aa10.98□□□□□ -0.65
NUP54-202ENST00000502850 CTSBP07858 339 aa10.98□□□□□ -0.65
NUP54-202ENST00000502850 NGFRP08138 427 aa10.98□□□□□ -0.65
NUP54-202ENST00000502850 MRPL3P09001 348 aaKnown RBP10.98□□□□□ -0.65
NUP54-202ENST00000502850 RBMS1P29558 406 aaKnown RBP10.98□□□□□ -0.65
NUP54-202ENST00000502850 NXPH1P58417 271 aa10.98□□□□□ -0.65
NUP54-202ENST00000502850 RPS4XP62701 263 aaKnown RBP10.98□□□□□ -0.65
NUP54-202ENST00000502850 BTG2P78543 158 aa10.98□□□□□ -0.65
NUP54-202ENST00000502850 DAB2P98082 770 aa10.98□□□□□ -0.65
NUP54-202ENST00000502850 ZNF85Q03923 595 aa10.98□□□□□ -0.65
NUP54-202ENST00000502850 CD300CQ08708 224 aa10.98□□□□□ -0.65
NUP54-202ENST00000502850 COL9A2Q14055 689 aaPredicted RBP10.98□□□□□ -0.65
NUP54-202ENST00000502850 CCDC58Q4VC31 144 aa10.98□□□□□ -0.65
NUP54-202ENST00000502850 ZNF362Q5T0B9 420 aaPredicted RBP10.98□□□□□ -0.65
NUP54-202ENST00000502850 DMKNQ6E0U4 476 aaPredicted RBP10.98□□□□□ -0.65
NUP54-202ENST00000502850 FAAH2Q6GMR7 532 aa10.98□□□□□ -0.65
NUP54-202ENST00000502850 RDH10Q8IZV5 341 aa10.98□□□□□ -0.65
NUP54-202ENST00000502850 SCAIQ8N9R8 606 aa10.98□□□□□ -0.65
NUP54-202ENST00000502850 OR5M3Q8NGP4 307 aa10.98□□□□□ -0.65
NUP54-202ENST00000502850 LIPHQ8WWY8 451 aa10.98□□□□□ -0.65
NUP54-202ENST00000502850 RLN3Q8WXF3 142 aa10.98□□□□□ -0.65
NUP54-202ENST00000502850 C3orf49Q96BT1 292 aa10.98□□□□□ -0.65
NUP54-202ENST00000502850 MFRPQ9BY79 579 aa10.98□□□□□ -0.65
NUP54-202ENST00000502850 RNF32Q9H0A6 362 aa10.98□□□□□ -0.65
NUP54-202ENST00000502850 PPP1R3EQ9H7J1 279 aa10.98□□□□□ -0.65
NUP54-202ENST00000502850 CUTCQ9NTM9 273 aa10.98□□□□□ -0.65
NUP54-202ENST00000502850 FAM86C1Q9NVL1 165 aa10.98□□□□□ -0.65
NUP54-202ENST00000502850 RABL2AQ9UBK7 228 aaPredicted RBP10.98□□□□□ -0.65
NUP54-202ENST00000502850 CA14Q9ULX7 337 aa10.98□□□□□ -0.65
NUP54-202ENST00000502850 RABL2BQ9UNT1 228 aa10.98□□□□□ -0.65
NUP54-202ENST00000502850 NPFFR2Q9Y5X5 522 aa10.98□□□□□ -0.65
NUP54-202ENST00000502850 CACNA1HO95180 2353 aa10.98□□□□□ -0.65
NUP54-202ENST00000502850 TRAV1-2A0A0B4J238 106 aa10.98□□□□□ -0.65
NUP54-202ENST00000502850 C2orf92A0A1B0GVN3 265 aa10.98□□□□□ -0.65
NUP54-202ENST00000502850 ZC3H12DA2A288 527 aaKnown RBP10.98□□□□□ -0.65
NUP54-202ENST00000502850 FAM25AB3EWG3 89 aa10.98□□□□□ -0.65
NUP54-202ENST00000502850 FAM25CB3EWG5 89 aa10.98□□□□□ -0.65
NUP54-202ENST00000502850 FAM25GB3EWG6 89 aa10.98□□□□□ -0.65
NUP54-202ENST00000502850 J3QLW9 94 aa10.98□□□□□ -0.65
NUP54-202ENST00000502850 HRKO00198 91 aa10.98□□□□□ -0.65
NUP54-202ENST00000502850 DUX1O43812 170 aa10.98□□□□□ -0.65
NUP54-202ENST00000502850 GPRIN2O60269 458 aa10.98□□□□□ -0.65
NUP54-202ENST00000502850 TRIM3O75382 744 aaPredicted RBP10.98□□□□□ -0.65
NUP54-202ENST00000502850 OR2B3O76000 313 aa10.98□□□□□ -0.65
NUP54-202ENST00000502850 ZNF19P17023 458 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms