RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 CHRNA9Q9UGM1 479 aa7.66□□□□□ -1.18
USP54-215ENST00000497106 PNMA8CA0A1B0GUJ8 204 aa7.66□□□□□ -1.18
USP54-215ENST00000497106 TSPAN2O60636 221 aa7.66□□□□□ -1.18
USP54-215ENST00000497106 FBXO45P0C2W1 286 aa7.66□□□□□ -1.18
USP54-215ENST00000497106 PEPDP12955 493 aa7.66□□□□□ -1.18
USP54-215ENST00000497106 JUNBP17275 347 aaPredicted RBP7.66□□□□□ -1.18
USP54-215ENST00000497106 MYL9P24844 172 aa7.66□□□□□ -1.18
USP54-215ENST00000497106 DPP4P27487 766 aa7.66□□□□□ -1.18
USP54-215ENST00000497106 NUDT6P53370 316 aa7.66□□□□□ -1.18
USP54-215ENST00000497106 LIMK1P53667 647 aa7.66□□□□□ -1.18
USP54-215ENST00000497106 TUBA1BP68363 451 aa7.66□□□□□ -1.18
USP54-215ENST00000497106 ARG2P78540 354 aa7.66□□□□□ -1.18
USP54-215ENST00000497106 TLE3Q04726 772 aa7.66□□□□□ -1.18
USP54-215ENST00000497106 SGCBQ16585 318 aa7.66□□□□□ -1.18
USP54-215ENST00000497106 C1orf140Q5VVS0 124 aa7.66□□□□□ -1.18
USP54-215ENST00000497106 KLHL24Q6TFL4 600 aa7.66□□□□□ -1.18
USP54-215ENST00000497106 TUBA1AQ71U36 451 aa7.66□□□□□ -1.18
USP54-215ENST00000497106 PLCZ1Q86YW0 608 aa7.66□□□□□ -1.18
USP54-215ENST00000497106 ACBD7Q8N6N7 88 aa7.66□□□□□ -1.18
USP54-215ENST00000497106 SFXN2Q96NB2 322 aa7.66□□□□□ -1.18
USP54-215ENST00000497106 LHPPQ9H008 270 aa7.66□□□□□ -1.18
USP54-215ENST00000497106 ERVK-18Q9QC07 812 aa7.66□□□□□ -1.18
USP54-215ENST00000497106 PSORS1C1Q9UIG5 152 aa7.66□□□□□ -1.18
USP54-215ENST00000497106 LOC102723996A0A087X1L8 192 aa7.66□□□□□ -1.18
USP54-215ENST00000497106 NPIPA2E9PIF3 369 aa7.66□□□□□ -1.18
USP54-215ENST00000497106 NPIPA3F8WFD2 350 aa7.66□□□□□ -1.18
USP54-215ENST00000497106 XPNPEP2O43895 674 aa7.66□□□□□ -1.18
USP54-215ENST00000497106 RECKO95980 971 aa7.66□□□□□ -1.18
USP54-215ENST00000497106 ADH6P28332 368 aa7.66□□□□□ -1.18
USP54-215ENST00000497106 CDH15P55291 814 aa7.66□□□□□ -1.18
USP54-215ENST00000497106 C12orf73Q69YU5 71 aa7.66□□□□□ -1.18
USP54-215ENST00000497106 TMEM225Q6GV28 225 aa7.66□□□□□ -1.18
USP54-215ENST00000497106 MEPCEQ7L2J0 689 aaKnown RBP7.66□□□□□ -1.18
USP54-215ENST00000497106 HIST2H2ABQ8IUE6 130 aaPredicted RBP7.66□□□□□ -1.18
USP54-215ENST00000497106 ALDH16A1Q8IZ83 802 aa7.66□□□□□ -1.18
USP54-215ENST00000497106 OR13C2Q8NGS9 318 aa7.66□□□□□ -1.18
USP54-215ENST00000497106 OR6K6Q8NGW6 343 aa7.66□□□□□ -1.18
USP54-215ENST00000497106 POTEKPQ9BYX7 375 aa7.66□□□□□ -1.18
USP54-215ENST00000497106 ALKBH4Q9NXW9 302 aa7.66□□□□□ -1.18
USP54-215ENST00000497106 SRCAPQ6ZRS2 3230 aa7.65□□□□□ -1.18
USP54-215ENST00000497106 A0A1B0GVG6 124 aa7.65□□□□□ -1.18
USP54-215ENST00000497106 OR2W5A6NFC9 320 aa7.65□□□□□ -1.18
USP54-215ENST00000497106 AIREO43918 545 aa7.65□□□□□ -1.18
USP54-215ENST00000497106 KRT8P05787 483 aa7.65□□□□□ -1.18
USP54-215ENST00000497106 CD14P08571 375 aa7.65□□□□□ -1.18
USP54-215ENST00000497106 CEACAM1P13688 526 aa7.65□□□□□ -1.18
USP54-215ENST00000497106 INPP1P49441 399 aa7.65□□□□□ -1.18
USP54-215ENST00000497106 MAPK14Q16539 360 aa7.65□□□□□ -1.18
USP54-215ENST00000497106 KIRREL2Q6UWL6 708 aa7.65□□□□□ -1.18
USP54-215ENST00000497106 SHFQ7M4L6 423 aa7.65□□□□□ -1.18
USP54-215ENST00000497106 S100ZQ8WXG8 99 aa7.65□□□□□ -1.18
USP54-215ENST00000497106 COQ7Q99807 217 aa7.65□□□□□ -1.18
USP54-215ENST00000497106 QPCTLQ9NXS2 382 aa7.65□□□□□ -1.18
USP54-215ENST00000497106 STMN3Q9NZ72 180 aa7.65□□□□□ -1.18
USP54-215ENST00000497106 APEHP13798 732 aaKnown RBP7.65□□□□□ -1.18
USP54-215ENST00000497106 MAP3K8P41279 467 aa7.65□□□□□ -1.18
USP54-215ENST00000497106 LIMS1P48059 325 aa7.65□□□□□ -1.18
USP54-215ENST00000497106 DSCR4P56555 118 aaPredicted RBP7.65□□□□□ -1.18
USP54-215ENST00000497106 CLRN1P58418 232 aa7.65□□□□□ -1.18
USP54-215ENST00000497106 ZNF117Q03924 483 aa7.65□□□□□ -1.18
USP54-215ENST00000497106 APOFQ13790 326 aa7.65□□□□□ -1.18
USP54-215ENST00000497106 SEC23BQ15437 767 aa7.65□□□□□ -1.18
USP54-215ENST00000497106 AGAP7PQ5VUJ5 663 aa7.65□□□□□ -1.18
USP54-215ENST00000497106 GTF2IRD2BQ6EKJ0 949 aa7.65□□□□□ -1.18
USP54-215ENST00000497106 GDPGP1Q6ZNW5 385 aa7.65□□□□□ -1.18
USP54-215ENST00000497106 ZNF554Q86TJ5 538 aa7.65□□□□□ -1.18
USP54-215ENST00000497106 GTF2IRD2Q86UP8 949 aa7.65□□□□□ -1.18
USP54-215ENST00000497106 IQCF1Q8N6M8 205 aa7.65□□□□□ -1.18
USP54-215ENST00000497106 OR52E2Q8NGJ4 325 aa7.65□□□□□ -1.18
USP54-215ENST00000497106 OR2AJ1Q8NGZ0 328 aa7.65□□□□□ -1.18
USP54-215ENST00000497106 C3orf49Q96BT1 292 aa7.65□□□□□ -1.18
USP54-215ENST00000497106 AGAP4Q96P64 663 aa7.65□□□□□ -1.18
USP54-215ENST00000497106 SYNPO2LQ9H987 977 aa7.65□□□□□ -1.18
USP54-215ENST00000497106 CPNE5Q9HCH3 593 aa7.65□□□□□ -1.18
USP54-215ENST00000497106 IL20Q9NYY1 176 aa7.65□□□□□ -1.18
USP54-215ENST00000497106 ICAM5Q9UMF0 924 aa7.65□□□□□ -1.18
USP54-215ENST00000497106 PPIEQ9UNP9 301 aaKnown RBP7.65□□□□□ -1.18
USP54-215ENST00000497106 HDGFL3Q9Y3E1 203 aa7.65□□□□□ -1.18
USP54-215ENST00000497106 PRAMEF27A3QJZ7 478 aa7.65□□□□□ -1.19
USP54-215ENST00000497106 CCRL2O00421 344 aa7.65□□□□□ -1.19
USP54-215ENST00000497106 ZNF208O43345 1280 aa7.65□□□□□ -1.19
USP54-215ENST00000497106 CBR3O75828 277 aa7.65□□□□□ -1.19
USP54-215ENST00000497106 VAMP5O95183 116 aa7.65□□□□□ -1.19
USP54-215ENST00000497106 HTR1FP30939 366 aa7.65□□□□□ -1.19
USP54-215ENST00000497106 OMPP47874 163 aa7.65□□□□□ -1.19
USP54-215ENST00000497106 SKP2Q13309 424 aa7.65□□□□□ -1.19
USP54-215ENST00000497106 NTRK2Q16620 822 aa7.65□□□□□ -1.19
USP54-215ENST00000497106 EXOSC6Q5RKV6 272 aaKnown RBP7.65□□□□□ -1.19
USP54-215ENST00000497106 FAM199XQ6PEV8 388 aaPredicted RBP7.65□□□□□ -1.19
USP54-215ENST00000497106 KCTD18Q6PI47 426 aaPredicted RBP7.65□□□□□ -1.19
USP54-215ENST00000497106 GLRX5Q86SX6 157 aa7.65□□□□□ -1.19
USP54-215ENST00000497106 OR4C3Q8NH37 302 aa7.65□□□□□ -1.19
USP54-215ENST00000497106 SMPDL3BQ92485 455 aa7.65□□□□□ -1.19
USP54-215ENST00000497106 COMMD4Q9H0A8 199 aa7.65□□□□□ -1.19
USP54-215ENST00000497106 UBQLN3Q9H347 655 aa7.65□□□□□ -1.19
USP54-215ENST00000497106 EGLN3Q9H6Z9 239 aa7.65□□□□□ -1.19
USP54-215ENST00000497106 FANCFQ9NPI8 374 aa7.65□□□□□ -1.19
USP54-215ENST00000497106 VDAC3Q9Y277 283 aa7.65□□□□□ -1.19
USP54-215ENST00000497106 IER3IP1Q9Y5U9 82 aa7.65□□□□□ -1.19
USP54-215ENST00000497106 ABCA7Q8IZY2 2146 aa7.65□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms